BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780479|ref|YP_003064892.1| A/G-specific adenine glycosylase [Candidatus Liberibacter asiaticus str. psy62] (356 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780479|ref|YP_003064892.1| A/G-specific adenine glycosylase [Candidatus Liberibacter asiaticus str. psy62] Length = 356 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/356 (100%), Positives = 356/356 (100%) Query: 1 MPQPEHIIQSKILDWYDTNHRVLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPY 60 MPQPEHIIQSKILDWYDTNHRVLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPY Sbjct: 1 MPQPEHIIQSKILDWYDTNHRVLPWRTSPKTEKSSLPSPYKVWISEIMLQQTTVKTVEPY 60 Query: 61 FKKFMQKWPTIFCLSSAKDEEILSAWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEIL 120 FKKFMQKWPTIFCLSSAKDEEILSAWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEIL Sbjct: 61 FKKFMQKWPTIFCLSSAKDEEILSAWAGLGYYTRARNLKKCADIIVKKYEGNFPHKVEIL 120 Query: 121 KKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIKPAPLYHKTIKNYARKITS 180 KKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIKPAPLYHKTIKNYARKITS Sbjct: 121 KKLPGIGDYTASAIVAIAFNHFAVVVDTNIERIISRYFDIIKPAPLYHKTIKNYARKITS 180 Query: 181 TSRPGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSEGKSHLLGINTIKKKRPMRTG 240 TSRPGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSEGKSHLLGINTIKKKRPMRTG Sbjct: 181 TSRPGDFVQAMMDLGALICTSNKPLCPLCPIQKNCLTFSEGKSHLLGINTIKKKRPMRTG 240 Query: 241 AVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCNTIT 300 AVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCNTIT Sbjct: 241 AVFIAITNDNRILLRKRTNTRLLEGMDELPGSAWSSTKDGNIDTHSAPFTANWILCNTIT 300 Query: 301 HTFTHFTLTLFVWKTIVPQIVIIPDSTWHDAQNLANAALPTVMKKALSAGGIKVPQ 356 HTFTHFTLTLFVWKTIVPQIVIIPDSTWHDAQNLANAALPTVMKKALSAGGIKVPQ Sbjct: 301 HTFTHFTLTLFVWKTIVPQIVIIPDSTWHDAQNLANAALPTVMKKALSAGGIKVPQ 356 >gi|254780383|ref|YP_003064796.1| endonuclease III [Candidatus Liberibacter asiaticus str. psy62] Length = 227 Score = 51.2 bits (121), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 3/125 (2%) Query: 91 YYTRARNLKKCADIIVKKYEGNFPHKVEILKKLPGIGDYTASAIVAIAFNHFAVVVDTNI 150 Y ++ N+ + I++ +++ P +E L +LPGIG A+ I+++AF + VDT+I Sbjct: 101 YRKKSENIISLSHILINEFDNKIPQTLEGLTRLPGIGRKGANVILSMAFGIPTIGVDTHI 160 Query: 151 ERIISRYFDIIKPAPLYHKTIKNYARKITSTSRPGDFVQAMMDLGALICTSNKPLCPLCP 210 RI +R + P +K ++ R I + ++ G +C + KP C C Sbjct: 161 FRISNRIG--LAPGKTPNKVEQSLLRIIPPKHQYNAHYWLVLH-GRYVCKARKPQCQSCI 217 Query: 211 IQKNC 215 I C Sbjct: 218 ISNLC 222 >gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 652 Score = 23.5 bits (49), Expect = 5.2, Method: Compositional matrix adjust. Identities = 8/25 (32%), Positives = 14/25 (56%) Query: 318 PQIVIIPDSTWHDAQNLANAALPTV 342 P+ + D+ W DA+N+ L T+ Sbjct: 431 PEKRVGSDALWDDAENIMKGVLDTI 455 >gi|254781009|ref|YP_003065422.1| hypothetical protein CLIBASIA_04555 [Candidatus Liberibacter asiaticus str. psy62] Length = 750 Score = 23.5 bits (49), Expect = 5.9, Method: Compositional matrix adjust. Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%) Query: 144 VVVDTNIERIISRYF-DIIKPAPLYHKTIKNYAR-KITSTSRPGDFVQ 189 ++ D IE+I+S YF + I P+ + +NY + I S S DF++ Sbjct: 227 ILTDMQIEKIVSNYFNNTIDCVPIV--SDQNYYKLAINSVSSFSDFLK 272 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.321 0.135 0.421 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 228,073 Number of Sequences: 1233 Number of extensions: 9032 Number of successful extensions: 19 Number of sequences better than 100.0: 5 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 15 Number of HSP's gapped (non-prelim): 5 length of query: 356 length of database: 328,796 effective HSP length: 75 effective length of query: 281 effective length of database: 236,321 effective search space: 66406201 effective search space used: 66406201 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 39 (19.6 bits)