HHsearch results for GI: 254780479 and protein with PDBid: 3fsp_A
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=100.00 E-value=0 Score=757.78 Aligned_cols=339 Identities=32% Similarity=0.597 Sum_probs=309.3
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCHHHHHCCCHHHHH
Q ss_conf 16899999999999628998875485544456787046766446731161203326589987748997898729989999
Q gi|254780479|r 4 PEHIIQSKILDWYDTNHRVLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEIL 83 (356)
Q Consensus 4 ~~~~~~~~ll~w~~~~~R~lpwr~~~~~~~~~~~~py~v~vseimlqqT~v~~v~~~~~~~~~~~P~~~~la~a~~~~vl 83 (356)
+++.|++.||+||+.|+|+||||++ +|||+|||||||||||||++|++||++|+++|||+++||+|+++||+
T Consensus 12 ~~~~~~~~ll~wy~~~~r~lpWr~~--------~~py~vlvseil~qqT~~~~v~~~~~~~~~~~pt~~~la~a~~~ev~ 83 (369)
T 3fsp_A 12 PAREFQRDLLDWFARERRDLPWRKD--------RDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFPTLEALADADEDEVL 83 (369)
T ss_dssp CHHHHHHHHHHHHHHHCCCCGGGSC--------CCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHCCSHHHHHTSCHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCC--------CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHCCCHHHHH
T ss_conf 5999999999999846988998989--------98799999999861087889999999999977899999778999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHCCCCC
Q ss_conf 99740463458899987767543005786873145688888777877667766434963131243146665765197545
Q gi|254780479|r 84 SAWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIKP 163 (356)
Q Consensus 84 ~~w~gLGyy~Rar~l~~~a~~i~~~~~g~~P~~~~~l~~LpGiG~yta~ai~s~a~~~~~~~vD~Nv~RVl~R~~~~~~~ 163 (356)
++|+|||||+||+|||++|++|+++|+|.+|.+.++|++|||||+|||+||+|||||+++++|||||.||++|++++..+
T Consensus 84 ~~~~~lGyy~ra~~l~~~a~~i~~~~~g~~P~~~~~L~~LpGVG~~TA~ail~~a~~~~~~~vD~nv~Rv~~R~~~~~~~ 163 (369)
T 3fsp_A 84 KAWEGLGYYSRVRNLHAAVKEVKTRYGGKVPDDPDEFSRLKGVGPYTVGAVLSLAYGVPEPAVDGNVMRVLSRLFLVTDD 163 (369)
T ss_dssp HTTTTSSCTHHHHHHHHHHHHHHHHHTTCCCCSHHHHHTSTTCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHTTCCSC
T ss_pred HHHHHCCHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHHHHCCCCCC
T ss_conf 99874688999999985212276004899998799985242258899999999861488612248513567543044688
Q ss_pred C--CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 7--35689998741025785226789999999986320412356431100000134310110012344322222211232
Q gi|254780479|r 164 A--PLYHKTIKNYARKITSTSRPGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSEGKSHLLGINTIKKKRPMRTGA 241 (356)
Q Consensus 164 ~--~~~~k~l~~~~~~~~~~~~~~~~nQAlMdlGa~iC~p~~P~C~~Cpl~~~C~~~~~~~~~~~P~kk~KKkk~~r~~~ 241 (356)
. +...+.++.+++.++|..++++||||||||||+||+|++|+|..|||++.|.||+.|.++.||+|++|++++.+...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~nqalmdlG~~iC~~~~P~C~~CPl~~~C~~~~~~~~~~~P~k~kK~~~~~~~~~ 243 (369)
T 3fsp_A 164 IAKPSTRKRFEQIVREIMAYENPGAFNEALIELGALVCTPRRPSCLLCPVQAYCQAFAEGVAEELPVKMKKTAVKQVPLA 243 (369)
T ss_dssp TTSHHHHHHHHHHHHHHCCSSSHHHHHHHHHHHHHHTSCSSSCCTTTCTTGGGCHHHHHTCGGGCSCCCCCCCCEEEEEE
T ss_pred CCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCHHHCCCCHHHCCCCCCCCCCCCCCHH
T ss_conf 87511467788753035876775688999999756415689998988985332776527997656788778876532046
Q ss_pred EEEEEECCCEEEEEECCCCHHHHCCCCCCCCCCCCCCCHHHHH-----HCCCCCCCCEECCCEEEEEEEEEEEEEEEEEE
Q ss_conf 0003413760577645720132047442111134672158886-----30101000021373589983159999999998
Q gi|254780479|r 242 VFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDT-----HSAPFTANWILCNTITHTFTHFTLTLFVWKTI 316 (356)
Q Consensus 242 ~~vii~~~~kiLL~KRp~~gll~GLwEFP~~e~~~~~~~~~~~-----~~~~~~~~~~~l~~ikH~fTH~~L~i~v~~~~ 316 (356)
++++++.+|++||+||+++|+|+||||||+++++..+...... ...........+++|+|+||||++++++|.+.
T Consensus 244 ~~i~~~~~~~iLl~kR~~~gll~GLweFP~~~~e~~~~~~~l~r~l~ee~~i~~~~~~~l~~v~H~fSH~~l~l~vy~~~ 323 (369)
T 3fsp_A 244 VAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGADGKEKLEQMVGEQYGLQVELTEPIVSFEHAFSHLVWQLTVFPGR 323 (369)
T ss_dssp EEEEECSSSEEEEEECCSSSTTTTCEECCEEECSSSCTHHHHHHHHTTSSSCCEEECCCCCEEEEECSSEEEEEEEEEEE
T ss_pred HHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHCCCCCEEEEECCCEEEEEEEEEEE
T ss_conf 76641217888998625544457876288566576430778998889870886011140451589658968999999999
Q ss_pred CCCCC-CCCCCEEECHHHHHHCCCCHHHHHHHHHC
Q ss_conf 07767-66781332278887479987899999844
Q gi|254780479|r 317 VPQIV-IIPDSTWHDAQNLANAALPTVMKKALSAG 350 (356)
Q Consensus 317 ~~~~~-~~~~~~Wv~~~el~~~~LPs~~kKIL~al 350 (356)
+.+.. ..++++|++.+++++++||++++|||+.+
T Consensus 324 ~~~~~~~~~~~~Wv~~~el~~~~lp~~~kKIl~~~ 358 (369)
T 3fsp_A 324 LVHGGPVEEPYRLAPEDELKAYAFPVSHQRVWREY 358 (369)
T ss_dssp ECCSSCCCTTEEEEEGGGGGGSCCCHHHHHHHHHH
T ss_pred ECCCCCCCCCCEEEEHHHHHHCCCCHHHHHHHHHH
T ss_conf 67898788787884389876689998999999999