HHsearch alignment for GI: 254780479 and conserved domain: cd04679
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=97.91 E-value=8e-05 Score=54.46 Aligned_cols=106 Identities=15% Similarity=0.116 Sum_probs=64.0
Q ss_pred EEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCC------EECCCEEEEEEE--EEEEEE
Q ss_conf 320003413760577645720132047442111134672158886301010000------213735899831--599999
Q gi|254780479|r 240 GAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANW------ILCNTITHTFTH--FTLTLF 311 (356)
Q Consensus 240 ~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~------~~l~~ikH~fTH--~~L~i~ 311 (356)
T Consensus 4 ~v~avv~~~~g~vLL~~R~~~-~~~g~W~lPGG~vE~gEt~~~aa~REv~EEtGl~v~~~~l~~~~~~~~~~~~~~~~~~ 82 (125)
T cd04679 4 GCGAAILRDDGKLLLVKRLRA-PEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPPQHWVAP 82 (125)
T ss_pred EEEEEEEECCCEEEEEEECCC-CCCCEEECCEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCCEEEEE
T ss_conf 699999977998999993899-9999793988305899899999999999987978585379999856435899659999
Q ss_pred EEEEECC-------CCCCCCCCEEECHHHHHHCCCCHHHHHHH
Q ss_conf 9999807-------76766781332278887479987899999
Q gi|254780479|r 312 VWKTIVP-------QIVIIPDSTWHDAQNLANAALPTVMKKAL 347 (356)
Q Consensus 312 v~~~~~~-------~~~~~~~~~Wv~~~el~~~~LPs~~kKIL 347 (356)
T Consensus 83 ~f~~~~~~g~~~~~~~~e~~e~~Wf~~d~LP~-~l~~~~r~~i 124 (125)
T cd04679 83 VYLAENFSGEPRLMEPDKLLELGWFALDALPQ-PLTRATRDAV 124 (125)
T ss_pred EEEEEECCCEEECCCCCEEEEEEEECHHHCCC-CCCHHHHHHH
T ss_conf 99999738878228998146887898889888-6598899974