RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780480|ref|YP_003064893.1| 2'-deoxycytidine
5'-triphosphate deaminase [Candidatus Liberibacter asiaticus str.
psy62]
         (367 letters)



>gnl|CDD|181028 PRK07559, PRK07559, 2'-deoxycytidine 5'-triphosphate deaminase;
           Provisional.
          Length = 365

 Score =  616 bits (1590), Expect = e-177
 Identities = 217/366 (59%), Positives = 255/366 (69%), Gaps = 8/366 (2%)

Query: 1   MNKGVLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVS 60
              G+LPD+AIA L   G I SE PL+ +QIQPAS+DLRL +KAYRVRASFLP     V+
Sbjct: 6   RAAGILPDQAIAALIASGAITSERPLDDDQIQPASLDLRLGAKAYRVRASFLPGPGRTVA 65

Query: 61  DKIKHFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIG 120
           D++   KL EIDL+ G VL+  CVYIVPL+ESL L   +SA ANPKSS GR+DVF RVI 
Sbjct: 66  DRLDRLKLHEIDLTDGAVLETGCVYIVPLLESLALPADLSASANPKSSTGRLDVFTRVIT 125

Query: 121 DRSQEFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVKERKFCSQEELSALHELS 180
           D +QEFD I   Y GPLY EI PRTFPI+VR GSRLSQIRF +     S  EL+ALH   
Sbjct: 126 DGAQEFDKIPAGYHGPLYAEISPRTFPILVRTGSRLSQIRFRRGEARLSDAELAALHAAE 185

Query: 181 PLVQDGLRDFSGKGVALSVDLKGNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPL 240
           PLV       SG G+ALSVDL G E G   ++GYRAKRHT  IDVD    +D  DFW+PL
Sbjct: 186 PLVDGEDP--SGGGIALSVDLSGGEDG---LVGYRAKRHTGVIDVDRIGAHDVLDFWEPL 240

Query: 241 FSWDAPEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGC 300
           ++    +G+ ILDP EFYI ASRE + +PP   AEM+P+D  +GEFRVHYAGFFDPGFG 
Sbjct: 241 YAR--GDGELILDPGEFYILASREAVHVPPDYAAEMVPFDPLVGEFRVHYAGFFDPGFGH 298

Query: 301 VLPQEVGAKAVLEVRS-SVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQALKL 359
                 G++AVLEVRS  VPF+LEHGQI+GRL YE M   P+ LYG   GS+YQ Q LKL
Sbjct: 299 AEAGGTGSRAVLEVRSHEVPFILEHGQIVGRLVYERMLERPDALYGAGLGSNYQGQGLKL 358

Query: 360 SKHFHQ 365
           SKHF  
Sbjct: 359 SKHFRA 364


>gnl|CDD|148267 pfam06559, DCD, 2'-deoxycytidine 5'-triphosphate deaminase (DCD).
           This family consists of several bacterial
           2'-deoxycytidine 5'-triphosphate deaminase proteins
           (EC:3.5.4.13).
          Length = 366

 Score =  501 bits (1291), Expect = e-142
 Identities = 206/362 (56%), Positives = 245/362 (67%), Gaps = 9/362 (2%)

Query: 4   GVLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKI 63
           G+LPD+AIA L   G I ++ PL+ +QIQPAS+DLRL ++AYRVRASFLP     V++++
Sbjct: 10  GILPDRAIAALIAAGAITADAPLDPDQIQPASLDLRLGTRAYRVRASFLPGPGRTVAERL 69

Query: 64  KHFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRS 123
             F L E+DL+ G VL+  CVY+VPL E L L   ISA ANPKSS GR+DVF RVI D  
Sbjct: 70  DDFALHEVDLTDGAVLETGCVYLVPLQEGLALPADISAAANPKSSTGRLDVFTRVITDGG 129

Query: 124 QEFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVKERKFCSQEELSALHELSPLV 183
           +EFD I   Y GPLY EI PRTF ++VR GSRLSQIRF +     S  EL+ALH   PLV
Sbjct: 130 REFDRIPAGYDGPLYAEISPRTFSVLVRPGSRLSQIRFRRGEATLSDAELAALHAREPLV 189

Query: 184 QDGLRDFSGKGVALSVDLKGNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPLFSW 243
                     G+ALSVDL G   G   ++GYRAKRHT  ID+D    YD +DFW+PL   
Sbjct: 190 DGA--PVIDGGLALSVDLAGE--GGDGLVGYRAKRHTGVIDLDRIGAYDPADFWEPLH-- 243

Query: 244 DAPEGQF-ILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGCVL 302
            A +G+  ILDP EFYI  SRE + IPP   AEM P+D  +GEFRVHYAGFFDPGFG   
Sbjct: 244 -ARDGRELILDPGEFYILVSREAVHIPPDYAAEMAPFDPLVGEFRVHYAGFFDPGFGHAA 302

Query: 303 PQEVGAKAVLEVRS-SVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQALKLSK 361
               G++AVLEVRS  VPF+LEHGQI+GRL YE M   P  LYG   GS+YQ Q LKLSK
Sbjct: 303 AGGAGSRAVLEVRSHEVPFILEHGQIVGRLVYERMAARPATLYGAGLGSNYQGQGLKLSK 362

Query: 362 HF 363
           HF
Sbjct: 363 HF 364


>gnl|CDD|162793 TIGR02274, dCTP_deam, deoxycytidine triphosphate deaminase.
           Members of this family include the Escherichia coli
           monofunctional deoxycytidine triphosphate deaminase
           (dCTP deaminase) and a Methanocaldococcus jannaschii
           bifunctional dCTP deaminase (3.5.4.13)/dUTP
           diphosphatase (EC 3.6.1.23), which has the EC number
           3.5.4.30 for the overall operation.
          Length = 179

 Score = 65.0 bits (159), Expect = 3e-11
 Identities = 42/160 (26%), Positives = 74/160 (46%), Gaps = 9/160 (5%)

Query: 5   VLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIK 64
           +L D+ I    E G +  E PL++ Q+QPA +DLRL ++    R      ID   + K  
Sbjct: 1   ILSDRDIKRWLEEGLLKIE-PLDEEQLQPAGVDLRLGNEFRVFRNHTGAVID-PENPKEA 58

Query: 65  HFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQ 124
              L E++     V+      +   +E + L + +  +   +SS+ R+ +F  V   R  
Sbjct: 59  VSYLFEVEEGEEFVIPPGEFALATTLEYVKLPDDVVGFLEGRSSLARLGLFIHVTAGR-- 116

Query: 125 EFDSISPNYSGPLYLEILPRT-FPIVVRVGSRLSQIRFVK 163
               I P + G + LE+      P+ +R G R++Q+ F +
Sbjct: 117 ----IDPGFEGNITLELFNAGKLPVKLRPGMRIAQLVFER 152



 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 34/167 (20%)

Query: 198 SVDLK-GNEIGKKSIIGYRAKRHTAA-IDVDSENKYDESDFWDPLFSWDAPEGQ-FILDP 254
            VDL+ GNE           + HT A ID ++  +     F       +  EG+ F++ P
Sbjct: 30  GVDLRLGNEF-------RVFRNHTGAVIDPENPKEAVSYLF-------EVEEGEEFVIPP 75

Query: 255 NEFYIFASREFIQIPPSLVAEMIPYDHSIGEF--RVH-YAGFFDPGF-GCVLPQEVGAKA 310
            EF +  + E++++P  +V   +    S+      +H  AG  DPGF G +         
Sbjct: 76  GEFALATTLEYVKLPDDVVG-FLEGRSSLARLGLFIHVTAGRIDPGFEGNI--------- 125

Query: 311 VLEV--RSSVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQ 355
            LE+     +P  L  G  I +L +E +    ER Y   R   YQ Q
Sbjct: 126 TLELFNAGKLPVKLRPGMRIAQLVFERLSSPAERPYNG-RSGKYQGQ 171


>gnl|CDD|179014 PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed.
          Length = 177

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 35/123 (28%), Positives = 49/123 (39%), Gaps = 29/123 (23%)

Query: 244 DAPEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYA--GFF------D 295
           D     FIL P EF +  + E+ ++P  +V         I E R   A  G        D
Sbjct: 65  DIEGEVFILPPGEFALARTLEYFKLPDDVVG--------ILEGRSSLARLGLIVHVTAID 116

Query: 296 PGF-GCVLPQEVGAKAVLEV--RSSVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHY 352
           PG+ G +          LE      +P  L  G+ IG+L +  +    ER Y + RG  Y
Sbjct: 117 PGWEGHI---------TLEFSNSGPLPVKLYPGEGIGQLLFFELSEPAERPYND-RGGKY 166

Query: 353 QSQ 355
           Q Q
Sbjct: 167 QGQ 169



 Score = 40.5 bits (96), Expect = 7e-04
 Identities = 34/164 (20%), Positives = 65/164 (39%), Gaps = 20/164 (12%)

Query: 5   VLPDKAIATLAERGDIVSEHPLEKNQIQP--ASIDLRLSSKAYRVRASFLPNIDGLVSDK 62
           +L D+ I  + E G ++ E P + +Q++P     DLRL ++          N++  V D 
Sbjct: 2   ILSDRDIRKMLEEGRLMIE-PFDPDQVRPNATGYDLRLGNEFRVFT-----NVNSTVIDP 55

Query: 63  IKHFKLREIDLSG-GTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARV-IG 120
                   +D+ G   +L      +   +E   L + +      +SS+ R+ +   V   
Sbjct: 56  KNFDPDSFVDIEGEVFILPPGEFALARTLEYFKLPDDVVGILEGRSSLARLGLIVHVTAI 115

Query: 121 DRSQEFDSISPNYSGPLYLEIL-PRTFPIVVRVGSRLSQIRFVK 163
           D         P + G + LE       P+ +  G  + Q+ F +
Sbjct: 116 D---------PGWEGHITLEFSNSGPLPVKLYPGEGIGQLLFFE 150


>gnl|CDD|107053 PHA01707, dut, 2'-deoxyuridine 5'-triphosphatase.
          Length = 158

 Score = 34.5 bits (79), Expect = 0.043
 Identities = 32/164 (19%), Positives = 69/164 (42%), Gaps = 37/164 (22%)

Query: 5   VLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIK 64
           +L D+ I     +G +V E PL ++ I+   +DL++ ++  R++     N++  V D+  
Sbjct: 2   ILSDRDIKYYINKGWLVIE-PLSEDTIRENGVDLKIGNEIVRIKE----NMEKEVGDEF- 55

Query: 65  HFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQ 124
                        ++  +   ++   E + L N I A+ N +S+  R  +          
Sbjct: 56  -------------IIYPHEHVLLTTKEYIKLPNDIIAFCNLRSTFARKGLL--------- 93

Query: 125 EFDSISPN-----YSGPLYLEILPRTFPIVVRVGSRLSQIRFVK 163
               I P      + G L +E++  + P+ ++ G R   + F +
Sbjct: 94  ----IPPTIVDAGFEGQLTIELVGSSIPVKLKSGERFLHLIFAR 133


>gnl|CDD|179395 PRK02253, PRK02253, deoxyuridine 5'-triphosphate
           nucleotidohydrolase; Provisional.
          Length = 167

 Score = 34.2 bits (79), Expect = 0.059
 Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 9/101 (8%)

Query: 14  LAERGDIVSEH--PLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIKHFKLREI 71
           L   G  V+EH   LE +Q+QP  +DL L     +     +   +  + ++        +
Sbjct: 11  LIRSGKFVAEHVVDLEDDQVQPNGVDLTLGEVEEQEGPGRIDFDNRKLPER------EPL 64

Query: 72  DL-SGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGR 111
           +    G +     +Y V   E +N+      +A P+SS+ R
Sbjct: 65  EFDDDGWIRLEPGIYKVRYNEVVNIPEDHVGFAYPRSSLLR 105


>gnl|CDD|148467 pfam06868, DUF1257, Protein of unknown function (DUF1257).  This
           family contains hypothetical proteins of unknown
           function that are approximately 120 residues long.
           Family members include eukaryotic and bacterial
           proteins.
          Length = 104

 Score = 29.9 bits (68), Expect = 1.1
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 205 EIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPLFSWDAPEGQFILD 253
           + G++ + GYR +   A I +   N YD        F W+  E + + D
Sbjct: 11  KEGEQPVRGYRGQTTRADIVIPQNNGYDIG------FRWNGDEYELVAD 53


>gnl|CDD|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional.
          Length = 699

 Score = 28.1 bits (62), Expect = 4.1
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 35  SIDLRLSSKAYRVRASFLPNIDGLVSDKIKHFKLREIDLSGGTVLDANCVYIVPLMESLN 94
           SID +LS   Y +      ++ GLVS K K  K  E D S    LD N + IV  +E  +
Sbjct: 93  SIDEKLSDLPYLIARKIRDSLAGLVSAKFKAEKQEEKDFS-RLALDCNEIKIVLHIEMPS 151

Query: 95  LKN 97
           +++
Sbjct: 152 IRS 154


>gnl|CDD|149728 pfam08758, Cadherin_pro, Cadherin prodomain like.  Cadherins are a
           family of proteins that mediate calcium dependent
           cell-cell adhesion. They are activated through cleavage
           of a prosequence in the late Golgi. This domain
           corresponds to the folded region of the prosequence, and
           is termed the prodomain. The prodomain shows structural
           resemblance to the cadherin domain, but lacks all the
           features known to be important for cadherin-cadherin
           interactions.
          Length = 90

 Score = 27.2 bits (61), Expect = 7.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 317 SVPFVLEHGQIIGRLKYESMDGEPERLY 344
            VP  LE GQ +GR+K+    G     Y
Sbjct: 14  LVPRRLEEGQPLGRVKFNDCKGRRRIQY 41


>gnl|CDD|149347 pfam08234, Spindle_Spc25, Chromosome segregation protein Spc25.
          This is a family of chromosome segregation proteins. It
          contains Spc25, which is a conserved eukaryotic
          kinetochore protein involved in cell division. In fungi
          the Spc25 protein is a subunit of the Nuf2-Ndc80
          complex, and in vertebrates it forms part of the Ndc80
          complex.
          Length = 74

 Score = 27.1 bits (61), Expect = 7.5
 Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 27 EKNQIQPASIDLRLSSKAYRVRASF--LPNIDGLVSD 61
           K+  +  S  L LS   Y V      L +++ LV +
Sbjct: 18 PKDPDREFSFTLDLSEDTYEVIDCDPKLEDLEELVEE 54


>gnl|CDD|162461 TIGR01646, vgr_GE, Rhs element Vgr protein.  This model represents
           the Vgr family of proteins, associated with some classes
           of Rhs elements. This model does not include a large
           octapeptide repeat region, VGXXXXXX, found in the Vgr of
           Rhs classes G and E.
          Length = 483

 Score = 26.7 bits (59), Expect = 9.5
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 323 EHGQIIGRLKYESMDGEPERLYGEARGSHYQS-QALKLSKHFHQTQ 367
           +HG++  RL+ E++     ++ GE   +     Q   LS H    Q
Sbjct: 252 QHGELYARLRLEALQSRAAKIQGEGNAAGLAPGQLFVLSGHPRNDQ 297


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0727    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,196,146
Number of extensions: 412805
Number of successful extensions: 635
Number of sequences better than 10.0: 1
Number of HSP's gapped: 620
Number of HSP's successfully gapped: 15
Length of query: 367
Length of database: 5,994,473
Length adjustment: 95
Effective length of query: 272
Effective length of database: 3,941,713
Effective search space: 1072145936
Effective search space used: 1072145936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)