RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780480|ref|YP_003064893.1| 2'-deoxycytidine
5'-triphosphate deaminase [Candidatus Liberibacter asiaticus str.
psy62]
(367 letters)
>2r9q_A AGR_C_764P, 2'-deoxycytidine 5'-triphosphate deaminase;
structural genomics, MCSG, PSI-2, protein structure
initiative; 2.20A {Agrobacterium tumefaciens str}
(A:1-174)
Length = 174
Score = 125 bits (316), Expect = 7e-30
Identities = 99/160 (61%), Positives = 115/160 (71%)
Query: 4 GVLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKI 63
G+L D AI L + SE L+ +Q+QPAS+DLRL SKAYRVRASF+P V DK+
Sbjct: 11 GILADGAIRALFAGDKLKSEADLDVDQVQPASLDLRLGSKAYRVRASFMPGPGTRVIDKL 70
Query: 64 KHFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRS 123
F L E+DLS G VL+ CVYIVPLMESL L +SA ANPKSS GR+D+F RV+ D +
Sbjct: 71 NRFSLHEVDLSQGAVLETGCVYIVPLMESLALPADMSASANPKSSTGRLDIFTRVMTDNA 130
Query: 124 QEFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVK 163
QEFD I Y+GPLYLEI PRTFPIVVR GSRLSQIRF
Sbjct: 131 QEFDKIPAGYTGPLYLEISPRTFPIVVRRGSRLSQIRFRI 170
Score = 43.8 bits (103), Expect = 4e-05
Identities = 18/142 (12%), Positives = 44/142 (30%), Gaps = 13/142 (9%)
Query: 198 SVDLK-GNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPLFSWDAPEGQFILDPNE 256
S+DL+ G++ + ++ + ++ D +G +L+
Sbjct: 42 SLDLRLGSKAYRVRASFMPGPGTRVIDKLNRFSLHE----------VDLSQG-AVLETGC 90
Query: 257 FYIFASREFIQIPPSLVAEMIPYDH-SIGEFRVHYAGFFDPGFGCVLPQEVGAKAVLEVR 315
YI E + +P + A P + F + G +
Sbjct: 91 VYIVPLMESLALPADMSASANPKSSTGRLDIFTRVMTDNAQEFDKIPAGYTGPLYLEISP 150
Query: 316 SSVPFVLEHGQIIGRLKYESMD 337
+ P V+ G + ++++
Sbjct: 151 RTFPIVVRRGSRLSQIRFRIGH 172
>2r9q_A AGR_C_764P, 2'-deoxycytidine 5'-triphosphate deaminase;
structural genomics, MCSG, PSI-2, protein structure
initiative; 2.20A {Agrobacterium tumefaciens str}
(A:175-370)
Length = 196
Score = 115 bits (288), Expect = 1e-26
Identities = 107/197 (54%), Positives = 132/197 (67%), Gaps = 7/197 (3%)
Query: 169 SQEELSALHELSPLVQDGLRDFSGKGVALSVDLK-GNEIGKKSIIGYRAKRHTAAIDVDS 227
++ E+ LHE LV + +G G+ALS+DLK E G +IGYR K HTA +DVD
Sbjct: 2 NESEVLKLHETETLVASENPNVTGGGIALSIDLKGFGENG---LIGYRGKHHTAVVDVDK 58
Query: 228 ENKYDESDFWDPLFSWDAPEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFR 287
+ ++D DFW+PLF ILDP+EFYI SRE + +PP AEM P+D +GEFR
Sbjct: 59 KAQHDVLDFWEPLF-ARGRAE-LILDPDEFYILVSREAVHVPPLYAAEMTPFDPLVGEFR 116
Query: 288 VHYAGFFDPGFGCVLPQEVGAKAVLEVR-SSVPFVLEHGQIIGRLKYESMDGEPERLYGE 346
VHYAGFFDPGFG G++AVLEVR VPF+LEHGQI+GRL YE M +PE LYG
Sbjct: 117 VHYAGFFDPGFGHAQAGGTGSRAVLEVRSHEVPFILEHGQIVGRLVYEHMLEKPEGLYGT 176
Query: 347 ARGSHYQSQALKLSKHF 363
GS+YQ+Q LKLSKHF
Sbjct: 177 GLGSNYQAQGLKLSKHF 193
Score = 95.9 bits (238), Expect = 8e-21
Identities = 22/165 (13%), Positives = 52/165 (31%), Gaps = 7/165 (4%)
Query: 6 LPDKAIATLAERGDIVSE-HPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIK 64
L + + L E +V+ +P SIDL+ + + + + DK
Sbjct: 1 LNESEVLKLHETETLVASENPNVTGGGIALSIDLKGFGENGLIGYRGKHHTAVVDVDKKA 60
Query: 65 HFKLRE------IDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARV 118
+ + +LD + YI+ E++++ +A P +
Sbjct: 61 QHDVLDFWEPLFARGRAELILDPDEFYILVSREAVHVPPLYAAEMTPFDPLVGEFRVHYA 120
Query: 119 IGDRSQEFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVK 163
+ + LE+ P ++ G + ++ +
Sbjct: 121 GFFDPGFGHAQAGGTGSRAVLEVRSHEVPFILEHGQIVGRLVYEH 165
>1pkh_A Bifunctional deaminase/diphosphatase; DCTP deaminase,
dutpase, DCD-DUT, MJ0430, DCTP, DUTP, hydrolase; 1.42A
{Methanocaldococcus jannaschii} (A:)
Length = 204
Score = 103 bits (258), Expect = 4e-23
Identities = 34/174 (19%), Positives = 58/174 (33%), Gaps = 22/174 (12%)
Query: 5 VLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIK 64
+L DK I I+ + P K+ + P S D+ L + L +IK
Sbjct: 2 ILSDKDIIDYVTSKRIIIK-PFNKDFVGPCSYDVTLGDEFIIYDDEVYDLSKELNYKRIK 60
Query: 65 HFKLREIDL---------------SGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSI 109
+ + E + L N ISA +SS+
Sbjct: 61 IKNSILVCPLNYNLTEEKINYFKEKYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSSL 120
Query: 110 GRIDVFARVIGDRSQEFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVK 163
GR+ + + I + G + LEI+ P+++ R+ Q+ F K
Sbjct: 121 GRVFLTSHQTAGW------IDAGFKGKITLEIVAFDKPVILYKNQRIGQLIFSK 168
Score = 75.4 bits (185), Expect = 1e-14
Identities = 25/203 (12%), Positives = 60/203 (29%), Gaps = 17/203 (8%)
Query: 169 SQEELSALHELSPLVQDGLRD--FSGKGVALSVDLKGNEIGKKSIIGYRAKRHTAAIDVD 226
S +++ ++ +++ + I + + + I +
Sbjct: 4 SDKDIIDYVTSKRIIIKPFNKDFVGPCSYDVTLGDEF-IIYDDEVYDLSKELNYKRIKIK 62
Query: 227 SENKYDESDFWDPLFSW---DAPEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYD--H 281
+ ++ + + E+I++P + A+
Sbjct: 63 NSILVCPLNYNLTEEKINYFKEKYN-VDYVVEGGVLGTTNEYIELPNDISAQYQGRSSLG 121
Query: 282 SIGEFRVHYAGFFDPGFGCVLPQEVGAKAVLEVRSSVPFVLEHGQIIGRLKYESMDGEPE 341
+ AG+ D GF G + V P +L Q IG+L + + +
Sbjct: 122 RVFLTSHQTAGWIDAGFK-------GKITLEIVAFDKPVILYKNQRIGQLIFSKLLSPAD 174
Query: 342 RLYGEARGSHYQ-SQALKLSKHF 363
Y E + S Y +++ S
Sbjct: 175 VGYSERKTSKYAYQKSVMPSLIH 197
>3km3_A DCTP deaminase, deoxycytidine triphosphate deaminase;
ssgcid, NIH, niaid, SBRI, UW, decode, iodide phasing,
hydrolase; 2.10A {Anaplasma phagocytophilum HZ} (A:)
Length = 206
Score = 98.5 bits (245), Expect = 1e-21
Identities = 28/213 (13%), Positives = 62/213 (29%), Gaps = 18/213 (8%)
Query: 151 RVGSRLSQIRFVKERKFCSQEELSALHELSPLVQDGLRDFSGKGV-ALSVDLKGNEIGKK 209
+G+ +Q + + ++ + G GV + + G +
Sbjct: 8 HMGTLEAQTQGPGSMSVMPDHWIKERALKDGMISPFVDHKEGTGVLSYGLSSYGYDARLD 67
Query: 210 SIIGYRAKRHTAAIDVDSENKYDESDFWDPLFSWDAPEGQFILDPNEFYIFASREFIQIP 269
+ A H+ +D + ++ D I+ PN F + + E+ IP
Sbjct: 68 NKFKIFANTHSVVVDPKNFSQDSFVDREG---------DFCIIPPNSFMLAKTVEYFNIP 118
Query: 270 PSLVAEMIPYDHSIGEFRVHYAGFFDPGFGCVLPQEVGAKAVLEVRSSVPFVLEHGQIIG 329
++ + V +PG+ + S +P + +
Sbjct: 119 RDVMVVCVGKSTYARCGIVVNVTPLEPGWSGYV------TLEFSNTSPLPVKVYAFEGAC 172
Query: 330 RLKYESMDGEPERLYGEARGSHYQ-SQALKLSK 361
+ + S + Y E G Y + L
Sbjct: 173 QFLFFSGKERCSKSYDE-AGGKYMGQSDVTLPI 204
Score = 71.6 bits (175), Expect = 1e-13
Identities = 29/169 (17%), Positives = 51/169 (30%), Gaps = 24/169 (14%)
Query: 5 VLPDKAIATLAERGDIVSE-------HPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDG 57
V+PD I A + ++S + + D RL +K + +D
Sbjct: 24 VMPDHWIKERALKDGMISPFVDHKEGTGVLSYGLSSYGYDARLDNKFKIFANTHSVVVD- 82
Query: 58 LVSDKIKHFKLREIDL--SGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVF 115
K+F ++ N + +E N+ + KS+ R +
Sbjct: 83 -----PKNFSQDSFVDREGDFCIIPPNSFMLAKTVEYFNIPRDVMVVCVGKSTYARCGIV 137
Query: 116 ARVIGDRSQEFDSISPNYSGPLYLEIL-PRTFPIVVRVGSRLSQIRFVK 163
V + P +SG + LE P+ V Q F
Sbjct: 138 VNV--------TPLEPGWSGYVTLEFSNTSPLPVKVYAFEGACQFLFFS 178
>1xs1_A DCTP deaminase, deoxycytidine triphosphate deaminase;
nucleotide metabolism, trimer, hydrolase; HET: DUT;
1.80A {Escherichia coli} (A:)
Length = 193
Score = 96.2 bits (239), Expect = 6e-21
Identities = 35/167 (20%), Positives = 60/167 (35%), Gaps = 14/167 (8%)
Query: 5 VLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKI- 63
L D+ I + G + +I A++D+RL +K R ID
Sbjct: 2 RLCDRDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTFRGHTAAFIDLSGPKDEV 61
Query: 64 ----KHFKLREIDLS--GGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFAR 117
EI L L + + +ES+ L + + + +SS+ R+ +
Sbjct: 62 SAALDRVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGLMVH 121
Query: 118 VIGDRSQEFDSISPNYSGPLYLEIL-PRTFPIVVRVGSRLSQIRFVK 163
V R I P +SG + LE P+ +R G + + F
Sbjct: 122 VTAHR------IDPGWSGCIVLEFYNSGKLPLALRPGMLIGALSFEP 162
Score = 80.0 bits (197), Expect = 4e-16
Identities = 37/199 (18%), Positives = 61/199 (30%), Gaps = 15/199 (7%)
Query: 169 SQEELSALHELSPLVQDGLRDFSGKGVALSVDLK-GNEIGKKSIIGYRAKRHTAAIDVDS 227
++ A + L + A +VD++ GN+ + D S
Sbjct: 4 CDRDIEAWLDEGRLSINPRPPVERINGA-TVDVRLGNKFRTFRGHTAAFIDLSGPKDEVS 62
Query: 228 ENKYDESDFWDPLFSWDAPEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDH--SIGE 285
L E F L P E + + E + +P LV + +G
Sbjct: 63 AALDRVMSDEIVLD---EGEA-FYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGL 118
Query: 286 FRVHYAGFFDPGFGCVLPQEVGAKAVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYG 345
A DPG+ + +P L G +IG L +E + G R Y
Sbjct: 119 MVHVTAHRIDPGWSGCI------VLEFYNSGKLPLALRPGMLIGALSFEPLSGPAVRPYN 172
Query: 346 EARGSHYQ-SQALKLSKHF 363
+ Y+ Q S+
Sbjct: 173 RREDAKYRNQQGAVASRID 191
>2qxx_A DCTP deaminase, deoxycytidine triphosphate deaminase;
distorted beta barrel, hydrolase, nucleotide metabolism;
HET: TTP 1PE; 2.00A {Mycobacterium tuberculosis H37RV}
PDB: 2qlp_A* (A:)
Length = 190
Score = 92.7 bits (230), Expect = 6e-20
Identities = 33/160 (20%), Positives = 64/160 (40%), Gaps = 9/160 (5%)
Query: 5 VLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIK 64
+L D+ + G + + P + +QP+SID+RL +RV + + +
Sbjct: 2 LLSDRDLRAEISSGRLGID-PFDDTLVQPSSIDVRLDCL-FRVFNNTRYTHIDPAKQQDE 59
Query: 65 HFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQ 124
L + VL + +E L + ++ KSS+GR+ +
Sbjct: 60 LTSLVQPVDGEPFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLGLLTHSTAGF-- 117
Query: 125 EFDSISPNYSGPLYLEILPRT-FPIVVRVGSRLSQIRFVK 163
I P +SG + LE+ PI + G ++ Q+ ++
Sbjct: 118 ----IDPGFSGHITLELSNVANLPITLWPGMKIGQLCMLR 153
Score = 65.4 bits (159), Expect = 1e-11
Identities = 45/201 (22%), Positives = 70/201 (34%), Gaps = 27/201 (13%)
Query: 169 SQEELSALHELSPLVQDGLRDFSGKGVAL-SVDLK-GNEIGKKSIIGYRAKRHTAAIDVD 226
S +L A L D F V S+D++ +R +T +D
Sbjct: 4 SDRDLRAEISSGRLGID---PFDDTLVQPSSIDVRLDCL--------FRVFNNTRYTHID 52
Query: 227 SENKYDESDFWDPLFSWDAPEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSI--G 284
+ DE + F+L P EF + ++ E +P +L + G
Sbjct: 53 PAKQQDELTSLVQPVDGE----PFVLHPGEFVLGSTLELFTLPDNLAGRLEGKSSLGRLG 108
Query: 285 EFRVHYAGFFDPGFGCVLPQEVGAKAVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLY 344
AGF DPGF + L +++P L G IG+L + E Y
Sbjct: 109 LLTHSTAGFIDPGFS----GHI--TLELSNVANLPITLWPGMKIGQLCMLRLTSPSEHPY 162
Query: 345 GE-ARGSHYQ-SQALKLSKHF 363
G GS YQ + S+ +
Sbjct: 163 GSSRAGSKYQGQRGPTPSRSY 183
>2yzj_A 167AA long hypothetical dutpase; all beta proteins,
hypothetical protein, NPPSFA; HET: DUD; 1.66A
{Sulfolobus tokodaii} PDB: 2zdc_A (A:)
Length = 169
Score = 81.9 bits (202), Expect = 1e-16
Identities = 28/159 (17%), Positives = 50/159 (31%), Gaps = 20/159 (12%)
Query: 5 VLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIK 64
+L ++I L + + ++ DLR+ + K
Sbjct: 12 ILSHQSIKNLLGKV----ILNYSEENVRENGYDLRICGD-KYYELVQGAELPE------K 60
Query: 65 HFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQ 124
LREI+ +L AN Y+ E N ++ KS++ R A
Sbjct: 61 KATLREIEFKERAILSANHTYLFESCEEFNXPADLAVLITLKSTLARNGFLAPP------ 114
Query: 125 EFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVK 163
I Y G + + I ++ G + F+K
Sbjct: 115 --TVIDAGYKGKVNVAITAVY-NSSLKKGXATHHLIFLK 150
Score = 49.5 bits (118), Expect = 6e-07
Identities = 20/102 (19%), Positives = 31/102 (30%), Gaps = 9/102 (8%)
Query: 245 APEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGCVLPQ 304
E IL N Y+F S E P L + + D G+ +
Sbjct: 69 FKER-AILSANHTYLFESCEEFNXPADLAVLITLKSTLARNGFLAPPTVIDAGYKGKV-- 125
Query: 305 EVGAKAVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGE 346
+ + + L+ G L + +D ERLY
Sbjct: 126 ------NVAITAVYNSSLKKGXATHHLIFLKLDKPTERLYNG 161
>1vyq_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; drug
design, dutpase, deoxyuridine nucleotidohydrolase,
malaria; HET: DUX; 2.4A {Plasmodium falciparum} (A:)
Length = 173
Score = 81.6 bits (201), Expect = 1e-16
Identities = 15/159 (9%), Positives = 36/159 (22%), Gaps = 19/159 (11%)
Query: 6 LPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIKH 65
L ++ + + + +DL + + K
Sbjct: 3 LKIVCLSDEVREMYK----NHKTHHEGDSGLDLFIVKD-------EVLKPKSTTFVK-LG 50
Query: 66 FKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQE 125
K + + + S P+SSI + +
Sbjct: 51 IKAIALQYKSNYYYKCEKSENKKKDDDKSNIVNTSFLLFPRSSISKTPLRLANSIGL--- 107
Query: 126 FDSISPNYSGPLYLEILPRTF-PIVVRVGSRLSQIRFVK 163
I Y G + + + ++ +L Q+
Sbjct: 108 ---IDAGYRGEIIAALDNTSDQEYHIKKNDKLVQLVSFT 143
Score = 41.5 bits (97), Expect = 2e-04
Identities = 13/117 (11%), Positives = 31/117 (26%), Gaps = 14/117 (11%)
Query: 246 PEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDH--SIGEFRVHYAGFFDPGF-GCVL 302
+ + + + + + P + G D G+ G +
Sbjct: 58 YKSNYYYKCEKSENKKKDDDKSNIVNTSFLLFPRSSISKTPLRLANSIGLIDAGYRGEI- 116
Query: 303 PQEVGAKAVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGE----ARGSHYQSQ 355
A L+ S + ++ + +L + + L E +RG
Sbjct: 117 ------IAALDNTSDQEYHIKKNDKLVQLVSFTGEPLSFELVEELDETSRGEGGFGS 167
>2p9o_A DUTP pyrophosphatase-like protein; dutpase, magnesium
binding, hydrolase; 2.00A {Arabidopsis thaliana} PDB:
2pc5_A (A:)
Length = 169
Score = 78.5 bits (193), Expect = 1e-15
Identities = 26/162 (16%), Positives = 51/162 (31%), Gaps = 20/162 (12%)
Query: 28 KNQIQPASIDLRLSSKAYRVRASFLPNID------GLVSDKIKHFKLREIDLSG--GTVL 79
+P+ +L +S P V DLS + +
Sbjct: 5 ACVNEPSPKLQKLDRNGIHGDSSPSPFFKVKKLSEKAVIPTRGSPLSAGYDLSSAVDSKV 64
Query: 80 DANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGPLYL 139
A ++P S+ + G A P+S + G I +Y GP+ +
Sbjct: 65 PARGKALIPTDLSIAVPEGTYARIAPRSGLAWKHSIDVGAGV-------IDADYRGPVGV 117
Query: 140 EILPRTF-PIVVRVGSRLSQIRFVKERKFCSQEELSALHELS 180
+ + V+ G R++Q+ K ++ + +L
Sbjct: 118 ILFNHSDADFEVKFGDRIAQLIIEK----IVTPDVVEVDDLD 155
Score = 38.0 bits (88), Expect = 0.002
Identities = 18/115 (15%), Positives = 32/115 (27%), Gaps = 14/115 (12%)
Query: 245 APEGQFILDPNEFYIFASREFIQIPPSLVAEMIP-YDHSIGEFRVHYAGFFDPGF-GCVL 302
+ + + + I +P A + P + AG D + G V
Sbjct: 58 SAVD-SKVPARGKALIPTDLSIAVPEGTYARIAPRSGLAWKHSIDVGAGVIDADYRGPV- 115
Query: 303 PQEVGAKAVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGE----ARGSHYQ 353
+L S F ++ G I +L E + + RG
Sbjct: 116 ------GVILFNHSDADFEVKFGDRIAQLIIEKIVTPDVVEVDDLDETVRGDGGF 164
>3hza_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; jelly
roll, domain swapping, nucleotide metabolism; HET: DUP;
1.20A {Mycobacterium tuberculosis} PDB: 1six_A* 1slh_A*
1sm8_A* 1smc_A* 1snf_A* 2py4_A* 3h6d_A* 3i93_A* 1mq7_A
1sjn_A* (A:)
Length = 174
Score = 76.1 bits (187), Expect = 6e-15
Identities = 19/150 (12%), Positives = 46/150 (30%), Gaps = 15/150 (10%)
Query: 16 ERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIKHFKLREIDLSG 75
+ + + L+ LP+ + ++ +
Sbjct: 2 GSSHHHHH-HSSGLVPRGSHMSTTLAIV-RLDPGLPLPSRAHDGDAGV------DLYSAE 53
Query: 76 GTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSG 135
L +V ++ + G+ +P+S + + V +I Y G
Sbjct: 54 DVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVN-----SPGTIDAGYRG 108
Query: 136 PLYLEILPRT--FPIVVRVGSRLSQIRFVK 163
+ + ++ PIVV G R++Q+ +
Sbjct: 109 EIKVALINLDPAAPIVVHRGDRIAQLLVQR 138
Score = 38.8 bits (90), Expect = 0.001
Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 12/116 (10%)
Query: 245 APEGQFILDPNEFYIFASREFIQIPPSLVAEMIP---YDHSIGEFRVHYAGFFDPGF-GC 300
+ E L P + + + +P +V + P +G V+ G D G+ G
Sbjct: 51 SAED-VELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGE 109
Query: 301 VLPQEVGAKAVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGE-ARGSHYQSQ 355
+ ++ + + P V+ G I +L + ++ +
Sbjct: 110 IKVA------LINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLASTS 159
>3ehw_A DUTP pyrophosphatase; jelly-roll, FULL-length C-terminal
ARM, enzyme-ligand complex, hydrolase; HET: DUP; 1.80A
{Homo sapiens} (A:)
Length = 164
Score = 74.9 bits (184), Expect = 1e-14
Identities = 18/157 (11%), Positives = 43/157 (27%), Gaps = 18/157 (11%)
Query: 25 PLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIKHFKLREIDLSGGTVLDANCV 84
+ +PA + A + P + ++ + +
Sbjct: 10 ISPSKRARPAEVGGMQLRFARLSEHATAPTRGSARAAGY------DLYSAYDYTIPPMEK 63
Query: 85 YIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGPLYLEILPR 144
+V + L +G P+S + I +Y G + + +
Sbjct: 64 AVVKTDIQIALPSGCYGRVAPRSGLAA-------KHFIDVGAGVIDEDYRGNVGVVLFNF 116
Query: 145 TF-PIVVRVGSRLSQIRFVKERKFCSQEELSALHELS 180
V+ G R++Q+ + E+ + L
Sbjct: 117 GKEKFEVKKGDRIAQLICER----IFYPEIEEVQALD 149
Score = 41.8 bits (98), Expect = 1e-04
Identities = 23/166 (13%), Positives = 42/166 (25%), Gaps = 33/166 (19%)
Query: 198 SVDL-KGNE--IGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPLFSWDAPEGQFILDP 254
V + + + + R A D+ + + + P
Sbjct: 20 EVGGMQLRFARLSEHATAPTRGSARAAGYDLY------------------SAYD-YTIPP 60
Query: 255 NEFYIFASREFIQIPPSLVAEMIP-YDHSIGEFRVHYAGFFDPGFGCVLPQEVGAKAVLE 313
E + + I +P + P + F AG D + + VL
Sbjct: 61 MEKAVVKTDIQIALPSGCYGRVAPRSGLAAKHFIDVGAGVIDEDYRGNV------GVVLF 114
Query: 314 VRSSVPFVLEHGQIIGRLKYESMDGEPERLYGE----ARGSHYQSQ 355
F ++ G I +L E + RGS
Sbjct: 115 NFGKEKFEVKKGDRIAQLICERIFYPEIEEVQALDDTERGSGGFGS 160
>2d4n_A DU; jelly roll, hydrolase; HET: UPR; 1.53A {Mason-pfizer
monkey virus} PDB: 2d4m_A 2d4l_A* (A:)
Length = 152
Score = 74.9 bits (184), Expect = 2e-14
Identities = 13/162 (8%), Positives = 39/162 (24%), Gaps = 18/162 (11%)
Query: 194 GVALSVDLKGNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPLFSWDAPEGQFILD 253
G A + +++ + + L + +
Sbjct: 5 GPAPGPETS-----LWGSQLCSSQQKQPISKLT---RATPGSAGLDLC---STSHTVLTP 53
Query: 254 PNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGCVLPQEVGAKAVLE 313
++ + +PP+ ++ + Y G D + + ++
Sbjct: 54 EMGPQALSTGIYGPLPPNTFGLILGRSSITMKGLQVYPGVIDNDYTGEIK-------IMA 106
Query: 314 VRSSVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQ 355
+ + G I +L + ++ RG
Sbjct: 107 KAVNNIVTVSQGNRIAQLILLPLIETDNKVQQPYRGQGSFGS 148
Score = 64.2 bits (156), Expect = 3e-11
Identities = 17/140 (12%), Positives = 34/140 (24%), Gaps = 16/140 (11%)
Query: 28 KNQIQPA-SIDLRLSSKAYRVRASFLPNIDGLVSDKIKHFKLREIDLS---GGTVLDANC 83
K PA + L + +DL +
Sbjct: 1 KRVEGPAPGPETSLWGSQLC----SSQQKQPISKLTRATPGSAGLDLCSTSHTVLTPEMG 56
Query: 84 VYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGPLYLEILP 143
+ L +SSI + I +Y+G + +
Sbjct: 57 PQALSTGIYGPLPPNTFGLILGRSSITMKGLQVYP--------GVIDNDYTGEIKIMAKA 108
Query: 144 RTFPIVVRVGSRLSQIRFVK 163
+ V G+R++Q+ +
Sbjct: 109 VNNIVTVSQGNRIAQLILLP 128
>3ecy_A CG4584-PA, isoform A (bcDNA.LD08534); jelly-roll, dimeric
assembly, hydrolase; 1.88A {Drosophila melanogaster}
(A:)
Length = 160
Score = 73.8 bits (181), Expect = 3e-14
Identities = 22/162 (13%), Positives = 50/162 (30%), Gaps = 18/162 (11%)
Query: 20 IVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIKHFKLREIDLSGGTVL 79
+ S + + ID + A + P + + ++ + V+
Sbjct: 1 MPSTDFADIPAAKKMKIDTCVLRFAKLTENALEPVRGSAKAAGV------DLRSAYDVVV 54
Query: 80 DANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGPLYL 139
A IV + + G P+S + + G + +Y G L +
Sbjct: 55 PARGKAIVKTDLQVQVPEGSYGRVAPRSGLAVKNFIDVGAGV-------VDEDYRGNLGV 107
Query: 140 EILPRTF-PIVVRVGSRLSQIRFVKERKFCSQEELSALHELS 180
+ + V+ G R++Q + +L + +L
Sbjct: 108 VLFNHSDVDFEVKHGDRIAQFICER----IFYPQLVMVDKLE 145
Score = 36.8 bits (85), Expect = 0.005
Identities = 24/165 (14%), Positives = 48/165 (29%), Gaps = 35/165 (21%)
Query: 198 SVDLK-GNE--IGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPLFSWDAPEGQFILDP 254
+D + + ++ R A +D+ + ++
Sbjct: 16 KIDTCVLRFAKLTENALEPVRGSAKAAGVDLR------------------SAYD-VVVPA 56
Query: 255 NEFYIFASREFIQIPPSLVAEMIP-YDHSIGEFRVHYAGFFDPGF-GCVLPQEVGAKAVL 312
I + +Q+P + P ++ F AG D + G + VL
Sbjct: 57 RGKAIVKTDLQVQVPEGSYGRVAPRSGLAVKNFIDVGAGVVDEDYRGNL-------GVVL 109
Query: 313 EVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGE----ARGSHYQ 353
S V F ++HG I + E + + + RG
Sbjct: 110 FNHSDVDFEVKHGDRIAQFICERIFYPQLVMVDKLEDTERGEAGF 154
>3f4f_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; trimer,
beta barrel, UMP, product complex, DUTP pyrophosphatase,
DITP; HET: UMP; 2.00A {Saccharomyces cerevisiae} PDB:
3hhq_A (A:)
Length = 167
Score = 59.6 bits (144), Expect = 6e-10
Identities = 14/163 (8%), Positives = 42/163 (25%), Gaps = 17/163 (10%)
Query: 198 SVDLKGNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPLFS--WD--APEGQFILD 253
+ + + + + + +D A + +
Sbjct: 9 HHSSG---LVPRGSHM--TATSDKVLKIQLRSASATVPTKGSATAAGYDIYASQD-ITIP 62
Query: 254 PNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHY-AGFFDPGFGCVLPQEVGAKAVL 312
+ ++ +P + P + + AG D + EV
Sbjct: 63 AMGQGMVSTDISFTVPVGTYGRIAPRSGLAVKNGIQTGAGVVDRDYT----GEVKVVLF- 117
Query: 313 EVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQ 355
S F ++ G + +L E + + + + ++ +
Sbjct: 118 -NHSQRDFAIKKGDRVAQLILEKIVDDAQIVVVDSLEESARGA 159
Score = 59.2 bits (143), Expect = 8e-10
Identities = 18/158 (11%), Positives = 45/158 (28%), Gaps = 16/158 (10%)
Query: 30 QIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIKHFKLREIDLSGG--------TVLDA 81
L + + A+ + + + + G + A
Sbjct: 4 SHHHHHHSSGLVPRGSHMTATSDKVLKIQLRSASATVPTKGSATAAGYDIYASQDITIPA 63
Query: 82 NCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGPLYLEI 141
+V S + G P+S + + G + +Y+G + + +
Sbjct: 64 MGQGMVSTDISFTVPVGTYGRIAPRSGLAVKNGIQTGAG-------VVDRDYTGEVKVVL 116
Query: 142 LPRTF-PIVVRVGSRLSQIRFVKERKFCSQEELSALHE 178
+ ++ G R++Q+ K + +L E
Sbjct: 117 FNHSQRDFAIKKGDRVAQLILEKIVDDAQIVVVDSLEE 154
>1f7d_A POL polyprotein; eight stranded beta-barrel, viral protein,
hydrolase; 1.40A {Feline immunodeficiency virus} (A:)
Length = 136
Score = 57.2 bits (138), Expect = 3e-09
Identities = 17/115 (14%), Positives = 29/115 (25%), Gaps = 11/115 (9%)
Query: 245 APEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGCVLPQ 304
A + L P E + + + +P +I + G D G+
Sbjct: 22 AAKE-IHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKGLDVLGGVIDEGY------ 74
Query: 305 EVGAKAVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGE----ARGSHYQSQ 355
++ S L Q I +L E RG +
Sbjct: 75 RGEIGVIMINVSRKSITLMERQKIAQLIILPCKHEVLEQGKVVMDSERGDNGYGS 129
Score = 38.3 bits (89), Expect = 0.001
Identities = 19/104 (18%), Positives = 34/104 (32%), Gaps = 13/104 (12%)
Query: 78 VLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGPL 137
L V ++P L L G KSSIG + I Y G +
Sbjct: 27 HLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSKGLDVLG--------GVIDEGYRGEI 78
Query: 138 YLEILPRT-FPIVVRVGSRLSQIRFVKERKFCSQEELSALHELS 180
+ ++ + I + +++Q+ + C E L +
Sbjct: 79 GVIMINVSRKSITLMERQKIAQLIILP----CKHEVLEQGKVVM 118
>3ca9_A Deoxyuridine triphosphatase; dutpase chlorella virus,
hydrolase; HET: DUD; 3.00A {Paramecium bursaria
chlorella VIRUSIL3A} (A:)
Length = 165
Score = 53.0 bits (127), Expect = 5e-08
Identities = 20/145 (13%), Positives = 43/145 (29%), Gaps = 19/145 (13%)
Query: 22 SEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIKHFKLREIDLSGG--TVL 79
+ + + + L K A P D+S V+
Sbjct: 2 ASMTGGQQMGRGSEFMSSLLVKKLVESA-TTP--------MRGSEGAAGYDISSVEDVVV 52
Query: 80 DANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGPLYL 139
A V S+ + +G P+S + I +Y+G + +
Sbjct: 53 PAMGRIAVSTGISIRVPDGTYGRIAPRSGLAY-------KYGIDVLAGVIDEDYTGEVKV 105
Query: 140 EILPRTF-PIVVRVGSRLSQIRFVK 163
+ T +++ G R++Q+ +
Sbjct: 106 ILYNTTERDYIIKKGDRIAQLILEQ 130
Score = 36.8 bits (85), Expect = 0.004
Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 12/121 (9%)
Query: 250 FILDPNEFYIFASREFIQIPPSLVAEMIP-YDHSIGEFRVHYAGFFDPGFGCVLPQEVGA 308
++ ++ I++P + P + AG D + +
Sbjct: 50 VVVPAMGRIAVSTGISIRVPDGTYGRIAPRSGLAYKYGIDVLAGVIDEDYTGEV------ 103
Query: 309 KAVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGE----ARGSHYQ-SQALKLSKHF 363
K +L + ++++ G I +L E + + + ARGS S + H
Sbjct: 104 KVILYNTTERDYIIKKGDRIAQLILEQIVTPGVAVVLDLSDTARGSGGFGSTGILEHHHH 163
Query: 364 H 364
H
Sbjct: 164 H 164
>1dun_A Deoxyuridine 5'-triphosphate nucleoditohydrolase; dutpase,
EIAV, trimeric enzyme, aspartyl protease; 1.90A {Equine
infectious anemia virus} (A:)
Length = 134
Score = 46.1 bits (109), Expect = 7e-06
Identities = 15/110 (13%), Positives = 32/110 (29%), Gaps = 10/110 (9%)
Query: 250 FILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGCVLPQEVGAK 309
++ ++ I + IQ+PP+ + + + G D G+ + +
Sbjct: 27 IMIPVSDTKIIPTDVKIQVPPNSFGWVTGKSSMAKQGLLINGGIIDEGYTGEI------Q 80
Query: 310 AVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGE----ARGSHYQSQ 355
+ L GQ +L + + E RG
Sbjct: 81 VICTNIGKSNIKLIEGQKFAQLIILQHHSNSRQPWDENKISQRGDKGFGS 130
Score = 36.0 bits (83), Expect = 0.008
Identities = 11/87 (12%), Positives = 30/87 (34%), Gaps = 9/87 (10%)
Query: 78 VLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGPL 137
++ + I+P + + + KSS+ + + I Y+G +
Sbjct: 28 MIPVSDTKIIPTDVKIQVPPNSFGWVTGKSSMAKQGLLING--------GIIDEGYTGEI 79
Query: 138 YLEIL-PRTFPIVVRVGSRLSQIRFVK 163
+ I + G + +Q+ ++
Sbjct: 80 QVICTNIGKSNIKLIEGQKFAQLIILQ 106
>2bsy_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; dutpase,
monomer, nucleotide metabolism, structural proteomics in
europe, spine; HET: UMP; 1.5A {Human herpesvirus 4}
(A:117-244)
Length = 128
Score = 43.3 bits (102), Expect = 5e-05
Identities = 13/111 (11%), Positives = 20/111 (18%), Gaps = 12/111 (10%)
Query: 245 APEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGF-GCVLP 303
P+ L P++ P + S G G V
Sbjct: 22 LPKD-LALFPHQTVSVTLTVPPPSIPHHRPTIFG--RS-GLAMQGILVKPCRWRRGGV-- 75
Query: 304 QEVGAKAVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQS 354
L S L + +L Y +
Sbjct: 76 -----DVSLTNFSDQTVFLNKYRRFCQLVYLHKHHLTSFYSPHSDAGVLGP 121
Score = 34.1 bits (78), Expect = 0.027
Identities = 7/87 (8%), Positives = 20/87 (22%), Gaps = 12/87 (13%)
Query: 78 VLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGPL 137
L + V L +S + + G +
Sbjct: 27 ALFPHQTVSVTLTVPPPSIPHHRPTIFGRSGLAMQGI-----------LVKPCRWRRGGV 75
Query: 138 YLEILPRTF-PIVVRVGSRLSQIRFVK 163
+ + + + + R Q+ ++
Sbjct: 76 DVSLTNFSDQTVFLNKYRRFCQLVYLH 102
>2baz_A YOSS, hypothetical protein BSU20020; homotrimer, beta
barrel, unknown function; 2.30A {Bacillus subtilis} (A:)
Length = 142
Score = 41.8 bits (98), Expect = 1e-04
Identities = 11/109 (10%), Positives = 34/109 (31%), Gaps = 8/109 (7%)
Query: 250 FILDPNEFYIFASREFIQIPPSLVAEMIPYDHSI---GEFRVHYAGFFDPGFGCVLPQEV 306
+ +EF + +++P A ++P + G + + G D + +
Sbjct: 32 VAIKKDEFKLVPLGVAMELPEGYEAHVVPRSSTYKNFGVIQTNSMGVIDESY----KGDN 87
Query: 307 GAKAVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQ 355
+ ++ G I + + + + + G+ +
Sbjct: 88 D-FWFFPAYALRDTKIKKGDRICQFRIMKKMPAVDLIEVDRLGNGDRGG 135
Score = 40.3 bits (94), Expect = 4e-04
Identities = 20/103 (19%), Positives = 36/103 (34%), Gaps = 7/103 (6%)
Query: 78 VLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGPL 137
+ + +VPL ++ L G A+ P+SS + + I +Y G
Sbjct: 33 AIKKDEFKLVPLGVAMELPEGYEAHVVPRSSTYKNFGVIQTNS-----MGVIDESYKGDN 87
Query: 138 YLEILPRTF--PIVVRVGSRLSQIRFVKERKFCSQEELSALHE 178
P ++ G R+ Q R +K+ E+ L
Sbjct: 88 DFWFFPAYALRDTKIKKGDRICQFRIMKKMPAVDLIEVDRLGN 130
>2ol1_A Deoxyuridine 5'-triphosphate nucleotidohydrolase; fold,
jelly-roll, superfamily, dutpase-like; HET: UMP; 1.80A
{Vaccinia virus} PDB: 2oke_A* 2okd_A* 2ol0_A* 2okb_A
(A:)
Length = 147
Score = 40.3 bits (94), Expect = 4e-04
Identities = 17/162 (10%), Positives = 40/162 (24%), Gaps = 29/162 (17%)
Query: 198 SVDLKGNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPLFSWDAPEGQFILDPNEF 257
+ ++ + ++ R A D+ + + + P E
Sbjct: 7 NSPVRFVKETNRAKSPTRQSPGAAGYDLY------------------SAYD-YTIPPGER 47
Query: 258 YIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGCVLPQEVGAKAVLEVRSS 317
+ + + +P + P + G D + + +L
Sbjct: 48 QLIKTDISMSMPKFCYGRIAPRSGLSLKGIDIGGGVIDEDYRGNI------GVILINNGK 101
Query: 318 VPFVLEHGQIIGRLKYESMDGEPERLYGE----ARGSHYQSQ 355
F + G I +L Y+ + RG
Sbjct: 102 CTFNVNTGDRIAQLIYQRIYYPELEEVQSLDSTNRGDQGFGS 143
Score = 38.4 bits (89), Expect = 0.002
Identities = 18/154 (11%), Positives = 43/154 (27%), Gaps = 26/154 (16%)
Query: 30 QIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIKHFKLREIDLSGG--TVLDANCVYIV 87
+ +R F+ + S + DL + ++
Sbjct: 2 FNMNINSPVR-----------FVKETNRAKSPTRQSPGAAGYDLYSAYDYTIPPGERQLI 50
Query: 88 PLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGPLYLEILPRT-F 146
S+++ P+S + + I +Y G + + ++
Sbjct: 51 KTDISMSMPKFCYGRIAPRSGLSLKGIDIGG--------GVIDEDYRGNIGVILINNGKC 102
Query: 147 PIVVRVGSRLSQIRFVKERKFCSQEELSALHELS 180
V G R++Q+ + + EL + L
Sbjct: 103 TFNVNTGDRIAQLIYQR----IYYPELEEVQSLD 132
>3c2t_A Deoxyuridine triphosphatase; dutpase chlorella virus,
hydrolase; HET: DUD; 3.00A {Paramecium bursaria
chlorella VIRUSIL3A} PDB: 3c3i_A* (A:)
Length = 141
Score = 35.7 bits (82), Expect = 0.008
Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 78 VLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGPL 137
V+ A V S+ + +G P+S + + G I +Y+G +
Sbjct: 35 VVPAMGRIAVSTGISIRVPDGTYGRIAPRSGLAYKYGIDVLAG-------VIDEDYTGEV 87
Query: 138 YLEILP-RTFPIVVRVGSRLSQIRFVK 163
+ + +++ G R++Q+ +
Sbjct: 88 KVILYNTTERDYIIKKGDRIAQLILEQ 114
Score = 35.7 bits (82), Expect = 0.009
Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 11/111 (9%)
Query: 250 FILDPNEFYIFASREFIQIPPSLVAEMIP-YDHSIGEFRVHYAGFFDPGFGCVLPQEVGA 308
++ ++ I++P + P + AG D + +
Sbjct: 34 VVVPAMGRIAVSTGISIRVPDGTYGRIAPRSGLAYKYGIDVLAGVIDEDYTGEV------ 87
Query: 309 KAVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGE----ARGSHYQSQ 355
K +L + ++++ G I +L E + + + ARGS
Sbjct: 88 KVILYNTTERDYIIKKGDRIAQLILEQIVTPGVAVVLDLSDTARGSGGFGS 138
>1euw_A Dutpase, deoxyuridine 5'-triphosphate nucleotidohydrolase;
jelly roll, mercury derivative; 1.05A {Escherichia coli}
(A:)
Length = 152
Score = 33.8 bits (77), Expect = 0.038
Identities = 23/168 (13%), Positives = 48/168 (28%), Gaps = 35/168 (20%)
Query: 198 SVDLKGNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPLFSWDAPEGQFILDPNEF 257
V + +GK+ + A +A +D+ + L P +
Sbjct: 6 DVKILDPRVGKEFPLPTYATSGSAGLDLRA-----------------CLNDAVELAPGDT 48
Query: 258 YIFASREFIQIPPSLVAEMIPYDHSIGEFRVHY-----AGFFDPGF-GCVLPQEVGAKAV 311
+ + I I +A M+ S + G D + G +
Sbjct: 49 TLVPTGLAIHIADPSLAAMM-LPRSGLGHKHGIVLGNLVGLIDSDYQGQL-------MIS 100
Query: 312 LEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGE----ARGSHYQSQ 355
+ R F ++ G+ I ++ + + L + RG
Sbjct: 101 VWNRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGH 148
>1d2v_C Myeloperoxidase; heme-protein, oxidoreductase, peroxidase-
bromide complex; HET: NAG BMA MAN FUC HEM; 1.75A {Homo
sapiens} (C:105-185,C:404-466)
Length = 144
Score = 32.4 bits (74), Expect = 0.093
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 320 FVLEHGQIIGRLKYESMDGEPERLYGEAR---GSHYQ 353
+ EH ++ LK + + ERLY EAR G+ Q
Sbjct: 37 LLREHNRLATELKSLNPRWDGERLYQEARKIVGAMVQ 73
>2gj1_A Lactoperoxidase, LPO; oxidoreductase, metal-binding protein;
HET: NAG MAN HEM; 2.30A {Bos taurus} PDB: 3bxi_A*
2ips_A* 2nqx_A* 2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A*
3eri_A* 3gc1_A* 3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3erh_A*
3faq_A* 2gjm_A* 3fnl_A* 2z5z_A* 2o86_A* ...
(A:221-405,A:520-583)
Length = 249
Score = 30.8 bits (69), Expect = 0.26
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 320 FVLEHGQIIGRLKYESMDGEPERLYGEAR---GSHYQ 353
+ EH ++ LK + E+LY EAR G+ Q
Sbjct: 37 LLREHNRLARELKKLNPHWNGEKLYQEARKILGAFIQ 73
>1cvu_A Prostaglandin H2 synthase-2; COX-2, cyclooxygenase,
prostaglandin, arachidonate, endoperoxide,
oxidoreductase; HET: NAG MAN BOG ACD; 2.40A {Mus
musculus} (A:158-334,A:514-552)
Length = 216
Score = 28.5 bits (63), Expect = 1.4
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 320 FVLEHGQIIGRLKYESMDGEPERLYGEAR---GSHYQ 353
++ EH ++ LK E + E+L+ ++
Sbjct: 117 WLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETI 153
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxidase, prostaglandin
synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL
HEM; 2.00A {Ovis aries} (A:158-406,A:514-553)
Length = 289
Score = 28.1 bits (62), Expect = 1.9
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 320 FVLEHGQIIGRLKYESMDGEPERLYGEAR---GSHYQ 353
++ EH ++ LK E E+L+ AR
Sbjct: 117 WLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETI 153
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster} (C:)
Length = 373
Score = 27.0 bits (58), Expect = 3.7
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 90 MESLNLKNGISAYANPKSSIGRIDVFARV 118
M S+++ G ++ K S I V+ RV
Sbjct: 3 MASMDISGGNTSRQPQKKSNQNIQVYVRV 31
>1ztm_A Fusion glycoprotein; fusion protein, 6-helix bundle,trimer,
post-fusion, viral protein; HET: NAG; 3.05A {Human
parainfluenza virus 3} (A:1-24,A:267-424)
Length = 182
Score = 27.1 bits (60), Expect = 3.8
Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 11/83 (13%)
Query: 111 RIDVFARVIGDRSQEFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQI-----RFVKER 165
+I R++ + DSIS N + LP ++ G+ L
Sbjct: 21 KISQLTRLLNTQIYRVDSISYNIQNREWYIPLPSH---IMTKGAFLGGADVKECIEAFSS 77
Query: 166 KFCSQEELSALHELSPLVQDGLR 188
C + L+ ++ L
Sbjct: 78 YICPSDPGFV---LNHEMESCLS 97
>2poc_A D-fructose-6-, isomerase domain of glutamine-fructose-6-
phosphate transaminase (isomerizing);
glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A
{Candida albicans SC5314} PDB: 2put_A* 2puv_A* 2puw_A*
(A:1-206)
Length = 206
Score = 27.1 bits (59), Expect = 4.0
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
Query: 64 KHFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFAR 117
KHF +EI + + I + L G+ ++ + RI + A
Sbjct: 6 KHFMQKEIFEQPDSAFNTMRGRIDFENCVVTL-GGLKSWLSTIRRCRRIIMIAC 58
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase,
phosphoprotein, transferase, two-component regulatory
system; 3.80A {Thermotoga maritima} (A:1-113,A:195-205)
Length = 124
Score = 26.6 bits (58), Expect = 4.8
Identities = 8/89 (8%), Positives = 20/89 (22%), Gaps = 4/89 (4%)
Query: 245 APEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSI----GEFRVHYAGFFDPGFGC 300
L + +++ Q+ ++ E F+
Sbjct: 17 LETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEEIGSVAESVFENKEPV 76
Query: 301 VLPQEVGAKAVLEVRSSVPFVLEHGQIIG 329
L + +R S + + G
Sbjct: 77 FLNFYKFGERYFNIRFSPFRNAKTQLLEG 105
>2o5n_A MUHV1GPM153; mouse cytomegalovirus, MHC-I-like, M145 family,
MHC- IV, IG-superfamily, alpha-beta protein, viral
protein; HET: NAG BMA NDG; 2.40A {Murid herpesvirus 1}
(A:15-145)
Length = 131
Score = 26.6 bits (58), Expect = 5.4
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 242 SWDAPEGQFILDPNEFYIFASREFIQIPPSLVAE 275
SW PE QF+L EF + +Q P LV E
Sbjct: 53 SW--PEIQFLLQNREFVSKYYADVVQTPGELVVE 84
>1fbv_A Signal transduction protein CBL; CBL, ZAP-70,
phosphorylation, tyrosine kinase, ubiquitination,
protein degradation,, ligase; HET: PTR; 2.90A {Homo
sapiens} (A:131-221,A:308-335)
Length = 119
Score = 26.7 bits (59), Expect = 5.5
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 82 NCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFAR 117
I +E++ LK+ I N S+ D+F R
Sbjct: 35 EVHPISSGLEAMALKSTIDLTCNDYISVFEFDIFTR 70
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction,
proto-oncogene, complex, ATP-binding, glycoprotein,
kinase, membrane, nucleotide-binding; HET: PTR; 1.35A
{Homo sapiens} (B:155-245)
Length = 91
Score = 26.7 bits (59), Expect = 5.5
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 82 NCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFAR 117
I +E++ LK+ I N S+ D+F R
Sbjct: 35 EVHPISSGLEAMALKSTIDLTCNDYISVFEFDIFTR 70
>2fjr_A Repressor protein CI; genetic switch, regulation,
cooperativity, transcription regulator; 1.95A
{Enterobacteria phage 186} PDB: 2fkd_A (A:1-70)
Length = 70
Score = 26.5 bits (59), Expect = 6.1
Identities = 4/30 (13%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 152 VGSRLSQIRFVKERKFCSQEELSALHELSP 181
L +I + F + +L+ +++
Sbjct: 7 NVDVLDRIC--EAYGFSQKIQLANHFDIAS 34
>2cme_A ORF-9B, ORF13, hypothetical protein 5; alternative open
reading frame, lipid-binding, virus assembly; HET: D10;
2.8A {Human sars coronavirus} (A:)
Length = 78
Score = 26.2 bits (57), Expect = 7.3
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Query: 143 PRTFPIVVRVGSRLS------QIRFVKERKFCS 169
P+ +PI++R+GS LS + ++ R F S
Sbjct: 20 PKVYPIILRLGSNLSLSMARRNLDSLEARAFQS 52
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.319 0.138 0.404
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 2,845,453
Number of extensions: 132805
Number of successful extensions: 341
Number of sequences better than 10.0: 1
Number of HSP's gapped: 317
Number of HSP's successfully gapped: 58
Length of query: 367
Length of database: 4,956,049
Length adjustment: 90
Effective length of query: 277
Effective length of database: 1,913,599
Effective search space: 530066923
Effective search space used: 530066923
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)