HHsearch alignment for GI: 254780479 and conserved domain: cd04685
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=95.12 E-value=0.13 Score=31.86 Aligned_cols=96 Identities=15% Similarity=0.110 Sum_probs=54.5
Q ss_pred EEEEECCCEEEEEECCCC-HHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEEC---C----CEEEEEE----EEEEEE
Q ss_conf 003413760577645720-132047442111134672158886301010000213---7----3589983----159999
Q gi|254780479|r 243 FIAITNDNRILLRKRTNT-RLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILC---N----TITHTFT----HFTLTL 310 (356)
Q Consensus 243 ~vii~~~~kiLL~KRp~~-gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l---~----~ikH~fT----H~~L~i 310 (356)
T Consensus 5 vvl~d~~grvLL~r~~~~~~~~~~~W~~pgG~~~~gE~~~~a~~RE~~EE~G~~~~~~~~~v~~r~~~f~~~g~~~~~~E 84 (133)
T cd04685 5 VVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGVDGRQEE 84 (133)
T ss_pred EEEECCCCCEEEEEECCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEECCCCCCEEEEEEEEECCCCCCCCEE
T ss_conf 99986999999997447899999918599874889869899999999987597800244637999678703787100068
Q ss_pred EEEEEECCC------------CCCCCCCEEECHHHHHHCC
Q ss_conf 999998077------------6766781332278887479
Q gi|254780479|r 311 FVWKTIVPQ------------IVIIPDSTWHDAQNLANAA 338 (356)
Q Consensus 311 ~v~~~~~~~------------~~~~~~~~Wv~~~el~~~~ 338 (356)
T Consensus 85 ~fflvr~~~~e~~~~~~t~~E~~~i~e~RWws~~EL~~t~ 124 (133)
T cd04685 85 RFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAATP 124 (133)
T ss_pred EEEEEEECCCEECCCCCCHHHHHHCCCCCCCCHHHHHHCC
T ss_conf 9999994686035766766664010255258899993279