HHsearch alignment for GI: 254780479 and conserved domain: cd04682
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.01 E-value=2.7e-05 Score=57.83 Aligned_cols=97 Identities=11% Similarity=0.017 Sum_probs=58.5
Q ss_pred EEEEECCCEEEEEECCCC-HH-HHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECC----CEEEEEEE--EEEEEEEEE
Q ss_conf 003413760577645720-13-20474421111346721588863010100002137----35899831--599999999
Q gi|254780479|r 243 FIAITNDNRILLRKRTNT-RL-LEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCN----TITHTFTH--FTLTLFVWK 314 (356)
Q Consensus 243 ~vii~~~~kiLL~KRp~~-gl-l~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~----~ikH~fTH--~~L~i~v~~ 314 (356)
T Consensus 5 ~al~~~~g~vLl~~R~~~~~~~~pg~W~~pGG~~e~~E~~~~~~~RE~~EE~gl~~~~~~~~~~~~~~~~~~~~~~~~F~ 84 (122)
T cd04682 5 LALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPSASPPGTEHVFV 84 (122)
T ss_pred EEEEECCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHEEEEEEECCCCCCCEEEEEE
T ss_conf 99996799799998999999998993879966667998999999999999888856700020278521578994799999
Q ss_pred EECC-------CCCCCCCCEEECHHHHHHCCC
Q ss_conf 9807-------767667813322788874799
Q gi|254780479|r 315 TIVP-------QIVIIPDSTWHDAQNLANAAL 339 (356)
Q Consensus 315 ~~~~-------~~~~~~~~~Wv~~~el~~~~L 339 (356)
T Consensus 85 ~~l~~~~~~~~~~~Egq~~~W~~~eEll~~~~ 116 (122)
T cd04682 85 VPLTAREDAILFGDEGQALRLMTVEEFLAHED 116 (122)
T ss_pred EEEECCCCCCCCCCCCCEEEEEEHHHHHHCCC
T ss_conf 84005631535687330768745999964836