Query gi|254780481|ref|YP_003064894.1| 50S ribosomal protein L34 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 44
No_of_seqs 108 out of 336
Neff 3.0
Searched_HMMs 13730
Date Wed Jun 1 06:02:04 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780481.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2jz6a1 d.325.1.1 (A:6-75) Rib 1.5 3.2E+02 0.023 10.1 0.8 10 2-11 26-35 (70)
2 d2qamz1 d.325.1.1 (Z:2-78) Rib 1.3 3.6E+02 0.026 9.9 0.7 10 2-11 25-34 (77)
3 d1rq6a_ a.4.15.1 (A:) ribosoma 1.3 3.7E+02 0.027 9.9 1.0 19 4-22 39-57 (62)
4 d2b0la1 a.4.5.66 (A:167-257) G 1.1 4.3E+02 0.031 9.5 0.1 5 1-5 71-75 (91)
5 d1ewqa1 a.113.1.1 (A:267-541) 1.1 4.3E+02 0.032 9.5 2.1 21 16-36 7-27 (275)
6 d1f45b_ a.26.1.1 (B:) Heterodi 1.0 4.7E+02 0.034 9.4 -0.0 11 16-26 159-169 (178)
7 d2zjru1 d.325.1.1 (U:8-79) Rib 1.0 4.7E+02 0.035 9.3 0.8 7 2-8 32-38 (72)
8 d2gych1 c.21.1.1 (H:1-140) Rib 1.0 4.9E+02 0.036 9.2 1.0 8 1-9 1-8 (140)
9 d1stza1 a.4.5.51 (A:14-100) He 0.9 2.4E+02 0.018 10.7 -1.7 14 15-28 51-64 (87)
10 d1kn6a_ d.58.3.3 (A:) Prohormo 0.9 5.4E+02 0.039 9.1 0.2 6 13-18 20-25 (73)
No 1
>d2jz6a1 d.325.1.1 (A:6-75) Ribosomal protein L28 (L28p) {Thermotoga maritima [TaxId: 2336]}
Probab=1.45 E-value=3.2e+02 Score=10.12 Aligned_cols=10 Identities=20% Similarity=0.325 Sum_probs=6.4
Q ss_pred CCCCCCCCCC
Q ss_conf 8876787841
Q gi|254780481|r 2 KRTYNPSNIV 11 (44)
Q Consensus 2 KrTyQPs~~k 11 (44)
||+|.|+-.+
T Consensus 26 kR~f~PNlq~ 35 (70)
T d2jz6a1 26 ERWFRPNLQK 35 (70)
T ss_dssp SSSCBTTEEE
T ss_pred CCEECCCEEE
T ss_conf 7526477089
No 2
>d2qamz1 d.325.1.1 (Z:2-78) Ribosomal protein L28 (L28p) {Escherichia coli [TaxId: 562]}
Probab=1.29 E-value=3.6e+02 Score=9.89 Aligned_cols=10 Identities=30% Similarity=0.404 Sum_probs=6.4
Q ss_pred CCCCCCCCCC
Q ss_conf 8876787841
Q gi|254780481|r 2 KRTYNPSNIV 11 (44)
Q Consensus 2 KrTyQPs~~k 11 (44)
+|+|.|+-.+
T Consensus 25 kR~~~pNlq~ 34 (77)
T d2qamz1 25 KRRFLPNLHS 34 (77)
T ss_dssp BCCCCCCCCC
T ss_pred CCEECCCEEE
T ss_conf 7566464389
No 3
>d1rq6a_ a.4.15.1 (A:) ribosomal protein S17e {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=1.27 E-value=3.7e+02 Score=9.85 Aligned_cols=19 Identities=16% Similarity=0.497 Sum_probs=13.9
Q ss_pred CCCCCCCCCHHHHHHHHHH
Q ss_conf 7678784101233235541
Q gi|254780481|r 4 TYNPSNIVRKRRCGFLARM 22 (44)
Q Consensus 4 TyQPs~~kRkr~HGF~~Rm 22 (44)
+--||+.-|.+--||..|.
T Consensus 39 a~i~SKklRN~IAGYvTrl 57 (62)
T d1rq6a_ 39 STVSTKHLRNKIAGYITRI 57 (62)
T ss_dssp CCCSSTTHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHH
T ss_conf 1388665767999899999
No 4
>d2b0la1 a.4.5.66 (A:167-257) GTP-sensing transcriptional pleiotropic repressor CodY, C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=1.10 E-value=4.3e+02 Score=9.52 Aligned_cols=5 Identities=80% Similarity=1.119 Sum_probs=0.0
Q ss_pred CCCCC
Q ss_conf 98876
Q gi|254780481|r 1 MKRTY 5 (44)
Q Consensus 1 mKrTy 5 (44)
||-||
T Consensus 71 MKGTy 75 (91)
T d2b0la1 71 MKGTY 75 (91)
T ss_dssp SSCEE
T ss_pred CCEEE
T ss_conf 77056
No 5
>d1ewqa1 a.113.1.1 (A:267-541) DNA repair protein MutS, domain III {Thermus aquaticus [TaxId: 271]}
Probab=1.09 E-value=4.3e+02 Score=9.51 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHHCCHHHHHHHHHHHH
Q ss_conf 323554159777999999997
Q gi|254780481|r 16 CGFLARMSTRSGIRILNRRRS 36 (44)
Q Consensus 16 HGF~~Rm~T~~GRkvL~rRr~ 36 (44)
.+++-+-.|+.|++.|.....
T Consensus 7 ~~~ln~t~T~~GkRlLr~wl~ 27 (275)
T d1ewqa1 7 FSVLDETRTAPGRRLLQSWLR 27 (275)
T ss_dssp HHHHCCCSSHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHH
T ss_conf 999767989189999999986
No 6
>d1f45b_ a.26.1.1 (B:) Heterodimeric interleukin-12 alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.02 E-value=4.7e+02 Score=9.36 Aligned_cols=11 Identities=27% Similarity=0.208 Sum_probs=0.0
Q ss_pred HHHHHHHCCHH
Q ss_conf 32355415977
Q gi|254780481|r 16 CGFLARMSTRS 26 (44)
Q Consensus 16 HGF~~Rm~T~~ 26 (44)
|||.-|.-|.+
T Consensus 159 haF~iR~VTIn 169 (178)
T d1f45b_ 159 HAFRIRAVTID 169 (178)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHEEEEEEHH
T ss_conf 63111446399
No 7
>d2zjru1 d.325.1.1 (U:8-79) Ribosomal protein L28 (L28p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=1.01 E-value=4.7e+02 Score=9.32 Aligned_cols=7 Identities=29% Similarity=0.368 Sum_probs=0.0
Q ss_pred CCCCCCC
Q ss_conf 8876787
Q gi|254780481|r 2 KRTYNPS 8 (44)
Q Consensus 2 KrTyQPs 8 (44)
||+|.|+
T Consensus 32 kR~f~PN 38 (72)
T d2zjru1 32 KRVQRAN 38 (72)
T ss_dssp CCCCCCC
T ss_pred CCEECCC
T ss_conf 7466353
No 8
>d2gych1 c.21.1.1 (H:1-140) Ribosomal protein L13 {Escherichia coli [TaxId: 562]}
Probab=0.98 E-value=4.9e+02 Score=9.25 Aligned_cols=8 Identities=38% Similarity=0.630 Sum_probs=0.0
Q ss_pred CCCCCCCCC
Q ss_conf 988767878
Q gi|254780481|r 1 MKRTYNPSN 9 (44)
Q Consensus 1 mKrTyQPs~ 9 (44)
|| ||.|+.
T Consensus 1 Mk-t~~~k~ 8 (140)
T d2gych1 1 MK-TFTAKP 8 (140)
T ss_dssp CC-CCCSSS
T ss_pred CC-CCCCCH
T ss_conf 97-625885
No 9
>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=0.92 E-value=2.4e+02 Score=10.66 Aligned_cols=14 Identities=21% Similarity=0.370 Sum_probs=0.0
Q ss_pred HHHHHHHHCCHHHH
Q ss_conf 33235541597779
Q gi|254780481|r 15 RCGFLARMSTRSGI 28 (44)
Q Consensus 15 ~HGF~~Rm~T~~GR 28 (44)
+.||+.+.-+.+||
T Consensus 51 ~~G~l~~~h~s~Gr 64 (87)
T d1stza1 51 YLGYIYQPHTSAGR 64 (87)
T ss_dssp HTTSEECCSSCSCB
T ss_pred HCCCCCCCCCCCCC
T ss_conf 87862488877877
No 10
>d1kn6a_ d.58.3.3 (A:) Prohormone convertase 1 pro-domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=0.91 E-value=5.4e+02 Score=9.07 Aligned_cols=6 Identities=17% Similarity=0.589 Sum_probs=0.0
Q ss_pred HHHHHH
Q ss_conf 123323
Q gi|254780481|r 13 KRRCGF 18 (44)
Q Consensus 13 kr~HGF 18 (44)
+++|||
T Consensus 20 A~~~Gf 25 (73)
T d1kn6a_ 20 AEELGY 25 (73)
T ss_dssp HHHHTC
T ss_pred HHHHCC
T ss_conf 998098
Done!