RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780479|ref|YP_003064892.1| A/G-specific adenine
glycosylase [Candidatus Liberibacter asiaticus str. psy62]
(356 letters)
>gnl|CDD|31387 COG1194, MutY, A/G-specific DNA glycosylase [DNA replication,
recombination, and repair].
Length = 342
Score = 334 bits (857), Expect = 2e-92
Identities = 139/350 (39%), Positives = 193/350 (55%), Gaps = 19/350 (5%)
Query: 3 QPEHIIQSKILDWYDTNHRVLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFK 62
Q +LDWYD N R LPWR + PY+VW+SEIMLQQT V TV PY++
Sbjct: 6 GDIEKFQEALLDWYDKNGRDLPWRETK--------DPYRVWVSEIMLQQTQVATVIPYYE 57
Query: 63 KFMQKWPTIFCLSSAKDEEILSAWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKK 122
+F++++PTI L++A ++E+L AW GLGYY+RARNL K A +V+++ G FP E L
Sbjct: 58 RFLERFPTIKALAAAPEDEVLKAWEGLGYYSRARNLHKAAQEVVERHGGEFPDDEEELAA 117
Query: 123 LPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIKPAPLYH--KTIKNYARK-IT 179
LPG+G YTA AI++ AFN V+D N++R++SR F I K + A + +T
Sbjct: 118 LPGVGPYTAGAILSFAFNQPEPVLDGNVKRVLSRLFAISGDIGKPKTKKELWELAEQLLT 177
Query: 180 STSRPGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSEGKSHLLGINTIKKKRPMRT 239
RPGDF QAMMDLGA ICT+ KP C LCP++ NC + G + KKK P R
Sbjct: 178 PDRRPGDFNQAMMDLGATICTAKKPKCSLCPLRDNCAAYRNGTPEKYPVKKPKKKLPRR- 236
Query: 240 GAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCNTI 299
A F+ + D +LL KR LL G+ P + D + A +
Sbjct: 237 FAAFLILNRDGEVLLEKRPEKGLLGGLWCFPQFEDEA--DLLDWLAADGLAAEPL--GAF 292
Query: 300 THTFTHFTLTLFVWKTIVPQIVIIPDSTWHDAQNLANAALPTVMKKALSA 349
HTFTHF LT+ + + ++ D W++ +L + LP +KK L
Sbjct: 293 RHTFTHFRLTIELRASASL---VLSDGRWYNLSDLESIGLPAPVKKLLQQ 339
>gnl|CDD|37668 KOG2457, KOG2457, KOG2457, A/G-specific adenine DNA glycosylase
[Replication, recombination and repair].
Length = 555
Score = 216 bits (551), Expect = 7e-57
Identities = 126/408 (30%), Positives = 180/408 (44%), Gaps = 70/408 (17%)
Query: 8 IQSKILDWYDTNHRVLPWRTSP-KTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQ 66
+ +LDWYD N R LPWR + EK Y+VW+SEIMLQQT V+TV Y+ ++MQ
Sbjct: 93 FRMSLLDWYDVNKRDLPWRNRRSEDEKDWERRAYEVWVSEIMLQQTRVQTVMKYYTRWMQ 152
Query: 67 KWPTIFCLSSAK-DEEILSAWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEILKK-LP 124
KWPT++ L+ A ++E+ WAGLGYY RAR L + A ++V EG FP L K +P
Sbjct: 153 KWPTLYDLAQASLEKEVNELWAGLGYYRRARRLLEGAKMVVAGTEGEFPRTASSLMKGVP 212
Query: 125 GIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIK--PAPLYHKTIKNYARKITSTS 182
G+G YTA AI +IAFN +VD N+ R++SR I + ++ A ++ S
Sbjct: 213 GVGQYTAGAIASIAFNQVTGIVDGNVIRVLSRALAIHSDCSKGKFFQSSWKLAAQLVDPS 272
Query: 183 RPGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSEGKSHL----------------- 225
RPGDF QA+M+LGA +CT KP C CP+ C F + +
Sbjct: 273 RPGDFNQALMELGATLCTPQKPSCSSCPVSSQCRAFQLSEQNRTISVGDTYPTDVEKAKP 332
Query: 226 ------LGINTIKKKRPMRTGAVFIAI------------------------TNDNRILLR 255
+ + I ++G VF+ T N IL+
Sbjct: 333 RHDFCCVCVLEIPSLERNQSGGVFVLPKRPEQLAGREEFPSVILNEEADPATRRNAILVY 392
Query: 256 KRTNTRLLEGMDELPGSAWSSTKDG-NIDTHSAPFTANWILCNTIT------------HT 302
R LL G+ + P + +I H W+L +T HT
Sbjct: 393 LRPAFGLLAGLWKFPTIVSRELSEFVHIFAHIQRKVYVWLLVVQLTGGTEDLFKGQAKHT 452
Query: 303 FTHFTLTLFVWKTIV----PQIVIIPDSTWHDAQNLAN-AALPTVMKK 345
F+H +T V T V W +L + ++K
Sbjct: 453 FSHICVTSDVLSTAGLTSAVVTVPPFRLQWIKQLSLDHMVEKEQILKC 500
>gnl|CDD|28938 cd00056, ENDO3c, endonuclease III; includes endonuclease III
(DNA-(apurinic or apyrimidinic site) lyase), alkylbase
DNA glycosidases (Alka-family) and other DNA
glycosidases.
Length = 158
Score = 148 bits (374), Expect = 3e-36
Identities = 51/160 (31%), Positives = 86/160 (53%), Gaps = 6/160 (3%)
Query: 40 YKVWISEIMLQQTTVKTVEPYFKKFMQKW-PTIFCLSSAKDEEILSAWAGLGYYTRARNL 98
++V +SEI+ QQTT K V +++ +++ PT L++A +EE+ LGY +A+ L
Sbjct: 1 FEVLVSEILSQQTTDKAVNKAYERLFERYGPTPEALAAADEEELRELIRSLGYRRKAKYL 60
Query: 99 KKCADIIVKKYEG---NFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIIS 155
K+ A IV+ + G + P E L LPG+G TA+ ++ A A VDT++ R++
Sbjct: 61 KELARAIVEGFGGLVLDDPDAREELLALPGVGRKTANVVLLFALGPDAFPVDTHVRRVLK 120
Query: 156 RYFDIIKPAPLYHKTIKNYARKITSTSRPGDFVQAMMDLG 195
R I K + ++ ++ G+ QA+MDLG
Sbjct: 121 RLGLIPKKKT--PEELEELLEELLPKPYWGEANQALMDLG 158
>gnl|CDD|30526 COG0177, Nth, Predicted EndoIII-related endonuclease [DNA
replication, recombination, and repair].
Length = 211
Score = 116 bits (291), Expect = 1e-26
Identities = 50/179 (27%), Positives = 89/179 (49%), Gaps = 4/179 (2%)
Query: 38 SPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAKDEEILSAWAGLGYYTR-AR 96
P+++ ++ I+ QTT + V +++PT L +A +EE+ +G Y A+
Sbjct: 28 DPFELLVAVILSAQTTDEVVNKATPALFKRYPTPEDLLNADEEELEELIKSIGLYRNKAK 87
Query: 97 NLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISR 156
N+K+ A I+++K+ G P E L LPG+G TA+ +++ AF A+ VDT++ R+ +R
Sbjct: 88 NIKELARILLEKFGGEVPDTREELLSLPGVGRKTANVVLSFAFGIPAIAVDTHVHRVSNR 147
Query: 157 YFDIIKPAPLYHKTIKNYARKITSTSRPGDFVQAMMDLGALICTSNKPLCPLCPIQKNC 215
+ P + + + I D ++ G IC + KP C CP+ C
Sbjct: 148 LG--LVPGKTPEEVEEALMKLIPKELWT-DLHHWLILHGRYICKARKPRCEECPLADLC 203
>gnl|CDD|144361 pfam00730, HhH-GPD, HhH-GPD superfamily base excision DNA repair
protein. This family contains a diverse range of
structurally related DNA repair proteins. The
superfamily is called the HhH-GPD family after its
hallmark Helix-hairpin-helix and Gly/Pro rich loop
followed by a conserved aspartate. This includes
endonuclease III, EC:4.2.99.18 and MutY an A/G-specific
adenine glycosylase, both have a C terminal 4Fe-4S
cluster. The family also includes 8-oxoguanine DNA
glycosylases. The methyl-CPG binding protein MBD4 also
contains a related domain that is a thymine DNA
glycosylase. The family also includes
DNA-3-methyladenine glycosylase II EC:3.2.2.21 and other
members of the AlkA family.
Length = 144
Score = 108 bits (272), Expect = 2e-24
Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 9/143 (6%)
Query: 44 ISEIMLQQTTVKTVEPYFKKFMQKW--PTIFCLSSAKDEEILSAWAGLGYY-TRARNLKK 100
+S I+ QQT+ K K+ +++ PT L+ A +EE+ GLG+Y +A+ +K+
Sbjct: 1 VSAILSQQTSDKAANKITKRLFERYGFPTPEDLAEADEEELRELIKGLGFYRRKAKYIKE 60
Query: 101 CADIIVKKYEGNFPHKV---EILKKLPGIGDYTASAIVAIAFNHF--AVVVDTNIERIIS 155
A I+V+ Y G P + E L LPG+G +TA A++ A VDT++ R+
Sbjct: 61 LARILVEGYLGLVPLDLEELEALLALPGVGRWTAEAVLLFALGRPDVFPAVDTHVRRVAK 120
Query: 156 RYFDIIKPAPLYHKTIKNYARKI 178
R +IK P + +
Sbjct: 121 RLG-LIKEKPTPEEVERELEELW 142
>gnl|CDD|72889 cd03431, DNA_Glycosylase_C, DNA glycosylase (MutY in bacteria and
hMYH in humans) is responsible for repairing misread
A*oxoG residues to C*G by removing the inappropriately
paired adenine base from the DNA backbone. It belongs to
the Nudix hydrolase superfamily and is important for the
repair of various genotoxic lesions. Enzymes belonging
to this superfamily requires a divalent cation, such as
Mg2+ or Mn2+ for their activity. They are also
recognized by a highly conserved 23-residue nudix motif
(GX5EX7REUXEEXGU, where U = I, L or V). However, DNA
glycosylase does not seem to contain this signature
motif. DNA glycosylase consists of 2 domains: the
N-terminal domain contains the catalytic properties of
the enzyme and the C-terminal domain affects substrate
(oxoG) binding and enzymatic turnover. The C-terminal
domain is highly similar to MutT, based on secondary
structure and topology, despite low sequence identity.
MutT sanitizes the nucleotide precursor pool by
hydrolyzing oxo-dGTP to oxo-dGMO and inorganic
pyrophosphate. The similarity strongly suggests that the
two proteins share a common evolutionary origin..
Length = 118
Score = 88.5 bits (219), Expect = 3e-18
Identities = 42/116 (36%), Positives = 54/116 (46%), Gaps = 4/116 (3%)
Query: 238 RTGAVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWIL-- 295
R G + I ND R+LL KR LL G+ E P W DG SA A +
Sbjct: 2 RRGIAVVVIRNDGRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRLSLE 61
Query: 296 -CNTITHTFTHFTLTLFVWKTIVPQ-IVIIPDSTWHDAQNLANAALPTVMKKALSA 349
T+ HTFTHF LTL V+ + ++ + W + L ALPTVM+K L
Sbjct: 62 PLGTVKHTFTHFRLTLHVYLARLEGDLLAPDEGRWVPLEELDEYALPTVMRKILEL 117
>gnl|CDD|37132 KOG1921, KOG1921, KOG1921, Endonuclease III [Replication,
recombination and repair].
Length = 286
Score = 54.2 bits (130), Expect = 5e-08
Identities = 41/131 (31%), Positives = 62/131 (47%), Gaps = 11/131 (8%)
Query: 89 LGYYTR-ARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNHFA-VVV 146
+G+YTR A+ LKK A I+ K++G+ P VE L LPG+G A + +A+N + V
Sbjct: 129 VGFYTRKAKYLKKTAKILQDKFDGDIPDTVEDLLSLPGVGPKMAHLTMQVAWNKIVGICV 188
Query: 147 DTNIERIISRYFDIIKPAPLYHKTIKNYARKITSTSRPGDFVQAMMDL----GALICTSN 202
DT++ RI +R + +T R P + L G ICT
Sbjct: 189 DTHVHRICNRLGWVDTKTKSPEQT-----RVALQQWLPKSLWVEINHLLVGFGQTICTPR 243
Query: 203 KPLCPLCPIQK 213
+P C LC + +
Sbjct: 244 RPRCGLCLLSR 254
>gnl|CDD|32412 COG2231, COG2231, Uncharacterized protein related to Endonuclease
III [DNA replication, recombination, and repair].
Length = 215
Score = 51.8 bits (124), Expect = 3e-07
Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 8/187 (4%)
Query: 40 YKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFC-LSSAKDEEILSAWAGLGYY-TRARN 97
++ I I+ Q T+ K VE + + + +EE+ G+Y +A+
Sbjct: 31 DEIIIGAILTQNTSWKNVEKALENLKNEGILNLKKILKLDEEELAELIRPSGFYNQKAKR 90
Query: 98 LKKCADIIVKKYEGNFPHK----VEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNIERI 153
LK + + K + K E L + GIG TA +I+ A + VVD R+
Sbjct: 91 LKALSKNLAKFFINLESFKSEVLREELLSIKGIGKETADSILLYALDRPVFVVDKYTRRL 150
Query: 154 ISRYFDIIKPAPLYHKTIKNYARKITSTSRPGDFVQAMMDLGALICTSNKPLCPLCPIQK 213
+SR I + Y + + + + R A++ A KPLC CP+++
Sbjct: 151 LSRLGGIEEKK--YDEIKELFEENLPENLRLYQEFHALIVEHAKHFCKKKPLCEKCPLKE 208
Query: 214 NCLTFSE 220
C +
Sbjct: 209 KCKKYRR 215
>gnl|CDD|30471 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA
glycosylase [DNA replication, recombination, and
repair].
Length = 285
Score = 45.8 bits (108), Expect = 2e-05
Identities = 28/155 (18%), Positives = 50/155 (32%), Gaps = 20/155 (12%)
Query: 23 LPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPYFKKFMQKWPTIFCLSSAK---- 78
LP +P P P++ + I+ QQ +V + + + + + +
Sbjct: 89 LPLLRAPGLRLPLAPDPFEALVRAILSQQVSVAAAAKIWARLVSLYGNALEIYHSFPTPE 148
Query: 79 -----DEEILSAWAGLGYYTRARNLKKCADIIVKK-------YEGNFPHKVEILKKLPGI 126
DEE L G +A + A + + +E L L GI
Sbjct: 149 QLAAADEEALRRCGLSGR--KAEYIISLARAAAEGELDLSELKPLSDEEAIEELTALKGI 206
Query: 127 GDYTASAIVAIAFNHFAV--VVDTNIERIISRYFD 159
G +TA + V D + R I + +
Sbjct: 207 GPWTAEMFLLFGLGRPDVFPADDLGLRRAIKKLYR 241
>gnl|CDD|38086 KOG2875, KOG2875, KOG2875, 8-oxoguanine DNA glycosylase
[Replication, recombination and repair].
Length = 323
Score = 43.4 bits (102), Expect = 1e-04
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 14/102 (13%)
Query: 68 WPTIFCLSSAKDEEILSAWAGLGYYTRARNLKKCADIIVKKYEGN----------FPHKV 117
+P++ L+ + E L G GY RA+ + A + +K G +
Sbjct: 161 FPSLQALAGPEVEAELRK-LGFGY--RAKYISATARALQEKQGGLAWLQSLRKSSYEEAR 217
Query: 118 EILKKLPGIGDYTASAIVAIAF-NHFAVVVDTNIERIISRYF 158
E L LPG+G A I ++ AV VD +I RI Y
Sbjct: 218 EALCSLPGVGPKVADCICLMSLDKLSAVPVDVHIWRIAQDYI 259
>gnl|CDD|109681 pfam00633, HHH, Helix-hairpin-helix motif. The helix-hairpin-helix
DNA-binding motif is found to be duplicated in the
central domain of RuvA. The HhH domain of DisA, a
bacterial checkpoint control protein, is a DNA-binding
domain.
Length = 30
Score = 39.3 bits (93), Expect = 0.002
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 108 KYEGNFPHKVEILKKLPGIGDYTASAIVAI 137
EG P E L LPG+G TA AI++
Sbjct: 1 SLEGLIPASREELLALPGVGPKTAEAILSY 30
>gnl|CDD|72883 cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase
is a prototypical Nudix hydrolase that catalyzes the
hydrolysis of nucleoside and deoxynucleoside
triphosphates (NTPs and dNTPs) by substitution at a
beta-phosphorus to yield a nucleotide monophosphate
(NMP) and inorganic pyrophosphate (PPi). This enzyme
requires two divalent cations for activity; one
coordinates the phosphoryl groups of the NTP/dNTP
substrate, and the other coordinates to the enzyme. It
also contains the Nudix motif, a highly conserved
23-residue block (GX5EX7REUXEEXGU, where U = I, L or V),
that functions as metal binding and catalytic site. MutT
pyrophosphohydrolase is important in preventing errors
in DNA replication by hydrolyzing mutagenic nucleotides
such as 8-oxo-dGTP (a product of oxidative damage),
which can mispair with template adenine during DNA
replication, to guanine nucleotides..
Length = 124
Score = 34.0 bits (78), Expect = 0.066
Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 26/118 (22%)
Query: 241 AVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTA--------- 291
I I +D RIL+ +R + L G+ E PG G ++ P A
Sbjct: 4 VAAIIIDDDGRILIAQRPAGKHLGGLWEFPG--------GKVEPGETPEQALVRELREEL 55
Query: 292 -----NWILCNTITHTFTHFTLTLFVWKTIV----PQIVIIPDSTWHDAQNLANAALP 340
L T+ H + +TL V+ + PQ++ + W + L + P
Sbjct: 56 GIEVEVGELLATVEHDYPDKRVTLHVFLVELWSGEPQLLEHQELRWVPPEELDDLDFP 113
>gnl|CDD|144032 pfam00293, NUDIX, NUDIX domain.
Length = 133
Score = 29.8 bits (67), Expect = 1.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 238 RTGAVFIAITN-DNRILLRKRTNTRLLEGMDELPG 271
R AV + + N D +LL +R+ T G+ ELPG
Sbjct: 1 RRRAVGVVLLNEDGEVLLVRRSRTPGTPGLWELPG 35
>gnl|CDD|31744 COG1555, ComEA, DNA uptake protein and related DNA-binding proteins
[DNA replication, recombination, and repair].
Length = 149
Score = 28.5 bits (63), Expect = 2.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 117 VEILKKLPGIGDYTASAIVA 136
E L+ LPGIG A AI+
Sbjct: 96 AEELQALPGIGPKKAQAIID 115
>gnl|CDD|30358 COG0008, GlnS, Glutamyl- and glutaminyl-tRNA synthetases
[Translation, ribosomal structure and biogenesis].
Length = 472
Score = 28.4 bits (63), Expect = 2.9
Identities = 13/75 (17%), Positives = 21/75 (28%), Gaps = 18/75 (24%)
Query: 141 HFAVVVDTNIERI------------------ISRYFDIIKPAPLYHKTIKNYARKITSTS 182
+FAVVVD ++ I + P + + N K S
Sbjct: 195 NFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLNEDGKKLSKR 254
Query: 183 RPGDFVQAMMDLGAL 197
+ + G L
Sbjct: 255 KGAVSIGEYRVEGWL 269
>gnl|CDD|37217 KOG2006, KOG2006, KOG2006, WD40 repeat protein [General function
prediction only].
Length = 1023
Score = 28.0 bits (62), Expect = 3.6
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 147 DTNIERIISRYFDIIKPAPLYHKTIKNYARK 177
D + +I D I+ P + KT+ N ARK
Sbjct: 719 DKLLPKI----IDFIREFPEFLKTVVNCARK 745
>gnl|CDD|145490 pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family.
Transposases are needed for efficient transposition of
the insertion sequence or transposon DNA. This family
includes transposases for IS116, IS110 and IS902. This
region is often found with pfam01548. The exact function
of this region is uncertain. This family contains a HHH
motif suggesting a DNA-binding function.
Length = 87
Score = 28.3 bits (64), Expect = 3.7
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 117 VEILKKLPGIGDYTASAIVA 136
E+L +PGIG TA+A++A
Sbjct: 1 AELLLSIPGIGPITAAALLA 20
>gnl|CDD|39373 KOG4171, KOG4171, KOG4171, Adenylate/guanylate kinase [Nucleotide
transport and metabolism].
Length = 671
Score = 27.6 bits (61), Expect = 6.2
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 295 LCNTITHTFTHFTLTLFVWK--TIVPQIVI---IPDSTWHDAQNLANAALPTVMKKA 346
+ N + F T V+K TI ++ +PD++ + A+++A+ AL +M++A
Sbjct: 468 MLNELYTRFDRIIDTHDVYKVETIGDAYMVVSGLPDASDYHAEHIADLAL-GMMEEA 523
>gnl|CDD|33463 COG3665, COG3665, Uncharacterized conserved protein [Function
unknown].
Length = 264
Score = 27.2 bits (60), Expect = 7.9
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 4/39 (10%)
Query: 179 TSTSRPGDFVQ--AMMDLGALICTSNKPLCPLCPIQKNC 215
T SRPGD+V+ A MDL ++ S P I
Sbjct: 203 TPPSRPGDYVELRAEMDL--IVVLSACPGGNDPAIGWAP 239
>gnl|CDD|144985 pfam01601, Corona_S2, Coronavirus S2 glycoprotein. The coronavirus
spike glycoprotein forms the characteristic 'corona'
after which the group is named. The Spike glycoprotein
is translated as a large polypeptide that is
subsequently cleaved to S1 pfam01600 and S2.
Length = 609
Score = 26.9 bits (60), Expect = 8.1
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 23/66 (34%)
Query: 87 AGLGYYTRARNLKKC------ADII-VKKYEGNFPHKVEILKKLPGIGD------YTASA 133
+GLG T + KKC AD+I + Y G + LP + D YTAS
Sbjct: 162 SGLG--TVDEDYKKCTGGGSIADLICAQYYNG--------IMVLPPVVDAEMMAMYTASL 211
Query: 134 IVAIAF 139
+ A+A
Sbjct: 212 VGAMAL 217
>gnl|CDD|30702 COG0353, RecR, Recombinational DNA repair protein (RecF pathway)
[DNA replication, recombination, and repair].
Length = 198
Score = 26.7 bits (59), Expect = 9.2
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 107 KKYEGNFPHKVEILKKLPGIGDYTASAI 134
Y ++ LKKLPG+G +A +
Sbjct: 1 MMYPPPIEKLIDALKKLPGVGPKSAQRL 28
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.321 0.135 0.421
Gapped
Lambda K H
0.267 0.0758 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,485,476
Number of extensions: 234637
Number of successful extensions: 557
Number of sequences better than 10.0: 1
Number of HSP's gapped: 533
Number of HSP's successfully gapped: 27
Length of query: 356
Length of database: 6,263,737
Length adjustment: 95
Effective length of query: 261
Effective length of database: 4,210,882
Effective search space: 1099040202
Effective search space used: 1099040202
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)