HHsearch alignment for GI: 254780479 and conserved domain: cd04699
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=98.48 E-value=8.9e-07 Score=68.22 Aligned_cols=102 Identities=15% Similarity=0.147 Sum_probs=65.0
Q ss_pred EEEEEEEECCCEEEEEECCC-CHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCE------ECCCE--EEEEEEEEEEE
Q ss_conf 32000341376057764572-01320474421111346721588863010100002------13735--89983159999
Q gi|254780479|r 240 GAVFIAITNDNRILLRKRTN-TRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWI------LCNTI--THTFTHFTLTL 310 (356)
Q Consensus 240 ~~~~vii~~~~kiLL~KRp~-~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~------~l~~i--kH~fTH~~L~i 310 (356)
T Consensus 3 ~V~~~I~~~~g~vLl~kR~~~~~~~~G~W~~PGG~ie~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~ 82 (129)
T cd04699 3 AVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVYNVIY 82 (129)
T ss_pred EEEEEEEECCCEEEEEEECCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECCCCCEEEEE
T ss_conf 99999998999899998089999999818898050659989999999999998795778768876999972799508999
Q ss_pred EEEEEECCCC-----CCCCCCEEECHHHHHHCCCCH
Q ss_conf 9999980776-----766781332278887479987
Q gi|254780479|r 311 FVWKTIVPQI-----VIIPDSTWHDAQNLANAALPT 341 (356)
Q Consensus 311 ~v~~~~~~~~-----~~~~~~~Wv~~~el~~~~LPs 341 (356)
T Consensus 83 ~~f~~~~~~~~~~~~~E~~e~~Wv~~eeL~~L~~d~ 118 (129)
T cd04699 83 LVFVCEALSGAVKLSDEHEEYAWVTLEELAILKADI 118 (129)
T ss_pred EEEEEEECCCCCCCCCCCEEEEEEEHHHHHHCCCCC
T ss_conf 999986248868788652066998489975487975