HHsearch results for GI: 254780480 and protein with PDBid: 1f7d_A

>1f7d_A POL polyprotein; eight stranded beta-barrel, viral protein, hydrolase; 1.40A {Feline immunodeficiency virus} SCOP: b.85.4.1 PDB: 1f7k_A* 1f7n_A* 1f7o_A 1f7p_A* 1f7q_A* 1f7r_A* 1dut_A
Probab=99.49  E-value=9.4e-14  Score=108.19  Aligned_cols=85  Identities=19%  Similarity=0.169  Sum_probs=76.7

Q ss_pred             CCCCEEECCCCEEEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCC-CCEEEE
Q ss_conf             6886486687329999888998499827998601343112503423207877554236674438999951686-527983
Q gi|254780480|r   73 LSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGPLYLEILPRT-FPIVVR  151 (367)
Q Consensus        73 l~~g~vLepg~~yLv~t~E~i~LP~di~a~~~pKSS~GRLgif~r~i~~~~~~f~~id~Gy~G~l~lEI~~~s-fpI~v~  151 (367)
                      ..+..+|+|++.++++|.+++.+|.+..+.+.||||++|.||.++.        ..||+||+|+|++.+.|.+ .|+.+.
T Consensus        22 ~~e~~~i~P~~~~~i~Tg~~i~~p~~~~~~i~~RSsl~~~gl~v~~--------GvID~gY~Gei~v~l~N~~~~~~~i~   93 (136)
T 1f7d_A           22 AAKEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKGLDVLG--------GVIDEGYRGEIGVIMINVSRKSITLM   93 (136)
T ss_dssp             CSSCEEECTTCEEEEECCCEECCCTTEEEEEECCHHHHTTTEEEEC--------CEECTTCCSCCEEEEEECSSSCEEEC
T ss_pred             CCCCEEECCCCEEEEECCEEEECCCCCEEEEECCCCHHCEEEEEEE--------EEECCCCCCEEEEEEEECCCCCEEEC
T ss_conf             5988899999899997897998597759999826723120478655--------57888777668999999999988837


Q ss_pred             CCCEEEEEEEEECC
Q ss_conf             39803568985088
Q gi|254780480|r  152 VGSRLSQIRFVKER  165 (367)
Q Consensus       152 ~G~rl~Qi~f~~g~  165 (367)
                      +|+||+||.|.+-.
T Consensus        94 ~G~riaQlv~~~~~  107 (136)
T 1f7d_A           94 ERQKIAQLIILPCK  107 (136)
T ss_dssp             TTCEEEEEEEEECC
T ss_pred             CCCEEEEEEEECCC
T ss_conf             99989999995157