Query gi|254780482|ref|YP_003064895.1| ribonuclease P [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 123
No_of_seqs 120 out of 1136
Neff 7.2
Searched_HMMs 33803
Date Wed Jun 1 13:16:38 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780482.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >1a6f_A RNAse P protein, ribon 100.0 6.4E-30 1.9E-34 185.4 12.5 113 1-116 4-117 (119)
2 >1d6t_A Ribonuclease P, RNAse 100.0 1.8E-29 5.4E-34 182.9 9.4 112 1-115 3-115 (117)
3 >1nz0_A Ribonuclease P protein 100.0 4.3E-29 1.3E-33 180.8 7.5 110 1-113 6-116 (118)
4 >2bx2_L Ribonuclease E, RNAse 76.8 5.2 0.00015 19.8 5.4 65 42-117 16-80 (82)
5 >1w1z_A Delta-aminolevulinic a 22.2 54 0.0016 14.1 3.8 37 65-106 202-238 (297)
6 >1h7n_A 5-aminolaevulinic acid 20.9 58 0.0017 14.0 3.9 37 65-106 208-244 (307)
7 >1tke_A Threonyl-tRNA syntheta 20.1 60 0.0018 13.9 2.9 57 52-108 4-67 (98)
8 >1w5q_A Delta-aminolevulinic a 18.5 66 0.0019 13.7 4.4 37 65-106 207-243 (304)
9 >1l6s_A Porphobilinogen syntha 15.2 80 0.0024 13.2 2.9 33 65-102 201-233 (298)
10 >1pv8_A Delta-aminolevulinic a 15.0 81 0.0024 13.2 3.6 36 65-105 207-242 (305)
No 1
>>1a6f_A RNAse P protein, ribonuclease P protein; endonuclease, subunit; 2.60A {Bacillus subtilis} (A:)
Probab=99.97 E-value=6.4e-30 Score=185.39 Aligned_cols=113 Identities=29% Similarity=0.365 Sum_probs=102.8
Q ss_pred CCCEEECCCHHHHHHHHH-CCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 986132489899999970-9851368579999966876677379999607877512436689999999999754213488
Q gi|254780482|r 1 MSNICILKKRRQFALVKK-GELRKGPFFSLEVLNNNNSNLLPRVGFTVTKKQGCAVERNRMRRRLKEAVRLCAEGVLKHG 79 (123)
Q Consensus 1 m~~~~rLk~~~dF~~v~k-g~~~~~~~~~i~~~~~~~~~~~~R~G~~vsKKvg~AV~RNriKR~lRe~~R~~~~~~~~~~ 79 (123)
|++.+||+++.||+.|++ |+++.+++++++++++++. +++|+||+||||+|+||+||++||++||++|++.+.+ +|
T Consensus 4 ~~k~~rLk~~~eF~~v~~~g~~~~~~~~~l~~~~~~~~-~~~R~gi~vsKKvg~AV~RNriKR~lRe~~R~~~~~l--~~ 80 (119)
T 1a6f_A 4 LKKRNRLKKNEDFQKVFKHGTSVANRQFVLYTLDQPEN-DELRVGLSVSKKIGNAVMRNRIKRLIRQAFLEEKERL--KE 80 (119)
T ss_dssp CCGGGBCCSHHHHHHHHHHSEEEECSSEEEEECCCTTC-SSCEEEEEECSTTCCHHHHHHHHHHHHHHHHHHTTTB--CS
T ss_pred CCHHHHCCCHHHHHHHHHCCCEEECCCEEEEEECCCCC-CCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCC--CC
T ss_conf 85110179989999999859687489789999738989-9826999993102556888999999999999864128--99
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 3399985720037998999999999999986441043
Q gi|254780482|r 80 HDYVLIAKRDALFIPFKELCNHFVERVRRNKRSYYSG 116 (123)
Q Consensus 80 ~d~Viiar~~~~~~~~~~l~~~l~~~l~k~~~~~~~~ 116 (123)
+||||++++++.+++|+++.++|..+|.++.....+.
T Consensus 81 ~d~v~i~r~~~~~~~~~~l~~~l~~ll~k~~~~~~~~ 117 (119)
T 1a6f_A 81 KDYIIIARKPASQLTYEETKKSLQHLFRKSSLYKKSS 117 (119)
T ss_dssp SEEEEEECGGGTTCCHHHHHHHHHHHHHHTTCBC---
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 7499996687676999999999999999824231157
No 2
>>1d6t_A Ribonuclease P, RNAse P protein; endonuclease, subunit; NMR {Staphylococcus aureus} (A:)
Probab=99.96 E-value=1.8e-29 Score=182.89 Aligned_cols=112 Identities=23% Similarity=0.296 Sum_probs=101.5
Q ss_pred CCCEEECCCHHHHHHHHH-CCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 986132489899999970-9851368579999966876677379999607877512436689999999999754213488
Q gi|254780482|r 1 MSNICILKKRRQFALVKK-GELRKGPFFSLEVLNNNNSNLLPRVGFTVTKKQGCAVERNRMRRRLKEAVRLCAEGVLKHG 79 (123)
Q Consensus 1 m~~~~rLk~~~dF~~v~k-g~~~~~~~~~i~~~~~~~~~~~~R~G~~vsKKvg~AV~RNriKR~lRe~~R~~~~~~~~~~ 79 (123)
|++..||++++||+.|++ |+++.+++++++++++++ .+++|+||+||||+|+||+||++||++||++|++.+.+ +|
T Consensus 3 ~~k~~rLk~~~eF~~v~~~g~~~~~~~~~l~~~~~~~-~~~~Rvgi~vsKKvg~AV~RNriKR~lRe~~R~~~~~l--~~ 79 (117)
T 1d6t_A 3 LEKAYRIKKNADFQRIYKKGHSVANRQFVVYTCNNKE-IDHFRLGISVSKKLGNAVLRNKIKRAIRENFKVHKSHI--LA 79 (117)
T ss_dssp CCGGGBCCSSHHHHHHHHHCEECCSSSEECEECSTTC-CSSCCEEEECCSSSCSTTHHHHHHHHHHHHHHHGGGTC--CS
T ss_pred CCHHHHCCCHHHHHHHHHCCCEEECCCEEEEEECCCC-CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCC--CC
T ss_conf 8646564898999999986987758978999971898-88856999993356554788999999999999710248--99
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 339998572003799899999999999998644104
Q gi|254780482|r 80 HDYVLIAKRDALFIPFKELCNHFVERVRRNKRSYYS 115 (123)
Q Consensus 80 ~d~Viiar~~~~~~~~~~l~~~l~~~l~k~~~~~~~ 115 (123)
+||||++++++.+++|+++.+||..+|.++......
T Consensus 80 ~d~vii~~~~~~~~~~~~l~~~l~~ll~k~~~~~~~ 115 (117)
T 1d6t_A 80 KDIIVIARQPAKDMTTLQIQNSLEHVLKIAKVFNKK 115 (117)
T ss_dssp SCEEEEECSGGGGCCTTHHHHHHTTHHHHHTCSSSC
T ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 649999757756599999999999999997666641
No 3
>>1nz0_A Ribonuclease P protein component; endonuclease, RNAse, ALFA-beta sandwich, dimer, structural genomics, BSGC structure funded by NIH; HET: MSE; 1.20A {Thermotoga maritima} (A:)
Probab=99.96 E-value=4.3e-29 Score=180.79 Aligned_cols=110 Identities=23% Similarity=0.283 Sum_probs=101.0
Q ss_pred CCCEEECCCHHHHHHHHH-CCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 986132489899999970-9851368579999966876677379999607877512436689999999999754213488
Q gi|254780482|r 1 MSNICILKKRRQFALVKK-GELRKGPFFSLEVLNNNNSNLLPRVGFTVTKKQGCAVERNRMRRRLKEAVRLCAEGVLKHG 79 (123)
Q Consensus 1 m~~~~rLk~~~dF~~v~k-g~~~~~~~~~i~~~~~~~~~~~~R~G~~vsKKvg~AV~RNriKR~lRe~~R~~~~~~~~~~ 79 (123)
|++.+||+++.||+.|++ |.++.++++++++.+++. +++|+||+||||+|+||+||++||++||+||.+.+.+ ++|
T Consensus 6 l~k~~rLk~~~eF~~v~~~g~~~~~~~~~l~~~~~~~--~~~R~g~~vsKKvg~AV~RNriKR~lRe~~R~~~~~l-~~~ 82 (118)
T 1nz0_A 6 FTRRERLRLRRDFLLIFKEGKSLQNEYFVVLFRKNGX--DYSRLGIVVKRKFGKATRRNKLKRWVREIFRRNKGVI-PKG 82 (118)
T ss_dssp ----CCCCHHHHHHHHHHHSEEEECSSEEEEEEECSS--SSCEEEECCCGGGCSHHHHHHHHHHHHHHHHHHTTTS-CSS
T ss_pred CCHHHHCCCHHHHHHHHHCCCEEECCCEEEEEECCCC--CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHC-CCC
T ss_conf 8877767788999999984978868978999980899--9856999981545550578999999999999877517-888
Q ss_pred CEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 3399985720037998999999999999986441
Q gi|254780482|r 80 HDYVLIAKRDALFIPFKELCNHFVERVRRNKRSY 113 (123)
Q Consensus 80 ~d~Viiar~~~~~~~~~~l~~~l~~~l~k~~~~~ 113 (123)
+|||+++++++.+++|.+|.++|..+|.++.+..
T Consensus 83 ~d~vii~~~~~~~~~~~~l~~~l~~~l~k~~~~~ 116 (118)
T 1nz0_A 83 FDIVVIPRKKLSEEFERVDFWTVREKLLNLLKRI 116 (118)
T ss_dssp EEEEEEECHHHHHHGGGSCHHHHHHHHHHHHTTC
T ss_pred CEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 8799996432011331045999999999999983
No 4
>>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A (L:127-208)
Probab=76.77 E-value=5.2 Score=19.75 Aligned_cols=65 Identities=14% Similarity=0.063 Sum_probs=42.4
Q ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 7999960787751243668999999999975421348833999857200379989999999999999864410434
Q gi|254780482|r 42 RVGFTVTKKQGCAVERNRMRRRLKEAVRLCAEGVLKHGHDYVLIAKRDALFIPFKELCNHFVERVRRNKRSYYSGK 117 (123)
Q Consensus 42 R~G~~vsKKvg~AV~RNriKR~lRe~~R~~~~~~~~~~~d~Viiar~~~~~~~~~~l~~~l~~~l~k~~~~~~~~~ 117 (123)
.+|+ +|||+...-.|.+.+ .+ ...+.+.+ +=+|.|..+.+++.++|.+|+..+...-........
T Consensus 16 ~ig~-iSrkI~d~~~r~~l~----~l----~~~~~~~~--~G~IiRT~A~~a~~e~i~~e~~~L~~~w~~I~~~~~ 80 (82)
T 2bx2_L 16 RAGG-ISRRIEGDDRTELKE----AL----ASLELPEG--MGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAE 80 (82)
T ss_dssp TCCE-ECTTCC------HHH----HH----TTSCCCTT--CEEEECGGGGGCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCC-CCCCCCHHHHHHHHH----HH----HHHCCCCC--CEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6565-223357178999999----99----97258887--528986102488879999889998888898887764
No 5
>>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynthesis, heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} (A:32-328)
Probab=22.23 E-value=54 Score=14.12 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 999999754213488339998572003799899999999999
Q gi|254780482|r 65 KEAVRLCAEGVLKHGHDYVLIAKRDALFIPFKELCNHFVERV 106 (123)
Q Consensus 65 Re~~R~~~~~~~~~~~d~Viiar~~~~~~~~~~l~~~l~~~l 106 (123)
+|++|+...++ ..|.|+|++ ||+.. |-++..++...+
T Consensus 202 ~eAlre~~~D~-~EGAD~iMV-KPa~~---YLDii~~~k~~~ 238 (297)
T 1w1z_A 202 EEAMKEVELDI-VEGADIVMV-KPGLA---YLDIVWRTKERF 238 (297)
T ss_dssp HHHHHHHHHHH-HHTCSEEEE-ESCGG---GHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HCCCCEEEE-CCHHH---HHHHHHHHHHCC
T ss_conf 89999998778-719984985-22177---899999999705
No 6
>>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} (A:36-342)
Probab=20.86 E-value=58 Score=13.95 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 999999754213488339998572003799899999999999
Q gi|254780482|r 65 KEAVRLCAEGVLKHGHDYVLIAKRDALFIPFKELCNHFVERV 106 (123)
Q Consensus 65 Re~~R~~~~~~~~~~~d~Viiar~~~~~~~~~~l~~~l~~~l 106 (123)
+|++|+...++ ..|-|+|++ ||+.. |-++..++...+
T Consensus 208 ~eAlre~~~D~-~EGAD~iMV-KPal~---YLDii~~~k~~~ 244 (307)
T 1h7n_A 208 GLARRALERDM-SEGADGIIV-KPSTF---YLDIMRDASEIC 244 (307)
T ss_dssp HHHHHHHHHHH-HTTCSEEEE-ESSGG---GHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HCCCCEEEE-CCCCH---HHHHHHHHHHHC
T ss_conf 99999999617-649976985-47723---899999999856
No 7
>>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} (A:64-130,A:194-224)
Probab=20.14 E-value=60 Score=13.87 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=40.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHH-------CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 751243668999999999975421-------348833999857200379989999999999999
Q gi|254780482|r 52 GCAVERNRMRRRLKEAVRLCAEGV-------LKHGHDYVLIAKRDALFIPFKELCNHFVERVRR 108 (123)
Q Consensus 52 g~AV~RNriKR~lRe~~R~~~~~~-------~~~~~d~Viiar~~~~~~~~~~l~~~l~~~l~k 108 (123)
|..+.|.-+-=+|=.++....++. +..|+.+-+.......+.++..|++.|..++++
T Consensus 4 G~~iyrrS~aflL~~Av~~l~p~~kl~v~~sl~~GfY~d~~~~~~iteedl~~Ie~~M~eiV~~ 67 (98)
T 1tke_A 4 GLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGFYYDVDLDRTLTQEDVEALEKRMHELAEK 67 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCEECCCCEETTEEEEEEECSSCCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999997488834655112342469998505779889999999999998640
No 8
>>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A* (A:34-337)
Probab=18.50 E-value=66 Score=13.66 Aligned_cols=37 Identities=19% Similarity=0.365 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
Q ss_conf 999999754213488339998572003799899999999999
Q gi|254780482|r 65 KEAVRLCAEGVLKHGHDYVLIAKRDALFIPFKELCNHFVERV 106 (123)
Q Consensus 65 Re~~R~~~~~~~~~~~d~Viiar~~~~~~~~~~l~~~l~~~l 106 (123)
+|++|+...++ ..|.|+|++ ||+.. |-++..++...+
T Consensus 207 ~eAlre~~~Di-~EGAD~iMV-KPal~---YLDii~~~k~~~ 243 (304)
T 1w5q_A 207 DEALHEVAADL-AEGADMVMV-KPGMP---YLDIVRRVKDEF 243 (304)
T ss_dssp HHHHHHHHHHH-HTTCSEEEE-ESCGG---GHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HCCCCEEEE-ECHHH---HHHHHHHHHHCC
T ss_conf 99999999988-658876885-02046---779999999756
No 9
>>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} (A:26-323)
Probab=15.21 E-value=80 Score=13.19 Aligned_cols=33 Identities=18% Similarity=0.395 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHH
Q ss_conf 99999975421348833999857200379989999999
Q gi|254780482|r 65 KEAVRLCAEGVLKHGHDYVLIAKRDALFIPFKELCNHF 102 (123)
Q Consensus 65 Re~~R~~~~~~~~~~~d~Viiar~~~~~~~~~~l~~~l 102 (123)
+|++|+...++ ..|.|+|++ ||+.. |-++..++
T Consensus 201 ~eAlre~~~D~-~EGAD~vMV-KPal~---YLDIi~~~ 233 (298)
T 1l6s_A 201 REAIRESLLDE-AQGADCLMV-KPAGA---YLDIVREL 233 (298)
T ss_dssp HHHHHHHHHHH-HTTCSBEEE-ESCTT---CHHHHHHH
T ss_pred HHHHHHHHHHH-HCCCCEEEE-CCCHH---HHHHHHHH
T ss_conf 89999860314-429865884-04413---78899999
No 10
>>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reaction intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} (A:26-330)
Probab=14.98 E-value=81 Score=13.16 Aligned_cols=36 Identities=17% Similarity=0.380 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 99999975421348833999857200379989999999999
Q gi|254780482|r 65 KEAVRLCAEGVLKHGHDYVLIAKRDALFIPFKELCNHFVER 105 (123)
Q Consensus 65 Re~~R~~~~~~~~~~~d~Viiar~~~~~~~~~~l~~~l~~~ 105 (123)
+|++|+...++ ..|.|+|++ ||+.. |-++..++...
T Consensus 207 ~eAlre~~~D~-~EGAD~iMV-KPal~---YLDIi~~~k~~ 242 (305)
T 1pv8_A 207 GLALRAVDRDV-REGADMLMV-KPGMP---YLDIVREVKDK 242 (305)
T ss_dssp HHHHHHHHHHH-HTTCSBEEE-ESCGG---GHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HCCCCEEEE-CCCHH---HHHHHHHHHHH
T ss_conf 99999998637-549977885-35407---89999999974
Done!