HHsearch results for GI: 254780480 and protein with PDBid: 1f7d_A
>1f7d_A POL polyprotein; eight stranded beta-barrel, viral protein, hydrolase; 1.40A {Feline immunodeficiency virus} SCOP: b.85.4.1 PDB: 1f7k_A* 1f7n_A* 1f7o_A 1f7p_A* 1f7q_A* 1f7r_A* 1dut_A
Probab=98.94 E-value=5.3e-09 Score=77.18 Aligned_cols=84 Identities=19% Similarity=0.188 Sum_probs=66.5
Q ss_pred EEEECCCCEEEEEEEEEEECCCCCEEEE--EEECCCCCCEEEECCEEECCCCCCCCCCCCCCEEEEEECCCCCEEEECCC
Q ss_conf 3998899789998633444283401644--53043334213421604568866543456675047886178888994798
Q gi|254780480|r 249 QFILDPNEFYIFASREFIQIPPSLVAEM--IPYDHSIGEFRVHYAGFFDPGFGCVLPQEVGAKAVLEVRSSVPFVLEHGQ 326 (367)
Q Consensus 249 ~~~l~p~~F~l~~s~E~v~iP~~~aae~--~~~~~~~g~~r~h~AGf~DpGf~~~~~~~~~~~~vLevr~~~p~~l~~g~ 326 (367)
.++|+|++.++..|.+++.+|+++++.. |++..+-| ..++ +|.+||||.|.+.. .|-+.++.|+.++.|+
T Consensus 25 ~~~i~P~~~~~i~Tg~~i~~p~~~~~~i~~RSsl~~~g-l~v~-~GvID~gY~Gei~v------~l~N~~~~~~~i~~G~ 96 (136)
T 1f7d_A 25 EIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKG-LDVL-GGVIDEGYRGEIGV------IMINVSRKSITLMERQ 96 (136)
T ss_dssp CEEECTTCEEEEECCCEECCCTTEEEEEECCHHHHTTT-EEEE-CCEECTTCCSCCEE------EEEECSSSCEEECTTC
T ss_pred CEEECCCCEEEEECCEEEECCCCCEEEEECCCCHHCEE-EEEE-EEEECCCCCCEEEE------EEEECCCCCEEECCCC
T ss_conf 88999998999978979985977599998267231204-7865-55788877766899------9999999988837999
Q ss_pred EEEEEEEEECCCCC
Q ss_conf 88999997637664
Q gi|254780480|r 327 IIGRLKYESMDGEP 340 (367)
Q Consensus 327 ~i~~l~~~~~~~~p 340 (367)
+||||+|.+.....
T Consensus 97 riaQlv~~~~~~~~ 110 (136)
T 1f7d_A 97 KIAQLIILPCKHEV 110 (136)
T ss_dssp EEEEEEEEECCCCC
T ss_pred EEEEEEEECCCEEE
T ss_conf 89999995157157