RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780480|ref|YP_003064893.1| 2'-deoxycytidine
5'-triphosphate deaminase [Candidatus Liberibacter asiaticus str.
psy62]
(367 letters)
>d1pkha_ b.85.4.1 (A:) Bifunctional dCTP deaminase/dUTPase {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 182
Score = 101 bits (251), Expect = 1e-22
Identities = 34/174 (19%), Positives = 58/174 (33%), Gaps = 22/174 (12%)
Query: 5 VLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIK 64
+L DK I I+ + P K+ + P S D+ L + L +IK
Sbjct: 2 ILSDKDIIDYVTSKRIIIK-PFNKDFVGPCSYDVTLGDEFIIYDDEVYDLSKELNYKRIK 60
Query: 65 HFK---------------LREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSI 109
+ + E + L N ISA +SS+
Sbjct: 61 IKNSILVCPLNYNLTEEKINYFKEKYNVDYVVEGGVLGTTNEYIELPNDISAQYQGRSSL 120
Query: 110 GRIDVFARVIGDRSQEFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVK 163
GR+ + + I + G + LEI+ P+++ R+ Q+ F K
Sbjct: 121 GRVFLTSHQTAGW------IDAGFKGKITLEIVAFDKPVILYKNQRIGQLIFSK 168
Score = 63.0 bits (152), Expect = 4e-11
Identities = 20/143 (13%), Positives = 46/143 (32%), Gaps = 11/143 (7%)
Query: 210 SIIGYRAKRHTAAIDVDSENKYDESDFW--DPLFSWDAPEGQFILDPNEFYIFASREFIQ 267
+ + + I + + ++ + ++ + + + E+I+
Sbjct: 46 EVYDLSKELNYKRIKIKNSILVCPLNYNLTEEKINYFKEKYNVDYVVEGGVLGTTNEYIE 105
Query: 268 IPPSLVAEMIPYDHSI--GEFRVHYAGFFDPGFGCVLPQEVGAKAVLEVRSSVPFVLEHG 325
+P + A+ AG+ D GF G + V P +L
Sbjct: 106 LPNDISAQYQGRSSLGRVFLTSHQTAGWIDAGFK-------GKITLEIVAFDKPVILYKN 158
Query: 326 QIIGRLKYESMDGEPERLYGEAR 348
Q IG+L + + + Y E +
Sbjct: 159 QRIGQLIFSKLLSPADVGYSERK 181
>d1xs1a_ b.85.4.1 (A:) Deoxycytidine triphosphate deaminase (dCTP
deaminase) {Escherichia coli [TaxId: 562]}
Length = 193
Score = 93.3 bits (231), Expect = 3e-20
Identities = 36/167 (21%), Positives = 63/167 (37%), Gaps = 14/167 (8%)
Query: 5 VLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGL-----V 59
L D+ I + G + +I A++D+RL +K R ID V
Sbjct: 2 RLCDRDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTFRGHTAAFIDLSGPKDEV 61
Query: 60 SDKIKHFKLRE--IDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFAR 117
S + E +D L + + +ES+ L + + + +SS+ R+ +
Sbjct: 62 SAALDRVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPADLVGWLDGRSSLARLGLMVH 121
Query: 118 VIGDRSQEFDSISPNYSGPLYLEIL-PRTFPIVVRVGSRLSQIRFVK 163
V R I P +SG + LE P+ +R G + + F
Sbjct: 122 VTAHR------IDPGWSGCIVLEFYNSGKLPLALRPGMLIGALSFEP 162
Score = 78.6 bits (193), Expect = 8e-16
Identities = 29/150 (19%), Positives = 47/150 (31%), Gaps = 11/150 (7%)
Query: 219 HTAAIDVDSENKYDESDFWDPLFSW--DAPEGQFILDPNEFYIFASREFIQIPPSLVAEM 276
A ID+ + + F L P E + + E + +P LV +
Sbjct: 48 TAAFIDLSGPKDEVSAALDRVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPADLVGWL 107
Query: 277 IPYD--HSIGEFRVHYAGFFDPGFGCVLPQEVGAKAVLEVRSSVPFVLEHGQIIGRLKYE 334
+G A DPG+ +P L G +IG L +E
Sbjct: 108 DGRSSLARLGLMVHVTAHRIDPGWS------GCIVLEFYNSGKLPLALRPGMLIGALSFE 161
Query: 335 SMDGEPERLYGEARGSHYQSQ-ALKLSKHF 363
+ G R Y + Y++Q S+
Sbjct: 162 PLSGPAVRPYNRREDAKYRNQQGAVASRID 191
>d1duna_ b.85.4.1 (A:) Deoxyuridine 5'-triphosphate
nucleotidohydrolase (dUTPase) {Equine infectious anemia
virus [TaxId: 11665]}
Length = 120
Score = 32.7 bits (74), Expect = 0.045
Identities = 13/99 (13%), Positives = 30/99 (30%), Gaps = 6/99 (6%)
Query: 250 FILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGCVLPQEVGAK 309
++ ++ I + IQ+PP+ + + + G D G+ +
Sbjct: 27 IMIPVSDTKIIPTDVKIQVPPNSFGWVTGKSSMAKQGLLINGGIIDEGYTGE------IQ 80
Query: 310 AVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGEAR 348
+ L GQ +L + + E +
Sbjct: 81 VICTNIGKSNIKLIEGQKFAQLIILQHHSNSRQPWDENK 119
>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 570
Score = 30.1 bits (67), Expect = 0.28
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 320 FVLEHGQIIGRLKYESMDGEPERLYGEAR 348
+ EH ++ LK + + ERLY EAR
Sbjct: 245 LLREHNRLATELKSLNPRWDGERLYQEAR 273
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 29.3 bits (64), Expect = 0.51
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 26 LEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVSDKIKHFKLREIDLSGGTVLDANCVY 85
L + P LS R +D +++ F+++ +DLS + +
Sbjct: 7 LTGKNLHPDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 65
Query: 86 IVPLMESL 93
I+ L
Sbjct: 66 ILSQCSKL 73
>d2bsya1 b.85.4.1 (A:4-116) Monomeric viral dUTPase {Epstein-barr
virus [TaxId: 10376]}
Length = 113
Score = 28.6 bits (64), Expect = 0.77
Identities = 13/82 (15%), Positives = 23/82 (28%), Gaps = 9/82 (10%)
Query: 250 FILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGCVLPQEVGAK 309
+L P + + + P M+ S H G DPG+ E+
Sbjct: 31 ILLRPMKTTTVDLGLYARPPEGHGL-MLWGSTSRP-VTSH-VGIIDPGY----TGELRLI 83
Query: 310 AVLEVRSSVPFVLEHGQIIGRL 331
+ L ++ L
Sbjct: 84 LQ--NQRRYNSTLRPSELKIHL 103
>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis
aries) [TaxId: 9940]}
Length = 511
Score = 27.6 bits (61), Expect = 1.5
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 320 FVLEHGQIIGRLKYESMDGEPERLYGEAR---GSHYQ 353
++ EH ++ LK E E+L+ AR
Sbjct: 232 WLREHNRVCDLLKAEHPTWGDEQLFQTARLILIGETI 268
>d1c4ka3 d.125.1.1 (A:570-730) Ornithine decarboxylase C-terminal
domain {Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 161
Score = 27.8 bits (62), Expect = 1.5
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 275 EMIPYDHSIGEFRVHYAGFFDPGFGCVLPQEVGAKAVLE 313
+++P + GE + A + PG CV P E ++ ++
Sbjct: 72 KLVPLNKIEGEIALEGALPYPPGVFCVAPGEKWSETAVK 110
>d2bsya2 b.85.4.1 (A:121-256) Monomeric viral dUTPase {Epstein-barr
virus [TaxId: 10376]}
Length = 136
Score = 27.5 bits (61), Expect = 2.0
Identities = 7/92 (7%), Positives = 22/92 (23%), Gaps = 12/92 (13%)
Query: 77 TVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGP 136
L + V L +S + + + G
Sbjct: 22 LALFPHQTVSVTLTVPPPSIPHHRPTIFGRSGLAMQGILVKP-----------CRWRRGG 70
Query: 137 LYLEILPRT-FPIVVRVGSRLSQIRFVKERKF 167
+ + + + + + R Q+ ++ +
Sbjct: 71 VDVSLTNFSDQTVFLNKYRRFCQLVYLHKHHL 102
>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 511
Score = 27.2 bits (60), Expect = 2.3
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 320 FVLEHGQIIGRLKYESMDGEPERLYGEAR---GSHYQ 353
++ EH ++ LK E + E+L+ ++
Sbjct: 233 WLREHQRVCDILKQEHPEWGDEQLFQTSKLILIGETI 269
>d1b4ub_ c.56.6.1 (B:) LigB subunit of an aromatic-ring-opening
dioxygenase LigAB {Pseudomonas paucimobilis [TaxId:
13689]}
Length = 298
Score = 26.9 bits (59), Expect = 2.9
Identities = 13/97 (13%), Positives = 29/97 (29%), Gaps = 19/97 (19%)
Query: 211 IIGYRAKRHTAAIDVDSENKYDESDFWDPLFSWDAPEGQFILDPNEFYIFASREFIQIPP 270
+ H A+ + ++D+W P+F P +I ++ +P
Sbjct: 3 VTTGITSSHIPALGAAIQTGTSDNDYWGPVFKGYQPIRDWI-----------KQPGNMPD 51
Query: 271 SLV------AEMIPYDH--SIGEFRVHYAGFFDPGFG 299
++ A + + D G+G
Sbjct: 52 VVILVYNDHASAFDMNIIPTFAIGCAETFKPADEGWG 88
>d3bnea2 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Glycine
max), isozyme L1 [TaxId: 3847]}
Length = 143
Score = 26.7 bits (59), Expect = 3.5
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 15/87 (17%)
Query: 183 VQDGLRDFSGKGVALSV------DLKGNEIGKKSIIGYRAKR-HTAAIDVDSENKYDESD 235
D L F G+ V+L + D G GK + + E+ ++
Sbjct: 22 AVDNLNAFLGRSVSLQLISATKADAHGK--GKVGKDTFLEGINTSLPTLGAGESAFNIHF 79
Query: 236 FWDPLFSWDAPEGQFILD---PNEFYI 259
WD G F + EF++
Sbjct: 80 EWDGSM---GIPGAFYIKNYMQVEFFL 103
>d2cmea1 b.164.1.1 (A:9-98) Hypothetical protein 5 (ORF-9b) {SARS
coronavirus [TaxId: 227859]}
Length = 78
Score = 25.5 bits (55), Expect = 6.5
Identities = 8/15 (53%), Positives = 13/15 (86%)
Query: 143 PRTFPIVVRVGSRLS 157
P+ +PI++R+GS LS
Sbjct: 20 PKVYPIILRLGSNLS 34
>d1szia_ a.24.23.1 (A:) Mannose-6-phosphate receptor binding protein
1 (Tip47), C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 226
Score = 25.2 bits (55), Expect = 7.9
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 149 VVRVGSRLSQIRF---------VKERKFCSQEELSALHELSPLVQ 184
VR+GS ++R ++ + +QE L L + L++
Sbjct: 35 FVRLGSLSERLRNHAYEHSLGKLQNARQKAQETLQQLTSVLGLME 79
>d1vhba_ a.1.1.2 (A:) Bacterial dimeric hemoglobin {Vitreoscilla
stercoraria [TaxId: 61]}
Length = 144
Score = 24.9 bits (54), Expect = 9.7
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 314 VRSSVPFVLEHGQIIGRLKYESM 336
++++VP + EHG I Y+++
Sbjct: 9 IKATVPVLKEHGVTITTTFYKNL 31
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.404
Gapped
Lambda K H
0.267 0.0517 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,394,970
Number of extensions: 67853
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 21
Length of query: 367
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 280
Effective length of database: 1,213,086
Effective search space: 339664080
Effective search space used: 339664080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.7 bits)