HHsearch results for GI: 254780479 and protein with PDBid: 1u20_A
>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*
Probab=94.38 E-value=0.032 Score=34.58 Aligned_cols=90 Identities=11% Similarity=0.057 Sum_probs=48.6
Q ss_pred EECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCH-HHH------HHCCCCCCCCEECCCEEEEEEEE-----EEEEEEE
Q ss_conf 41376057764572013204744211113467215-888------63010100002137358998315-----9999999
Q gi|254780479|r 246 ITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDG-NID------THSAPFTANWILCNTITHTFTHF-----TLTLFVW 313 (356)
Q Consensus 246 i~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~-~~~------~~~~~~~~~~~~l~~ikH~fTH~-----~L~i~v~ 313 (356)
+..+..+|+++|. .|.|+||++..+.++.. ... ++......... +....|.+||. ++-.++|
T Consensus 52 ~~~~~~vl~~~r~-----~g~~~~pgG~~~~~e~~~~~~~~re~~ee~g~~~~~~~-l~~~~y~~s~~~~~~~~~v~hfy 125 (212)
T 1u20_A 52 VPIRRVLLMMMRF-----DGRLGFPGGFVDTRDISLEEGLKRELEEELGPALATVE-VTEDDYRSSQVREHPQKCVTHFY 125 (212)
T ss_dssp EECCEEEEEEEET-----TSCEECSEEEECTTTSCHHHHHHHHHHHHHCGGGGGCC-CCGGGEEEEEEECTTSCEEEEEE
T ss_pred EECCCEEEEEEEC-----CCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEE-EEECCEEEECCCCCCCEEEEEEE
T ss_conf 6257678999945-----99286997213799863999888899998587532157-65412486378789976999999
Q ss_pred EEECCC----------------CCCCCCCEEECHHHHHH--CCCCH
Q ss_conf 998077----------------67667813322788874--79987
Q gi|254780479|r 314 KTIVPQ----------------IVIIPDSTWHDAQNLAN--AALPT 341 (356)
Q Consensus 314 ~~~~~~----------------~~~~~~~~Wv~~~el~~--~~LPs 341 (356)
...+.. ..+..+..|++..++.+ +++|.
T Consensus 126 ~~~lt~~el~~~E~~~~~a~~~~~Evl~~~wVPl~~L~~~~~~lP~ 171 (212)
T 1u20_A 126 IKELKLEEIERIEAEAVNAKDHGLEVMGLIRVPLYTLRDRVGGLPA 171 (212)
T ss_dssp EEECCHHHHHHHHHHHTTSTTBTTTEEEEEECCCSBCTTSSTBHHH
T ss_pred EEECCHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHHHHCCCCCHH
T ss_conf 7864788888876134446667633234214579996352367512