HHSEARCH alignment of GI: 254780482 and SCOP domain: d1nz0a_

Alignment
>d1nz0a_ d.14.1.2 (A:) RNase P protein {Thermotoga maritima [TaxId: 2336]}
Probab=99.94  E-value=1.3e-27  Score=170.51  Aligned_cols=103  Identities=25%  Similarity=0.403  Sum_probs=91.1

Q ss_pred             EECCCHHHHHHHHH-CCCCCCCCEEEEEEECCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
Q ss_conf             32489899999970-98513685799999668766773799996078775124366899999999997542134883399
Q gi|254780482|r    5 CILKKRRQFALVKK-GELRKGPFFSLEVLNNNNSNLLPRVGFTVTKKQGCAVERNRMRRRLKEAVRLCAEGVLKHGHDYV   83 (123)
Q Consensus         5 ~rLk~~~dF~~v~k-g~~~~~~~~~i~~~~~~~~~~~~R~G~~vsKKvg~AV~RNriKR~lRe~~R~~~~~~~~~~~d~V   83 (123)
                      .||+++.||+.|++ |.++.++++++++.+++.  +.+|+||+||||+|+||.||++||+|||++|.+.+.+ ++|+|||
T Consensus         1 eRLk~~~dF~~v~~~g~~~~~~~~~l~~~~~~~--~~~R~G~~vsKKvg~AV~RNriKR~lRe~~r~~~~~l-~~~~div   77 (109)
T d1nz0a_           1 ERLRLRRDFLLIFKEGKSLQNEYFVVLFRKNGM--DYSRLGIVVKRKFGKATRRNKLKRWVREIFRRNKGVI-PKGFDIV   77 (109)
T ss_dssp             CCCCHHHHHHHHHHHSEEEECSSEEEEEEECSS--SSCEEEECCCGGGCSHHHHHHHHHHHHHHHHHHTTTS-CSSEEEE
T ss_pred             CCCCCHHHHHHHHHCCCEEECCCEEEEEECCCC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHC-CCCCEEE
T ss_conf             989988999999986988768978999983899--9857999991545158888899999999999978607-8987799


Q ss_pred             EEECCCC----CCCCHHHHHHHHHHHHHHHH
Q ss_conf             9857200----37998999999999999986
Q gi|254780482|r   84 LIAKRDA----LFIPFKELCNHFVERVRRNK  110 (123)
Q Consensus        84 iiar~~~----~~~~~~~l~~~l~~~l~k~~  110 (123)
                      +++++++    ...+|++|.++|..++++++
T Consensus        78 vi~r~~~~~~~~~~~~~~l~~~l~~l~kki~  108 (109)
T d1nz0a_          78 VIPRKKLSEEFERVDFWTVREKLLNLLKRIE  108 (109)
T ss_dssp             EEECHHHHHHGGGSCHHHHHHHHHHHHTTCC
T ss_pred             EEECCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             9972442212210449999999999999715


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: RNase P protein
domain: RNase P protein
species: Thermotoga maritima [TaxId: 2336]