HHsearch results for GI: 254780479 and protein with PDBid: 1u20_A

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Probab=94.38  E-value=0.032  Score=34.58  Aligned_cols=90  Identities=11%  Similarity=0.057  Sum_probs=48.6

Q ss_pred             EECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCH-HHH------HHCCCCCCCCEECCCEEEEEEEE-----EEEEEEE
Q ss_conf             41376057764572013204744211113467215-888------63010100002137358998315-----9999999
Q gi|254780479|r  246 ITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDG-NID------THSAPFTANWILCNTITHTFTHF-----TLTLFVW  313 (356)
Q Consensus       246 i~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~-~~~------~~~~~~~~~~~~l~~ikH~fTH~-----~L~i~v~  313 (356)
                      +..+..+|+++|.     .|.|+||++..+.++.. ...      ++......... +....|.+||.     ++-.++|
T Consensus        52 ~~~~~~vl~~~r~-----~g~~~~pgG~~~~~e~~~~~~~~re~~ee~g~~~~~~~-l~~~~y~~s~~~~~~~~~v~hfy  125 (212)
T 1u20_A           52 VPIRRVLLMMMRF-----DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVE-VTEDDYRSSQVREHPQKCVTHFY  125 (212)
T ss_dssp             EECCEEEEEEEET-----TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCC-CCGGGEEEEEEECTTSCEEEEEE
T ss_pred             EECCCEEEEEEEC-----CCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE-EEECCEEEECCCCCCCEEEEEEE
T ss_conf             6257678999945-----99286997213799863999888899998587532157-65412486378789976999999


Q ss_pred             EEECCC----------------CCCCCCCEEECHHHHHH--CCCCH
Q ss_conf             998077----------------67667813322788874--79987
Q gi|254780479|r  314 KTIVPQ----------------IVIIPDSTWHDAQNLAN--AALPT  341 (356)
Q Consensus       314 ~~~~~~----------------~~~~~~~~Wv~~~el~~--~~LPs  341 (356)
                      ...+..                ..+..+..|++..++.+  +++|.
T Consensus       126 ~~~lt~~el~~~E~~~~~a~~~~~Evl~~~wVPl~~L~~~~~~lP~  171 (212)
T 1u20_A          126 IKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDRVGGLPA  171 (212)
T ss_dssp             EEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTSSTBHHH
T ss_pred             EEECCHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHCCCCCHH
T ss_conf             7864788888876134446667633234214579996352367512