HHsearch alignment for GI: 254780479 and conserved domain: cd04673
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.06 E-value=1.8e-05 Score=58.98 Aligned_cols=102 Identities=17% Similarity=0.129 Sum_probs=61.6
Q ss_pred EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCC------EECCCEEEEE------EEEEEE
Q ss_conf 0003413760577645720132047442111134672158886301010000------2137358998------315999
Q gi|254780479|r 242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANW------ILCNTITHTF------THFTLT 309 (356)
Q Consensus 242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~------~~l~~ikH~f------TH~~L~ 309 (356)
T Consensus 3 v~~ii~~~~kvLL~~R~~~-~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (122)
T cd04673 3 VGAVVFRGGRVLLVRRANP-PDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVEFHYV 81 (122)
T ss_pred EEEEEEECCEEEEEEECCC-CCCCEEECCEEEEECCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECCCCCCCEEEEEE
T ss_conf 9999998999999996999-999979998968578999999999999998897647606999991020289996589999
Q ss_pred EEEEEEECCC-----CCCCCCCEEECHHHHHHCCCCHHHH
Q ss_conf 9999998077-----6766781332278887479987899
Q gi|254780479|r 310 LFVWKTIVPQ-----IVIIPDSTWHDAQNLANAALPTVMK 344 (356)
Q Consensus 310 i~v~~~~~~~-----~~~~~~~~Wv~~~el~~~~LPs~~k 344 (356)
T Consensus 82 ~~~f~~~~~~g~~~~~~E~~e~~W~~~del~~l~l~~~~R 121 (122)
T cd04673 82 LIDFLCRYLGGEPVAGDDALDARWVPLDELAALSLTESTR 121 (122)
T ss_pred EEEEEEEECCCEEECCCCEEEEEEEEHHHCCCCCCCCCCC
T ss_conf 9999999739988419883888998699914798993436