HHsearch results for GI: 254780480 and protein with PDBid: 1f7d_A
>1f7d_A POL polyprotein; eight stranded beta-barrel, viral protein, hydrolase; 1.40A {Feline immunodeficiency virus} SCOP: b.85.4.1 PDB: 1f7k_A* 1f7n_A* 1f7o_A 1f7p_A* 1f7q_A* 1f7r_A* 1dut_A
Probab=99.49 E-value=9.4e-14 Score=108.19 Aligned_cols=85 Identities=19% Similarity=0.169 Sum_probs=76.7
Q ss_pred CCCCEEECCCCEEEEEEEEEEECCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEECCCC-CCEEEE
Q ss_conf 6886486687329999888998499827998601343112503423207877554236674438999951686-527983
Q gi|254780480|r 73 LSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGPLYLEILPRT-FPIVVR 151 (367)
Q Consensus 73 l~~g~vLepg~~yLv~t~E~i~LP~di~a~~~pKSS~GRLgif~r~i~~~~~~f~~id~Gy~G~l~lEI~~~s-fpI~v~ 151 (367)
..+..+|+|++.++++|.+++.+|.+..+.+.||||++|.||.++. ..||+||+|+|++.+.|.+ .|+.+.
T Consensus 22 ~~e~~~i~P~~~~~i~Tg~~i~~p~~~~~~i~~RSsl~~~gl~v~~--------GvID~gY~Gei~v~l~N~~~~~~~i~ 93 (136)
T 1f7d_A 22 AAKEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKGLDVLG--------GVIDEGYRGEIGVIMINVSRKSITLM 93 (136)
T ss_dssp CSSCEEECTTCEEEEECCCEECCCTTEEEEEECCHHHHTTTEEEEC--------CEECTTCCSCCEEEEEECSSSCEEEC
T ss_pred CCCCEEECCCCEEEEECCEEEECCCCCEEEEECCCCHHCEEEEEEE--------EEECCCCCCEEEEEEEECCCCCEEEC
T ss_conf 5988899999899997897998597759999826723120478655--------57888777668999999999988837
Q ss_pred CCCEEEEEEEEECC
Q ss_conf 39803568985088
Q gi|254780480|r 152 VGSRLSQIRFVKER 165 (367)
Q Consensus 152 ~G~rl~Qi~f~~g~ 165 (367)
+|+||+||.|.+-.
T Consensus 94 ~G~riaQlv~~~~~ 107 (136)
T 1f7d_A 94 ERQKIAQLIILPCK 107 (136)
T ss_dssp TTCEEEEEEEEECC
T ss_pred CCCEEEEEEEECCC
T ss_conf 99989999995157