HHsearch alignment for GI: 254780479 and conserved domain: cd04694
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=97.17 E-value=0.0012 Score=46.17 Aligned_cols=44 Identities=18% Similarity=0.311 Sum_probs=35.2
Q ss_pred EEEEEEEECCCEEEEEECCCC-HHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 320003413760577645720-13204744211113467215888
Q gi|254780479|r 240 GAVFIAITNDNRILLRKRTNT-RLLEGMDELPGSAWSSTKDGNID 283 (356)
Q Consensus 240 ~~~~vii~~~~kiLL~KRp~~-gll~GLwEFP~~e~~~~~~~~~~ 283 (356)
T Consensus 3 gVa~ii~d~dgrvLL~rRs~~~~~~Pg~W~~PGG~ve~GEt~~ea 47 (143)
T cd04694 3 GVAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEA 47 (143)
T ss_pred EEEEEEECCCCEEEEEEECCCCCCCCCCEECCCCCCCCCCCHHHH
T ss_conf 599999989992999985898889998171887745899898999