RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780480|ref|YP_003064893.1| 2'-deoxycytidine 5'-triphosphate deaminase [Candidatus Liberibacter asiaticus str. psy62] (367 letters) >gnl|CDD|181028 PRK07559, PRK07559, 2'-deoxycytidine 5'-triphosphate deaminase; Provisional. Length = 365 Score = 616 bits (1590), Expect = e-177 Identities = 217/366 (59%), Positives = 255/366 (69%), Gaps = 8/366 (2%) Query: 1 MNKGVLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVS 60 G+LPD+AIA L G I SE PL+ +QIQPAS+DLRL +KAYRVRASFLP V+ Sbjct: 6 RAAGILPDQAIAALIASGAITSERPLDDDQIQPASLDLRLGAKAYRVRASFLPGPGRTVA 65 Query: 61 DKIKHFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIG 120 D++ KL EIDL+ G VL+ CVYIVPL+ESL L +SA ANPKSS GR+DVF RVI Sbjct: 66 DRLDRLKLHEIDLTDGAVLETGCVYIVPLLESLALPADLSASANPKSSTGRLDVFTRVIT 125 Query: 121 DRSQEFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVKERKFCSQEELSALHELS 180 D +QEFD I Y GPLY EI PRTFPI+VR GSRLSQIRF + S EL+ALH Sbjct: 126 DGAQEFDKIPAGYHGPLYAEISPRTFPILVRTGSRLSQIRFRRGEARLSDAELAALHAAE 185 Query: 181 PLVQDGLRDFSGKGVALSVDLKGNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPL 240 PLV SG G+ALSVDL G E G ++GYRAKRHT IDVD +D DFW+PL Sbjct: 186 PLVDGEDP--SGGGIALSVDLSGGEDG---LVGYRAKRHTGVIDVDRIGAHDVLDFWEPL 240 Query: 241 FSWDAPEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGC 300 ++ +G+ ILDP EFYI ASRE + +PP AEM+P+D +GEFRVHYAGFFDPGFG Sbjct: 241 YAR--GDGELILDPGEFYILASREAVHVPPDYAAEMVPFDPLVGEFRVHYAGFFDPGFGH 298 Query: 301 VLPQEVGAKAVLEVRS-SVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQALKL 359 G++AVLEVRS VPF+LEHGQI+GRL YE M P+ LYG GS+YQ Q LKL Sbjct: 299 AEAGGTGSRAVLEVRSHEVPFILEHGQIVGRLVYERMLERPDALYGAGLGSNYQGQGLKL 358 Query: 360 SKHFHQ 365 SKHF Sbjct: 359 SKHFRA 364 >gnl|CDD|148267 pfam06559, DCD, 2'-deoxycytidine 5'-triphosphate deaminase (DCD). This family consists of several bacterial 2'-deoxycytidine 5'-triphosphate deaminase proteins (EC:3.5.4.13). Length = 366 Score = 501 bits (1291), Expect = e-142 Identities = 206/362 (56%), Positives = 245/362 (67%), Gaps = 9/362 (2%) Query: 4 GVLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKI 63 G+LPD+AIA L G I ++ PL+ +QIQPAS+DLRL ++AYRVRASFLP V++++ Sbjct: 10 GILPDRAIAALIAAGAITADAPLDPDQIQPASLDLRLGTRAYRVRASFLPGPGRTVAERL 69 Query: 64 KHFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRS 123 F L E+DL+ G VL+ CVY+VPL E L L ISA ANPKSS GR+DVF RVI D Sbjct: 70 DDFALHEVDLTDGAVLETGCVYLVPLQEGLALPADISAAANPKSSTGRLDVFTRVITDGG 129 Query: 124 QEFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVKERKFCSQEELSALHELSPLV 183 +EFD I Y GPLY EI PRTF ++VR GSRLSQIRF + S EL+ALH PLV Sbjct: 130 REFDRIPAGYDGPLYAEISPRTFSVLVRPGSRLSQIRFRRGEATLSDAELAALHAREPLV 189 Query: 184 QDGLRDFSGKGVALSVDLKGNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPLFSW 243 G+ALSVDL G G ++GYRAKRHT ID+D YD +DFW+PL Sbjct: 190 DGA--PVIDGGLALSVDLAGE--GGDGLVGYRAKRHTGVIDLDRIGAYDPADFWEPLH-- 243 Query: 244 DAPEGQF-ILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGCVL 302 A +G+ ILDP EFYI SRE + IPP AEM P+D +GEFRVHYAGFFDPGFG Sbjct: 244 -ARDGRELILDPGEFYILVSREAVHIPPDYAAEMAPFDPLVGEFRVHYAGFFDPGFGHAA 302 Query: 303 PQEVGAKAVLEVRS-SVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQALKLSK 361 G++AVLEVRS VPF+LEHGQI+GRL YE M P LYG GS+YQ Q LKLSK Sbjct: 303 AGGAGSRAVLEVRSHEVPFILEHGQIVGRLVYERMAARPATLYGAGLGSNYQGQGLKLSK 362 Query: 362 HF 363 HF Sbjct: 363 HF 364 >gnl|CDD|162793 TIGR02274, dCTP_deam, deoxycytidine triphosphate deaminase. Members of this family include the Escherichia coli monofunctional deoxycytidine triphosphate deaminase (dCTP deaminase) and a Methanocaldococcus jannaschii bifunctional dCTP deaminase (3.5.4.13)/dUTP diphosphatase (EC 3.6.1.23), which has the EC number 3.5.4.30 for the overall operation. Length = 179 Score = 65.0 bits (159), Expect = 3e-11 Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 9/160 (5%) Query: 5 VLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIK 64 +L D+ I E G + E PL++ Q+QPA +DLRL ++ R ID + K Sbjct: 1 ILSDRDIKRWLEEGLLKIE-PLDEEQLQPAGVDLRLGNEFRVFRNHTGAVID-PENPKEA 58 Query: 65 HFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQ 124 L E++ V+ + +E + L + + + +SS+ R+ +F V R Sbjct: 59 VSYLFEVEEGEEFVIPPGEFALATTLEYVKLPDDVVGFLEGRSSLARLGLFIHVTAGR-- 116 Query: 125 EFDSISPNYSGPLYLEILPRT-FPIVVRVGSRLSQIRFVK 163 I P + G + LE+ P+ +R G R++Q+ F + Sbjct: 117 ----IDPGFEGNITLELFNAGKLPVKLRPGMRIAQLVFER 152 Score = 51.5 bits (124), Expect = 3e-07 Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 34/167 (20%) Query: 198 SVDLK-GNEIGKKSIIGYRAKRHTAA-IDVDSENKYDESDFWDPLFSWDAPEGQ-FILDP 254 VDL+ GNE + HT A ID ++ + F + EG+ F++ P Sbjct: 30 GVDLRLGNEF-------RVFRNHTGAVIDPENPKEAVSYLF-------EVEEGEEFVIPP 75 Query: 255 NEFYIFASREFIQIPPSLVAEMIPYDHSIGEF--RVH-YAGFFDPGF-GCVLPQEVGAKA 310 EF + + E++++P +V + S+ +H AG DPGF G + Sbjct: 76 GEFALATTLEYVKLPDDVVG-FLEGRSSLARLGLFIHVTAGRIDPGFEGNI--------- 125 Query: 311 VLEV--RSSVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQ 355 LE+ +P L G I +L +E + ER Y R YQ Q Sbjct: 126 TLELFNAGKLPVKLRPGMRIAQLVFERLSSPAERPYNG-RSGKYQGQ 171 >gnl|CDD|179014 PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed. Length = 177 Score = 42.8 bits (102), Expect = 1e-04 Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 29/123 (23%) Query: 244 DAPEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYA--GFF------D 295 D FIL P EF + + E+ ++P +V I E R A G D Sbjct: 65 DIEGEVFILPPGEFALARTLEYFKLPDDVVG--------ILEGRSSLARLGLIVHVTAID 116 Query: 296 PGF-GCVLPQEVGAKAVLEV--RSSVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHY 352 PG+ G + LE +P L G+ IG+L + + ER Y + RG Y Sbjct: 117 PGWEGHI---------TLEFSNSGPLPVKLYPGEGIGQLLFFELSEPAERPYND-RGGKY 166 Query: 353 QSQ 355 Q Q Sbjct: 167 QGQ 169 Score = 40.5 bits (96), Expect = 7e-04 Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 20/164 (12%) Query: 5 VLPDKAIATLAERGDIVSEHPLEKNQIQP--ASIDLRLSSKAYRVRASFLPNIDGLVSDK 62 +L D+ I + E G ++ E P + +Q++P DLRL ++ N++ V D Sbjct: 2 ILSDRDIRKMLEEGRLMIE-PFDPDQVRPNATGYDLRLGNEFRVFT-----NVNSTVIDP 55 Query: 63 IKHFKLREIDLSG-GTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARV-IG 120 +D+ G +L + +E L + + +SS+ R+ + V Sbjct: 56 KNFDPDSFVDIEGEVFILPPGEFALARTLEYFKLPDDVVGILEGRSSLARLGLIVHVTAI 115 Query: 121 DRSQEFDSISPNYSGPLYLEIL-PRTFPIVVRVGSRLSQIRFVK 163 D P + G + LE P+ + G + Q+ F + Sbjct: 116 D---------PGWEGHITLEFSNSGPLPVKLYPGEGIGQLLFFE 150 >gnl|CDD|107053 PHA01707, dut, 2'-deoxyuridine 5'-triphosphatase. Length = 158 Score = 34.5 bits (79), Expect = 0.043 Identities = 32/164 (19%), Positives = 69/164 (42%), Gaps = 37/164 (22%) Query: 5 VLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIK 64 +L D+ I +G +V E PL ++ I+ +DL++ ++ R++ N++ V D+ Sbjct: 2 ILSDRDIKYYINKGWLVIE-PLSEDTIRENGVDLKIGNEIVRIKE----NMEKEVGDEF- 55 Query: 65 HFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQ 124 ++ + ++ E + L N I A+ N +S+ R + Sbjct: 56 -------------IIYPHEHVLLTTKEYIKLPNDIIAFCNLRSTFARKGLL--------- 93 Query: 125 EFDSISPN-----YSGPLYLEILPRTFPIVVRVGSRLSQIRFVK 163 I P + G L +E++ + P+ ++ G R + F + Sbjct: 94 ----IPPTIVDAGFEGQLTIELVGSSIPVKLKSGERFLHLIFAR 133 >gnl|CDD|179395 PRK02253, PRK02253, deoxyuridine 5'-triphosphate nucleotidohydrolase; Provisional. Length = 167 Score = 34.2 bits (79), Expect = 0.059 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 9/101 (8%) Query: 14 LAERGDIVSEH--PLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIKHFKLREI 71 L G V+EH LE +Q+QP +DL L + + + + ++ + Sbjct: 11 LIRSGKFVAEHVVDLEDDQVQPNGVDLTLGEVEEQEGPGRIDFDNRKLPER------EPL 64 Query: 72 DL-SGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGR 111 + G + +Y V E +N+ +A P+SS+ R Sbjct: 65 EFDDDGWIRLEPGIYKVRYNEVVNIPEDHVGFAYPRSSLLR 105 >gnl|CDD|148467 pfam06868, DUF1257, Protein of unknown function (DUF1257). This family contains hypothetical proteins of unknown function that are approximately 120 residues long. Family members include eukaryotic and bacterial proteins. Length = 104 Score = 29.9 bits (68), Expect = 1.1 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 6/49 (12%) Query: 205 EIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPLFSWDAPEGQFILD 253 + G++ + GYR + A I + N YD F W+ E + + D Sbjct: 11 KEGEQPVRGYRGQTTRADIVIPQNNGYDIG------FRWNGDEYELVAD 53 >gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional. Length = 699 Score = 28.1 bits (62), Expect = 4.1 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%) Query: 35 SIDLRLSSKAYRVRASFLPNIDGLVSDKIKHFKLREIDLSGGTVLDANCVYIVPLMESLN 94 SID +LS Y + ++ GLVS K K K E D S LD N + IV +E + Sbjct: 93 SIDEKLSDLPYLIARKIRDSLAGLVSAKFKAEKQEEKDFS-RLALDCNEIKIVLHIEMPS 151 Query: 95 LKN 97 +++ Sbjct: 152 IRS 154 >gnl|CDD|149728 pfam08758, Cadherin_pro, Cadherin prodomain like. Cadherins are a family of proteins that mediate calcium dependent cell-cell adhesion. They are activated through cleavage of a prosequence in the late Golgi. This domain corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions. Length = 90 Score = 27.2 bits (61), Expect = 7.1 Identities = 11/28 (39%), Positives = 14/28 (50%) Query: 317 SVPFVLEHGQIIGRLKYESMDGEPERLY 344 VP LE GQ +GR+K+ G Y Sbjct: 14 LVPRRLEEGQPLGRVKFNDCKGRRRIQY 41 >gnl|CDD|149347 pfam08234, Spindle_Spc25, Chromosome segregation protein Spc25. This is a family of chromosome segregation proteins. It contains Spc25, which is a conserved eukaryotic kinetochore protein involved in cell division. In fungi the Spc25 protein is a subunit of the Nuf2-Ndc80 complex, and in vertebrates it forms part of the Ndc80 complex. Length = 74 Score = 27.1 bits (61), Expect = 7.5 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 2/37 (5%) Query: 27 EKNQIQPASIDLRLSSKAYRVRASF--LPNIDGLVSD 61 K+ + S L LS Y V L +++ LV + Sbjct: 18 PKDPDREFSFTLDLSEDTYEVIDCDPKLEDLEELVEE 54 >gnl|CDD|162461 TIGR01646, vgr_GE, Rhs element Vgr protein. This model represents the Vgr family of proteins, associated with some classes of Rhs elements. This model does not include a large octapeptide repeat region, VGXXXXXX, found in the Vgr of Rhs classes G and E. Length = 483 Score = 26.7 bits (59), Expect = 9.5 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%) Query: 323 EHGQIIGRLKYESMDGEPERLYGEARGSHYQS-QALKLSKHFHQTQ 367 +HG++ RL+ E++ ++ GE + Q LS H Q Sbjct: 252 QHGELYARLRLEALQSRAAKIQGEGNAAGLAPGQLFVLSGHPRNDQ 297 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.138 0.404 Gapped Lambda K H 0.267 0.0727 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,196,146 Number of extensions: 412805 Number of successful extensions: 635 Number of sequences better than 10.0: 1 Number of HSP's gapped: 620 Number of HSP's successfully gapped: 15 Length of query: 367 Length of database: 5,994,473 Length adjustment: 95 Effective length of query: 272 Effective length of database: 3,941,713 Effective search space: 1072145936 Effective search space used: 1072145936 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.1 bits)