RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780480|ref|YP_003064893.1| 2'-deoxycytidine 5'-triphosphate deaminase [Candidatus Liberibacter asiaticus str. psy62] (367 letters) >d1pkha_ b.85.4.1 (A:) Bifunctional dCTP deaminase/dUTPase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 182 Score = 101 bits (251), Expect = 1e-22 Identities = 34/174 (19%), Positives = 58/174 (33%), Gaps = 22/174 (12%) Query: 5 VLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIK 64 +L DK I I+ + P K+ + P S D+ L + L +IK Sbjct: 2 ILSDKDIIDYVTSKRIIIK-PFNKDFVGPCSYDVTLGDEFIIYDDEVYDLSKELNYKRIK 60 Query: 65 HFK---------------LREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSI 109 + + E + L N ISA +SS+ Sbjct: 61 IKNSILVCPLNYNLTEEKINYFKEKYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSSL 120 Query: 110 GRIDVFARVIGDRSQEFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVK 163 GR+ + + I + G + LEI+ P+++ R+ Q+ F K Sbjct: 121 GRVFLTSHQTAGW------IDAGFKGKITLEIVAFDKPVILYKNQRIGQLIFSK 168 Score = 63.0 bits (152), Expect = 4e-11 Identities = 20/143 (13%), Positives = 46/143 (32%), Gaps = 11/143 (7%) Query: 210 SIIGYRAKRHTAAIDVDSENKYDESDFW--DPLFSWDAPEGQFILDPNEFYIFASREFIQ 267 + + + I + + ++ + ++ + + + E+I+ Sbjct: 46 EVYDLSKELNYKRIKIKNSILVCPLNYNLTEEKINYFKEKYNVDYVVEGGVLGTTNEYIE 105 Query: 268 IPPSLVAEMIPYDHSI--GEFRVHYAGFFDPGFGCVLPQEVGAKAVLEVRSSVPFVLEHG 325 +P + A+ AG+ D GF G + V P +L Sbjct: 106 LPNDISAQYQGRSSLGRVFLTSHQTAGWIDAGFK-------GKITLEIVAFDKPVILYKN 158 Query: 326 QIIGRLKYESMDGEPERLYGEAR 348 Q IG+L + + + Y E + Sbjct: 159 QRIGQLIFSKLLSPADVGYSERK 181 >d1xs1a_ b.85.4.1 (A:) Deoxycytidine triphosphate deaminase (dCTP deaminase) {Escherichia coli [TaxId: 562]} Length = 193 Score = 93.3 bits (231), Expect = 3e-20 Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 14/167 (8%) Query: 5 VLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGL-----V 59 L D+ I + G + +I A++D+RL +K R ID V Sbjct: 2 RLCDRDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTFRGHTAAFIDLSGPKDEV 61 Query: 60 SDKIKHFKLRE--IDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFAR 117 S + E +D L + + +ES+ L + + + +SS+ R+ + Sbjct: 62 SAALDRVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGLMVH 121 Query: 118 VIGDRSQEFDSISPNYSGPLYLEIL-PRTFPIVVRVGSRLSQIRFVK 163 V R I P +SG + LE P+ +R G + + F Sbjct: 122 VTAHR------IDPGWSGCIVLEFYNSGKLPLALRPGMLIGALSFEP 162 Score = 78.6 bits (193), Expect = 8e-16 Identities = 29/150 (19%), Positives = 47/150 (31%), Gaps = 11/150 (7%) Query: 219 HTAAIDVDSENKYDESDFWDPLFSW--DAPEGQFILDPNEFYIFASREFIQIPPSLVAEM 276 A ID+ + + F L P E + + E + +P LV + Sbjct: 48 TAAFIDLSGPKDEVSAALDRVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPADLVGWL 107 Query: 277 IPYD--HSIGEFRVHYAGFFDPGFGCVLPQEVGAKAVLEVRSSVPFVLEHGQIIGRLKYE 334 +G A DPG+ +P L G +IG L +E Sbjct: 108 DGRSSLARLGLMVHVTAHRIDPGWS------GCIVLEFYNSGKLPLALRPGMLIGALSFE 161 Query: 335 SMDGEPERLYGEARGSHYQSQ-ALKLSKHF 363 + G R Y + Y++Q S+ Sbjct: 162 PLSGPAVRPYNRREDAKYRNQQGAVASRID 191 >d1duna_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase) {Equine infectious anemia virus [TaxId: 11665]} Length = 120 Score = 32.7 bits (74), Expect = 0.045 Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 6/99 (6%) Query: 250 FILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGCVLPQEVGAK 309 ++ ++ I + IQ+PP+ + + + G D G+ + Sbjct: 27 IMIPVSDTKIIPTDVKIQVPPNSFGWVTGKSSMAKQGLLINGGIIDEGYTGE------IQ 80 Query: 310 AVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGEAR 348 + L GQ +L + + E + Sbjct: 81 VICTNIGKSNIKLIEGQKFAQLIILQHHSNSRQPWDENK 119 >g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens) [TaxId: 9606]} Length = 570 Score = 30.1 bits (67), Expect = 0.28 Identities = 11/29 (37%), Positives = 16/29 (55%) Query: 320 FVLEHGQIIGRLKYESMDGEPERLYGEAR 348 + EH ++ LK + + ERLY EAR Sbjct: 245 LLREHNRLATELKSLNPRWDGERLYQEAR 273 >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 Score = 29.3 bits (64), Expect = 0.51 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 1/68 (1%) Query: 26 LEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIKHFKLREIDLSGGTVLDANCVY 85 L + P LS R +D +++ F+++ +DLS + + Sbjct: 7 LTGKNLHPDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 65 Query: 86 IVPLMESL 93 I+ L Sbjct: 66 ILSQCSKL 73 >d2bsya1 b.85.4.1 (A:4-116) Monomeric viral dUTPase {Epstein-barr virus [TaxId: 10376]} Length = 113 Score = 28.6 bits (64), Expect = 0.77 Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 9/82 (10%) Query: 250 FILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGCVLPQEVGAK 309 +L P + + + P M+ S H G DPG+ E+ Sbjct: 31 ILLRPMKTTTVDLGLYARPPEGHGL-MLWGSTSRP-VTSH-VGIIDPGY----TGELRLI 83 Query: 310 AVLEVRSSVPFVLEHGQIIGRL 331 + L ++ L Sbjct: 84 LQ--NQRRYNSTLRPSELKIHL 103 >d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis aries) [TaxId: 9940]} Length = 511 Score = 27.6 bits (61), Expect = 1.5 Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%) Query: 320 FVLEHGQIIGRLKYESMDGEPERLYGEAR---GSHYQ 353 ++ EH ++ LK E E+L+ AR Sbjct: 232 WLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETI 268 >d1c4ka3 d.125.1.1 (A:570-730) Ornithine decarboxylase C-terminal domain {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 161 Score = 27.8 bits (62), Expect = 1.5 Identities = 10/39 (25%), Positives = 20/39 (51%) Query: 275 EMIPYDHSIGEFRVHYAGFFDPGFGCVLPQEVGAKAVLE 313 +++P + GE + A + PG CV P E ++ ++ Sbjct: 72 KLVPLNKIEGEIALEGALPYPPGVFCVAPGEKWSETAVK 110 >d2bsya2 b.85.4.1 (A:121-256) Monomeric viral dUTPase {Epstein-barr virus [TaxId: 10376]} Length = 136 Score = 27.5 bits (61), Expect = 2.0 Identities = 7/92 (7%), Positives = 22/92 (23%), Gaps = 12/92 (13%) Query: 77 TVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGP 136 L + V L +S + + + G Sbjct: 22 LALFPHQTVSVTLTVPPPSIPHHRPTIFGRSGLAMQGILVKP-----------CRWRRGG 70 Query: 137 LYLEILPRT-FPIVVRVGSRLSQIRFVKERKF 167 + + + + + + R Q+ ++ + Sbjct: 71 VDVSLTNFSDQTVFLNKYRRFCQLVYLHKHHL 102 >d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus musculus) [TaxId: 10090]} Length = 511 Score = 27.2 bits (60), Expect = 2.3 Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 3/37 (8%) Query: 320 FVLEHGQIIGRLKYESMDGEPERLYGEAR---GSHYQ 353 ++ EH ++ LK E + E+L+ ++ Sbjct: 233 WLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETI 269 >d1b4ub_ c.56.6.1 (B:) LigB subunit of an aromatic-ring-opening dioxygenase LigAB {Pseudomonas paucimobilis [TaxId: 13689]} Length = 298 Score = 26.9 bits (59), Expect = 2.9 Identities = 13/97 (13%), Positives = 29/97 (29%), Gaps = 19/97 (19%) Query: 211 IIGYRAKRHTAAIDVDSENKYDESDFWDPLFSWDAPEGQFILDPNEFYIFASREFIQIPP 270 + H A+ + ++D+W P+F P +I ++ +P Sbjct: 3 VTTGITSSHIPALGAAIQTGTSDNDYWGPVFKGYQPIRDWI-----------KQPGNMPD 51 Query: 271 SLV------AEMIPYDH--SIGEFRVHYAGFFDPGFG 299 ++ A + + D G+G Sbjct: 52 VVILVYNDHASAFDMNIIPTFAIGCAETFKPADEGWG 88 >d3bnea2 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Length = 143 Score = 26.7 bits (59), Expect = 3.5 Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 15/87 (17%) Query: 183 VQDGLRDFSGKGVALSV------DLKGNEIGKKSIIGYRAKR-HTAAIDVDSENKYDESD 235 D L F G+ V+L + D G GK + + E+ ++ Sbjct: 22 AVDNLNAFLGRSVSLQLISATKADAHGK--GKVGKDTFLEGINTSLPTLGAGESAFNIHF 79 Query: 236 FWDPLFSWDAPEGQFILD---PNEFYI 259 WD G F + EF++ Sbjct: 80 EWDGSM---GIPGAFYIKNYMQVEFFL 103 >d2cmea1 b.164.1.1 (A:9-98) Hypothetical protein 5 (ORF-9b) {SARS coronavirus [TaxId: 227859]} Length = 78 Score = 25.5 bits (55), Expect = 6.5 Identities = 8/15 (53%), Positives = 13/15 (86%) Query: 143 PRTFPIVVRVGSRLS 157 P+ +PI++R+GS LS Sbjct: 20 PKVYPIILRLGSNLS 34 >d1szia_ a.24.23.1 (A:) Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 226 Score = 25.2 bits (55), Expect = 7.9 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 9/45 (20%) Query: 149 VVRVGSRLSQIRF---------VKERKFCSQEELSALHELSPLVQ 184 VR+GS ++R ++ + +QE L L + L++ Sbjct: 35 FVRLGSLSERLRNHAYEHSLGKLQNARQKAQETLQQLTSVLGLME 79 >d1vhba_ a.1.1.2 (A:) Bacterial dimeric hemoglobin {Vitreoscilla stercoraria [TaxId: 61]} Length = 144 Score = 24.9 bits (54), Expect = 9.7 Identities = 7/23 (30%), Positives = 15/23 (65%) Query: 314 VRSSVPFVLEHGQIIGRLKYESM 336 ++++VP + EHG I Y+++ Sbjct: 9 IKATVPVLKEHGVTITTTFYKNL 31 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.138 0.404 Gapped Lambda K H 0.267 0.0517 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,394,970 Number of extensions: 67853 Number of successful extensions: 132 Number of sequences better than 10.0: 1 Number of HSP's gapped: 126 Number of HSP's successfully gapped: 21 Length of query: 367 Length of database: 2,407,596 Length adjustment: 87 Effective length of query: 280 Effective length of database: 1,213,086 Effective search space: 339664080 Effective search space used: 339664080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 53 (24.7 bits)