HHsearch alignment for GI: 254780482 and conserved domain: COG0594
>COG0594 RnpA RNase P protein component [Translation, ribosomal structure and biogenesis].
Probab=99.94 E-value=4.3e-26 Score=164.57 Aligned_cols=108 Identities=41% Similarity=0.585 Sum_probs=92.8
Q ss_pred CCCEEECCCHHHHHHHHH-CCCCCCCC-EEEEEEECCCCCCCCEEEEEEEC-CCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 986132489899999970-98513685-79999966876677379999607-8775124366899999999997542134
Q gi|254780482|r 1 MSNICILKKRRQFALVKK-GELRKGPF-FSLEVLNNNNSNLLPRVGFTVTK-KQGCAVERNRMRRRLKEAVRLCAEGVLK 77 (123)
Q Consensus 1 m~~~~rLk~~~dF~~v~k-g~~~~~~~-~~i~~~~~~~~~~~~R~G~~vsK-Kvg~AV~RNriKR~lRe~~R~~~~~~~~ 77 (123)
T Consensus 1 ~~k~~RLk~~~eF~~V~k~g~~~~~~~~~v~~~--~~~~~~~~RiGlsVsKkk~~~AV~RNRiKR~iRe~~r~-~~~~-~ 76 (117)
T COG0594 1 FKKELRLKKRKEFQAVFKKGKRRRNSLFFVLYG--RNNGLDHPRIGLTVSKKKVGNAVERNRIKRLIREAFRL-LQHL-L 76 (117)
T ss_pred CCHHHHCCCHHHHHHHHHCCCEEECCCEEEEEE--CCCCCCCCEEEEEEECHHCCCHHHHHHHHHHHHHHHHH-HHHH-C
T ss_conf 954443368899999996586241786699996--68899985699999860024124678999999999996-2531-8
Q ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 88339998572003799899999999999998644
Q gi|254780482|r 78 HGHDYVLIAKRDALFIPFKELCNHFVERVRRNKRS 112 (123)
Q Consensus 78 ~~~d~Viiar~~~~~~~~~~l~~~l~~~l~k~~~~ 112 (123)
T Consensus 77 ~~~d~Viiar~~~~~~~~~~l~~~L~~~l~~~~~~ 111 (117)
T COG0594 77 PGFDIVIIARKGFLELDFSELEKELSQLLKRAKRL 111 (117)
T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 98609999778867779899999999999861403