HHsearch alignment for GI: 254780479 and conserved domain: cd04683
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.10 E-value=1.9e-05 Score=58.93 Aligned_cols=100 Identities=16% Similarity=0.233 Sum_probs=61.6
Q ss_pred EEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECC--C--EE---EEEEE--EEEEEE
Q ss_conf 200034137605776457201320474421111346721588863010100002137--3--58---99831--599999
Q gi|254780479|r 241 AVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCN--T--IT---HTFTH--FTLTLF 311 (356)
Q Consensus 241 ~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~--~--ik---H~fTH--~~L~i~ 311 (356)
T Consensus 2 av~vvl~~~~~vLL~~R~~~~~~~G~W~~PGG~ve~GEt~~~aa~REl~EEtGl~v~~~~l~~~~~~~~~~~~~~~~~~~ 81 (120)
T cd04683 2 AVYVLLRRDDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRIGL 81 (120)
T ss_pred EEEEEEEECCEEEEEECCCCCCCCCEEECCEEECCCCCCHHHHHHHHHHHHHCCEEEECEEEEEEEEECCCCCCCEEEEE
T ss_conf 89999993999999977899999997989758877999999999999888769388734089999883268998799999
Q ss_pred EEEEECC-------CCCCCCCCEEECHHHHHHCCCC
Q ss_conf 9999807-------7676678133227888747998
Q gi|254780479|r 312 VWKTIVP-------QIVIIPDSTWHDAQNLANAALP 340 (356)
Q Consensus 312 v~~~~~~-------~~~~~~~~~Wv~~~el~~~~LP 340 (356)
T Consensus 82 ~f~~~~~~g~p~~~~p~e~~~~~Wf~~deLP~~~~~ 117 (120)
T cd04683 82 FFTVRRWSGEPRNCEPDKCAELRWFPLDALPDDTVD 117 (120)
T ss_pred EEEEEEECCEEECCCCCCEEEEEEECHHHCCCCCCC
T ss_conf 999997478986189981458999998899886577