HHsearch alignment for GI: 254780479 and conserved domain: cd04672
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=97.72 E-value=8.8e-05 Score=54.18 Aligned_cols=102 Identities=11% Similarity=0.108 Sum_probs=59.2
Q ss_pred EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCE------ECCCEEEEEEE-----EEEEE
Q ss_conf 00034137605776457201320474421111346721588863010100002------13735899831-----59999
Q gi|254780479|r 242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWI------LCNTITHTFTH-----FTLTL 310 (356)
Q Consensus 242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~------~l~~ikH~fTH-----~~L~i 310 (356)
T Consensus 6 ~~vv~-~dg~vLL~rr~~~----g~W~lPGG~ve~gEt~~eaa~REv~EETGl~v~~~~l~~v~~~~~~~~~~~~~~~~~ 80 (123)
T cd04672 6 RAAIF-KDGKILLVREKSD----GLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPPQPYQVYK 80 (123)
T ss_pred EEEEE-ECCEEEEEEECCC----CEEECCCEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCCCCEEEEE
T ss_conf 99999-8999999998899----939898466379989999999999997790999858999983543279995249999
Q ss_pred EEEEEECCC-----CCCCCCCEEECHHHHHHCCCCHHHHHHHH
Q ss_conf 999998077-----67667813322788874799878999998
Q gi|254780479|r 311 FVWKTIVPQ-----IVIIPDSTWHDAQNLANAALPTVMKKALS 348 (356)
Q Consensus 311 ~v~~~~~~~-----~~~~~~~~Wv~~~el~~~~LPs~~kKIL~ 348 (356)
T Consensus 81 ~~f~~~~~~g~~~~~~E~~e~~Wf~~deLP~L~~~~~t~~~i~ 123 (123)
T cd04672 81 LFFLCEILGGEFKPNIETSEVGFFALDDLPPLSEKRNTEEQIE 123 (123)
T ss_pred EEEEEEECCCCCCCCCHHHEEEEECHHHCCCCCCCCCCHHHHC
T ss_conf 9999998789388894564367988889987875698979919