HHsearch results for GI: 254780479 and protein with PDBid: 1vcd_A
>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, hydrolase, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus HB8} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*
Probab=97.91 E-value=9.7e-05 Score=52.36 Aligned_cols=112 Identities=8% Similarity=-0.015 Sum_probs=63.6
Q ss_pred EEEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCC------EECCCEEEEEEE-EEEEEE
Q ss_conf 2320003413760577645720132047442111134672158886301010000------213735899831-599999
Q gi|254780479|r 239 TGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANW------ILCNTITHTFTH-FTLTLF 311 (356)
Q Consensus 239 ~~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~------~~l~~ikH~fTH-~~L~i~ 311 (356)
....+++++.++++||.||.. |.|+||++..+.+++......++...+.. ..+..+.|...+ ....++
T Consensus 3 v~agavv~~~~~~vLl~~~~~-----g~W~~PgG~ve~gEt~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 77 (126)
T 1vcd_A 3 LGAGGVVFNAKREVLLLRDRM-----GFWVFPKGHPEPGESLEEAAVREVWEETGVRAEVLLPLYPTRYVNPKGVEREVH 77 (126)
T ss_dssp EEEEEEEECTTSCEEEEECTT-----SCEECCEECCCTTCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECTTSCEEEEE
T ss_pred EEEEEEEEECCCEEEEEECCC-----CCEECCEEEECCCCCHHHHHHHHHHHHHCEEEEEEEEEEEEEEECCCCEEEEEE
T ss_conf 999999998998999999079-----949998823559989999999999887380589866777899768997599999
Q ss_pred EEEEECCC----CCCCCCCEEECHHHHHHCCCCHHHHHHHHHCCCCCC
Q ss_conf 99998077----676678133227888747998789999984482379
Q gi|254780479|r 312 VWKTIVPQ----IVIIPDSTWHDAQNLANAALPTVMKKALSAGGIKVP 355 (356)
Q Consensus 312 v~~~~~~~----~~~~~~~~Wv~~~el~~~~LPs~~kKIL~alg~~~p 355 (356)
.|.+.... .....+.+|++.+++.++......+++|+.+-.+.|
T Consensus 78 ~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~~~~~~~~il~~~~~~lp 125 (126)
T 1vcd_A 78 WFLMRGEGAPRLEEGMTGAGWFSPEEARALLAFPEDLGLLEVALERLP 125 (126)
T ss_dssp EEEEEEESCCCCCTTCCEEEEECHHHHHHHBCSHHHHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCCCCCEEEEEEEHHHHHHCCCCHHHHHHHHHHHHHCC
T ss_conf 999997699679845228999889997632299669999999998679