HHsearch results for GI: 254780479 and protein with PDBid: 2kdv_A
>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A
Probab=97.89 E-value=3e-05 Score=55.95 Aligned_cols=113 Identities=5% Similarity=0.002 Sum_probs=60.5
Q ss_pred EEEEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCEECCCEEEEE----------------
Q ss_conf 3200034137605776457201320474421111346721588863010100002137358998----------------
Q gi|254780479|r 240 GAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCNTITHTF---------------- 303 (356)
Q Consensus 240 ~~~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~~~~~~~~~~~~l~~ikH~f---------------- 303 (356)
....+|++.+|++||.||... |.|+||++..+.++........+...+.......+....
T Consensus 10 ~Vg~vi~n~~gkvLl~kR~~~----g~W~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (164)
T 2kdv_A 10 NVGIVICNRQGQVMWARRFGQ----HSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVR 85 (164)
T ss_dssp EEEEEEECTTSEEEEEEETTC----CCEECCEEECCTTCCHHHHHHHHHHHHHCCCGGGEEEEEECSSCEEEECCTTTCC
T ss_pred EEEEEEEECCCEEEEEEECCC----CEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEE
T ss_conf 189999968992999998899----9189991660799898999999999875645444431268804302457642010
Q ss_pred -----EEEEEEEEEEEEECC-----------CCCCCCCCEEECHHHHHHCCCCH---H-------HHHHHHHCCCCCCC
Q ss_conf -----315999999999807-----------76766781332278887479987---8-------99999844823799
Q gi|254780479|r 304 -----THFTLTLFVWKTIVP-----------QIVIIPDSTWHDAQNLANAALPT---V-------MKKALSAGGIKVPQ 356 (356)
Q Consensus 304 -----TH~~L~i~v~~~~~~-----------~~~~~~~~~Wv~~~el~~~~LPs---~-------~kKIL~alg~~~p~ 356 (356)
..+....+.|.+... ......+++|++++++.+..+|- . .+|+|..+-...||
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~fk~~v~~~~l~~f~~~i~~~~~~~p~ 164 (164)
T 2kdv_A 86 WDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVVMSLQENTPK 164 (164)
T ss_dssp TTSSSCCCEEEEEEEEEEESSCGGGCCSCSSSSCSEEEEEEEETTTGGGGSCHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred ECCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCHHEEEEECCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 0035652230799999999358653035779983315748677999877511106999999999999999988753899