BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780480|ref|YP_003064893.1| 2'-deoxycytidine 5'-triphosphate deaminase [Candidatus Liberibacter asiaticus str. psy62] (367 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780480|ref|YP_003064893.1| 2'-deoxycytidine 5'-triphosphate deaminase [Candidatus Liberibacter asiaticus str. psy62] Length = 367 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/367 (100%), Positives = 367/367 (100%) Query: 1 MNKGVLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVS 60 MNKGVLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVS Sbjct: 1 MNKGVLPDKAIATLAERGDIVSEHPLEKNQIQPASIDLRLSSKAYRVRASFLPNIDGLVS 60 Query: 61 DKIKHFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIG 120 DKIKHFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIG Sbjct: 61 DKIKHFKLREIDLSGGTVLDANCVYIVPLMESLNLKNGISAYANPKSSIGRIDVFARVIG 120 Query: 121 DRSQEFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVKERKFCSQEELSALHELS 180 DRSQEFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVKERKFCSQEELSALHELS Sbjct: 121 DRSQEFDSISPNYSGPLYLEILPRTFPIVVRVGSRLSQIRFVKERKFCSQEELSALHELS 180 Query: 181 PLVQDGLRDFSGKGVALSVDLKGNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPL 240 PLVQDGLRDFSGKGVALSVDLKGNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPL Sbjct: 181 PLVQDGLRDFSGKGVALSVDLKGNEIGKKSIIGYRAKRHTAAIDVDSENKYDESDFWDPL 240 Query: 241 FSWDAPEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGC 300 FSWDAPEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGC Sbjct: 241 FSWDAPEGQFILDPNEFYIFASREFIQIPPSLVAEMIPYDHSIGEFRVHYAGFFDPGFGC 300 Query: 301 VLPQEVGAKAVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQALKLS 360 VLPQEVGAKAVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQALKLS Sbjct: 301 VLPQEVGAKAVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQALKLS 360 Query: 361 KHFHQTQ 367 KHFHQTQ Sbjct: 361 KHFHQTQ 367 >gi|254780270|ref|YP_003064683.1| ATP-dependent protease La [Candidatus Liberibacter asiaticus str. psy62] Length = 820 Score = 25.4 bits (54), Expect = 1.4, Method: Compositional matrix adjust. Identities = 11/29 (37%), Positives = 19/29 (65%) Query: 154 SRLSQIRFVKERKFCSQEELSALHELSPL 182 +R+S+IR KE + + EL L +++PL Sbjct: 273 ARISKIRLSKEAREKALSELQKLRQMNPL 301 >gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus str. psy62] Length = 440 Score = 25.4 bits (54), Expect = 1.7, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 19/42 (45%) Query: 305 EVGAKAVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGE 346 E G +LE S + ++ RL E M GE LYG+ Sbjct: 119 ENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQ 160 >gi|254781012|ref|YP_003065425.1| dihydroorotase [Candidatus Liberibacter asiaticus str. psy62] Length = 349 Score = 24.6 bits (52), Expect = 3.0, Method: Compositional matrix adjust. Identities = 12/45 (26%), Positives = 21/45 (46%) Query: 89 LMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNY 133 ++E + NGI N + G I V +I + D ++P+Y Sbjct: 171 ILEHITTSNGIDYVNNATNIAGSITVHHLIINRNAIFHDGLNPHY 215 >gi|254781097|ref|YP_003065510.1| N-acetylglucosaminyl transferase [Candidatus Liberibacter asiaticus str. psy62] Length = 369 Score = 24.3 bits (51), Expect = 3.6, Method: Compositional matrix adjust. Identities = 9/26 (34%), Positives = 16/26 (61%) Query: 274 AEMIPYDHSIGEFRVHYAGFFDPGFG 299 A ++PY HS+ + ++H A + G G Sbjct: 282 AILVPYPHSVDQDQLHNAYYLQEGGG 307 >gi|254780236|ref|YP_003064649.1| 50S ribosomal protein L17 [Candidatus Liberibacter asiaticus str. psy62] Length = 136 Score = 24.3 bits (51), Expect = 3.8, Method: Compositional matrix adjust. Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 5/61 (8%) Query: 86 IVPLMESLNLKNGISAYANPKSSIGRIDVFARVIGDRSQEFDSISPNYSGPLYLEILPRT 145 IV + +L K G+ + S IG +DV ++ G ++ + S YL I+ R Sbjct: 47 IVEKLVTLGKKGGLHSLRLAISKIGDVDVVNKLFGIIAKRYSDRSGG-----YLRIMKRG 101 Query: 146 F 146 F Sbjct: 102 F 102 >gi|254780868|ref|YP_003065281.1| birA bifunctional protein [Candidatus Liberibacter asiaticus str. psy62] Length = 252 Score = 23.5 bits (49), Expect = 5.3, Method: Compositional matrix adjust. Identities = 9/13 (69%), Positives = 12/13 (92%) Query: 89 LMESLNLKNGISA 101 L+E+LNLKNG+ A Sbjct: 125 LIETLNLKNGLQA 137 >gi|254780291|ref|YP_003064704.1| hypothetical protein CLIBASIA_00880 [Candidatus Liberibacter asiaticus str. psy62] Length = 475 Score = 23.5 bits (49), Expect = 5.7, Method: Compositional matrix adjust. Identities = 11/20 (55%), Positives = 14/20 (70%) Query: 70 EIDLSGGTVLDANCVYIVPL 89 +I LS GT L+ + VY VPL Sbjct: 112 KIPLSQGTYLNLHAVYHVPL 131 >gi|254780703|ref|YP_003065116.1| putative phosphate transport system protein [Candidatus Liberibacter asiaticus str. psy62] Length = 229 Score = 23.5 bits (49), Expect = 6.6, Method: Compositional matrix adjust. Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 3/58 (5%) Query: 302 LPQEVGAKAVLEVRSSVPFVLEHGQIIGRLKYESMDGEPERLYGEARGSHYQSQALKL 359 L +++G KA++ + P + +I+G +K + + ER+ A+ + + AL++ Sbjct: 59 LERDIGDKAIITIAKRQPMASDLREIVGSIK---IAADLERIGDLAKNTAKRVLALQM 113 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.138 0.404 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 243,973 Number of Sequences: 1233 Number of extensions: 10729 Number of successful extensions: 26 Number of sequences better than 100.0: 9 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 9 length of query: 367 length of database: 328,796 effective HSP length: 75 effective length of query: 292 effective length of database: 236,321 effective search space: 69005732 effective search space used: 69005732 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 39 (19.6 bits)