Query gi|254780481|ref|YP_003064894.1| 50S ribosomal protein L34 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 44
No_of_seqs 108 out of 336
Neff 3.0
Searched_HMMs 33803
Date Wed Jun 1 13:06:32 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780481.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3i1n_2 50S ribosomal protein 99.9 3.7E-26 1.1E-30 140.4 2.5 44 1-44 1-44 (46)
2 >2j01_7 50S ribosomal protein 99.9 6.7E-26 2E-30 139.2 2.3 44 1-44 1-44 (49)
3 >3bbo_4 Ribosomal protein L34; 99.9 3.9E-23 1.2E-27 126.5 -0.3 44 1-44 96-140 (152)
4 >2ftc_Q L34MT, MRP-L34, 39S ri 99.8 1.7E-19 4.9E-24 109.8 2.3 38 5-42 1-38 (38)
5 >1w18_A Levansucrase; transfer 5.2 2.5E+02 0.0074 12.4 0.9 17 3-19 185-201 (203)
6 >2jpj_A Bacteriocin lactococci 4.0 1E+02 0.0031 14.2 -1.8 11 6-16 29-39 (39)
7 >3doc_A Glyceraldehyde 3-phosp 3.6 3.6E+02 0.011 11.7 0.7 22 4-25 140-162 (170)
8 >2eo2_A Adult MALE hypothalamu 3.3 2E+02 0.0058 12.9 -0.8 17 2-18 26-42 (71)
9 >3eae_A Hepatoma-derived growt 3.3 3.9E+02 0.011 11.6 0.6 18 1-18 1-18 (93)
10 >2jz4_A Jasmonate inducible pr 3.2 4.1E+02 0.012 11.4 0.7 6 2-7 30-35 (51)
No 1
>>3i1n_2 50S ribosomal protein L34; ribosome structure, protein-RNA complex, acetylation, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA- binding, methylation; 3.19A {Escherichia coli k-12} PDB: 1vs8_2 2aw4_2 2awb_2 1vs6_2 2i2v_2 2j28_2 2i2t_2* 2qao_2* 2qba_2* 2qbc_2* 2qbe_2 2qbg_2 2qbi_2* 2qbk_2* 2qov_2 2qox_2 2qoz_2* 2qp1_2* 2rdo_2 2vhm_2 ... (2:)
Probab=99.92 E-value=3.7e-26 Score=140.38 Aligned_cols=44 Identities=55% Similarity=0.909 Sum_probs=43.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 98876787841012332355415977799999999700265229
Q gi|254780481|r 1 MKRTYNPSNIVRKRRCGFLARMSTRSGIRILNRRRSKGRKRLSA 44 (44)
Q Consensus 1 mKrTyQPs~~kRkr~HGF~~Rm~T~~GRkvL~rRr~KGR~~Lsa 44 (44)
||||||||+++|+++|||++||+|++||+||++|++|||+.|||
T Consensus 1 MkrTyQPs~~kRkr~HGF~~Rm~T~~GRkVl~rRr~KGR~~Ls~ 44 (46)
T 3i1n_2 1 MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTV 44 (46)
T ss_dssp CCCSCCCCHHHHHHHSSHHHHTTSHHHHHHHHHHHHHTCSCSSC
T ss_pred CCCCCCCCCCEECCCCCHHHHCCCHHHHHHHHHHHHCCCCEEEE
T ss_conf 98776885211321004788706730199999999849806562
No 2
>>2j01_7 50S ribosomal protein L34; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} (7:)
Probab=99.91 E-value=6.7e-26 Score=139.19 Aligned_cols=44 Identities=50% Similarity=0.795 Sum_probs=43.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 98876787841012332355415977799999999700265229
Q gi|254780481|r 1 MKRTYNPSNIVRKRRCGFLARMSTRSGIRILNRRRSKGRKRLSA 44 (44)
Q Consensus 1 mKrTyQPs~~kRkr~HGF~~Rm~T~~GRkvL~rRr~KGR~~Lsa 44 (44)
||||||||+++|+++|||++||+|++||+||++|++|||+.|||
T Consensus 1 MkrTyQPs~~kRkr~HGF~~Rm~T~~GRkvL~rRr~KGR~~Ls~ 44 (49)
T 2j01_7 1 MKRTWQPNRRKRAKTHGFRARMRTPGGRKVLKRRRQKGRWRLTP 44 (49)
T ss_dssp CCCSCCCCHHHHHHHHSHHHHHHSHHHHHHHHHHHHHTCSCSSC
T ss_pred CCCCCCCCCEEECCHHCHHHHCCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 98777986200200015888717720199999999839928632
No 3
>>3bbo_4 Ribosomal protein L34; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} (4:)
Probab=99.85 E-value=3.9e-23 Score=126.49 Aligned_cols=44 Identities=45% Similarity=0.540 Sum_probs=42.6
Q ss_pred CCCCCCC-CCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9887678-7841012332355415977799999999700265229
Q gi|254780481|r 1 MKRTYNP-SNIVRKRRCGFLARMSTRSGIRILNRRRSKGRKRLSA 44 (44)
Q Consensus 1 mKrTyQP-s~~kRkr~HGF~~Rm~T~~GRkvL~rRr~KGR~~Lsa 44 (44)
||+|||| |+++|+|+|||++||+|++||+||++|++||||+||.
T Consensus 96 ~~~t~qp~s~~~r~r~hGf~~R~~t~~Gr~vl~rR~~kgR~~l~~ 140 (152)
T 3bbo_4 96 LCLTKRSRSRKSLARTHGFRLRMSTTSGRALLKRRRAKGRKILCT 140 (152)
T ss_dssp --------CTTHHHHTSCHHHHHHSGGGTTTTHHHHTTTCSCSCC
T ss_pred EEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEECC
T ss_conf 015122201567776421655315763188998876458546325
No 4
>>2ftc_Q L34MT, MRP-L34, 39S ribosomal protein L34, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} (Q:)
Probab=99.76 E-value=1.7e-19 Score=109.82 Aligned_cols=38 Identities=50% Similarity=0.868 Sum_probs=37.4
Q ss_pred CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Q ss_conf 67878410123323554159777999999997002652
Q gi|254780481|r 5 YNPSNIVRKRRCGFLARMSTRSGIRILNRRRSKGRKRL 42 (44)
Q Consensus 5 yQPs~~kRkr~HGF~~Rm~T~~GRkvL~rRr~KGR~~L 42 (44)
||||+++|||+|||++||+|++|++||++|++||||+|
T Consensus 1 yqPs~~kRkr~hGflaR~~t~~GrkVl~RR~~KGR~~L 38 (38)
T 2ftc_Q 1 YQPSNIKRKNKHGWVRRLSTPAGVQVILRRMLKGRKSL 38 (38)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
T ss_conf 99741235443507888357200999999997474369
No 5
>>1w18_A Levansucrase; transferase, fructosyl transferase, glycosyltransferase; 2.5A {Gluconacetobacter diazotrophicus} (A:49-236,A:479-493)
Probab=5.21 E-value=2.5e+02 Score=12.42 Aligned_cols=17 Identities=29% Similarity=0.554 Sum_probs=13.7
Q ss_pred CCCCCCCCCCHHHHHHH
Q ss_conf 87678784101233235
Q gi|254780481|r 3 RTYNPSNIVRKRRCGFL 19 (44)
Q Consensus 3 rTyQPs~~kRkr~HGF~ 19 (44)
..|||.++--.+--||.
T Consensus 185 ~~YQ~~~~~~~~~~~~~ 201 (203)
T 1w18_A 185 VLYQPANRADVNIAGFI 201 (203)
T ss_dssp SSBCCCSEEECCHHHHT
T ss_pred HHHCCCCCCHHHHHCCC
T ss_conf 76503652111211013
No 6
>>2jpj_A Bacteriocin lactococcin-G subunit alpha; peptide, anti-microbial, membrane bound, antimicrobial protein; NMR {Lactococcus lactis} PDB: 2jpl_A (A:)
Probab=3.98 E-value=1e+02 Score=14.17 Aligned_cols=11 Identities=36% Similarity=0.525 Sum_probs=4.5
Q ss_pred CCCCCCCHHHH
Q ss_conf 78784101233
Q gi|254780481|r 6 NPSNIVRKRRC 16 (44)
Q Consensus 6 QPs~~kRkr~H 16 (44)
|.|.+-||.+|
T Consensus 29 qasrinrkkkh 39 (39)
T 2jpj_A 29 QASRINRKKKH 39 (39)
T ss_dssp HHHHHHGGGCC
T ss_pred HHHHHHHHCCC
T ss_conf 78874130059
No 7
>>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} (A:1-151,A:317-335)
Probab=3.62 E-value=3.6e+02 Score=11.71 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=16.3
Q ss_pred CCCCC-CCCCHHHHHHHHHHCCH
Q ss_conf 76787-84101233235541597
Q gi|254780481|r 4 TYNPS-NIVRKRRCGFLARMSTR 25 (44)
Q Consensus 4 TyQPs-~~kRkr~HGF~~Rm~T~ 25 (44)
+|.|+ ++.-.-..||-+||+..
T Consensus 140 ~y~~~~~IISnA~~~~~~~~~~~ 162 (170)
T 3doc_A 140 KLTKDHLVISNAEWGFSSRMSDT 162 (170)
T ss_dssp GCCTTCCEEECCTHHHHHHHHHH
T ss_pred HCCCCCCEEECCHHHHHHHHHHH
T ss_conf 32888848966718999999999
No 8
>>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=3.35 E-value=2e+02 Score=12.91 Aligned_cols=17 Identities=18% Similarity=0.456 Sum_probs=12.3
Q ss_pred CCCCCCCCCCCHHHHHH
Q ss_conf 88767878410123323
Q gi|254780481|r 2 KRTYNPSNIVRKRRCGF 18 (44)
Q Consensus 2 KrTyQPs~~kRkr~HGF 18 (44)
+|.|.|..++|-.+-|.
T Consensus 26 ~R~Fs~iqlrRL~kLGI 42 (71)
T 2eo2_A 26 VREFSEIQLSRLKKLGI 42 (71)
T ss_dssp SCCCCHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHCCC
T ss_conf 20579999999999299
No 9
>>3eae_A Hepatoma-derived growth factor-related protein 2; human hepatoma-derived growth factor 2, HDGF2, structural genomics; 2.24A {Homo sapiens} PDB: 1n27_A (A:)
Probab=3.25 E-value=3.9e+02 Score=11.55 Aligned_cols=18 Identities=22% Similarity=0.621 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCHHHHHH
Q ss_conf 988767878410123323
Q gi|254780481|r 1 MKRTYNPSNIVRKRRCGF 18 (44)
Q Consensus 1 mKrTyQPs~~kRkr~HGF 18 (44)
|-++|+|..+.=.+..||
T Consensus 1 M~~~~~~GdlVWaK~~g~ 18 (93)
T 3eae_A 1 MPHAFKPGDLVFAKMKGY 18 (93)
T ss_dssp -CCCCCTTCEEEECCTTS
T ss_pred CCCCCCCCCEEEEECCCC
T ss_conf 985465798999967897
No 10
>>2jz4_A Jasmonate inducible protein isolog; myrosinase binding protein, AT3G16450.1, SAIL, stereo-array isotope labeling, structural genomics; NMR {Arabidopsis thaliana} (A:224-274)
Probab=3.25 E-value=4.1e+02 Score=11.45 Aligned_cols=6 Identities=50% Similarity=0.700 Sum_probs=0.0
Q ss_pred CCCCCC
Q ss_conf 887678
Q gi|254780481|r 2 KRTYNP 7 (44)
Q Consensus 2 KrTyQP 7 (44)
|+||.|
T Consensus 30 ~~tygP 35 (51)
T 2jz4_A 30 KQTSAP 35 (51)
T ss_dssp SSCCCC
T ss_pred CCCCCC
T ss_conf 994368
Done!