RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780482|ref|YP_003064895.1| ribonuclease P [Candidatus
Liberibacter asiaticus str. psy62]
(123 letters)
>1a6f_A RNAse P protein, ribonuclease P protein; endonuclease,
subunit; 2.60A {Bacillus subtilis} (A:)
Length = 119
Score = 67.5 bits (165), Expect = 6e-13
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 4/112 (3%)
Query: 1 MSNICILKKRRQF-ALVKKGELRKGPFFSLEVLNNNNSNLLPRVGFTVTKKQGCAVERNR 59
+ LKK F + K G F L L+ ++ RVG +V+KK G AV RNR
Sbjct: 4 LKKRNRLKKNEDFQKVFKHGTSVANRQFVLYTLDQPENDE-LRVGLSVSKKIGNAVMRNR 62
Query: 60 MRRRLKEAVRLCAEGVLKHGHDYVLIAKRDALFIPFKELCNHFVERVRRNKR 111
++R +++A E + DY++IA++ A + ++E R++
Sbjct: 63 IKRLIRQAFLEEKERL--KEKDYIIIARKPASQLTYEETKKSLQHLFRKSSL 112
>1nz0_A Ribonuclease P protein component; endonuclease, RNAse,
ALFA-beta sandwich, dimer, structural genomics, BSGC
structure funded by NIH; HET: MSE; 1.20A {Thermotoga
maritima} (A:)
Length = 118
Score = 66.7 bits (163), Expect = 1e-12
Identities = 26/109 (23%), Positives = 49/109 (44%), Gaps = 4/109 (3%)
Query: 1 MSNICILKKRRQF-ALVKKGELRKGPFFSLEVLNNNNSNLLPRVGFTVTKKQGCAVERNR 59
+ L+ RR F + K+G+ + +F + N R+G V +K G A RN+
Sbjct: 6 FTRRERLRLRRDFLLIFKEGKSLQNEYFVVLFRKNGXDY--SRLGIVVKRKFGKATRRNK 63
Query: 60 MRRRLKEAVRLCAEGVLKHGHDYVLIAKRDALFIPFKELCNHFVERVRR 108
++R ++E R +GV+ G D V+I ++ + E++
Sbjct: 64 LKRWVREIFRRN-KGVIPKGFDIVVIPRKKLSEEFERVDFWTVREKLLN 111
>1d6t_A Ribonuclease P, RNAse P protein; endonuclease, subunit; NMR
{Staphylococcus aureus} (A:)
Length = 117
Score = 65.9 bits (161), Expect = 2e-12
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 4/112 (3%)
Query: 1 MSNICILKKRRQF-ALVKKGELRKGPFFSLEVLNNNNSNLLPRVGFTVTKKQGCAVERNR 59
+ +KK F + KKG F + NN + R+G +V+KK G AV RN+
Sbjct: 3 LEKAYRIKKNADFQRIYKKGHSVANRQFVVYTCNNKEIDH-FRLGISVSKKLGNAVLRNK 61
Query: 60 MRRRLKEAVRLCAEGVLKHGHDYVLIAKRDALFIPFKELCNHFVERVRRNKR 111
++R ++E ++ + D ++IA++ A + ++ N ++ K
Sbjct: 62 IKRAIRENFKVHKSHI--LAKDIIVIARQPAKDMTTLQIQNSLEHVLKIAKV 111
>3bij_A Uncharacterized protein GSU0716; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; 2.50A {Geobacter sulfurreducens pca} (A:)
Length = 285
Score = 27.9 bits (61), Expect = 0.43
Identities = 10/81 (12%), Positives = 20/81 (24%), Gaps = 11/81 (13%)
Query: 34 NNNSNLLPRVGFTVTKKQGCAVERNRMRRRLKEAVRLCAE-----------GVLKHGHDY 82
+ + + GF VT A R ++ + +A + + G
Sbjct: 34 EDXAAIAAERGFAVTTLXTKAATRAKVIDAIGKAAKALGKGDIFXLSYSGHGGQVPDTSN 93
Query: 83 VLIAKRDALFIPFKELCNHFV 103
D + F
Sbjct: 94 DEPDGVDETWCLFDGELIDDE 114
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase;
transferase, hyperthermophiles, ADP site, phosphoryl
group transfer; HET: ADP; 1.5A {Pyrococcus furiosus}
(A:1-124,A:169-314)
Length = 270
Score = 25.7 bits (56), Expect = 2.3
Identities = 7/71 (9%), Positives = 18/71 (25%)
Query: 39 LLPRVGFTVTKKQGCAVERNRMRRRLKEAVRLCAEGVLKHGHDYVLIAKRDALFIPFKEL 98
LL + A + + + + LK+ + K+ I +
Sbjct: 60 LLLHMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIV 119
Query: 99 CNHFVERVRRN 109
+ +
Sbjct: 120 DKNDPDPKGHV 130
>2rkh_A Putative APHA-like transcription factor; ZP_00208345.1,
structural genomics, joint center for structural
genomics, JCSG; 2.00A {Magnetospirillum magnetotacticum
ms-1} (A:1-99)
Length = 99
Score = 25.3 bits (55), Expect = 2.9
Identities = 14/42 (33%), Positives = 17/42 (40%), Gaps = 9/42 (21%)
Query: 65 KEAVRLCAEGVLKHGHDYVLIAKRDALFIPFKELCNHFVERV 106
KEAVRLCA G IA + + HF R+
Sbjct: 11 KEAVRLCALG---------TIASQPXRYSELAGSVRHFTSRI 43
>1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM
barrel, pyridoxal-5'-phosphate, selenomethionine, MAD,
structural genomics, PSI; HET: PLP; 2.00A
{Saccharomyces cerevisiae} (A:)
Length = 256
Score = 25.3 bits (54), Expect = 3.0
Identities = 2/36 (5%), Positives = 10/36 (27%), Gaps = 2/36 (5%)
Query: 54 AVERN--RMRRRLKEAVRLCAEGVLKHGHDYVLIAK 87
+ +R + + ++++K
Sbjct: 13 QLIAQYESVREVVNAEAKNVHVNENASKILLLVVSK 48
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, structural
genomics, joint center for structural genomics, JCSG;
1.91A {Haemophilus somnus 129PT} (A:)
Length = 237
Score = 25.0 bits (54), Expect = 4.0
Identities = 6/47 (12%), Positives = 16/47 (34%), Gaps = 4/47 (8%)
Query: 63 RLKEAVRLCAEGVLKHGHDYVLIAKRDALFIPFKELCNHFVERVRRN 109
+L E V +L++ + + D F + ++ +
Sbjct: 27 QLNEEVTT----LLENQINVLHFDIADGQFSSLFTVGAIGIKYFPTH 69
>1j6r_A Methionine synthase; structural genomics, TM0269, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 2.30A {Thermotoga maritima} (A:)
Length = 214
Score = 24.0 bits (52), Expect = 6.9
Identities = 2/24 (8%), Positives = 5/24 (20%)
Query: 97 ELCNHFVERVRRNKRSYYSGKNFS 120
+R + + S
Sbjct: 138 YALRKVDAELRMKRSNLEGSFRIS 161
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.326 0.139 0.412
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 950,370
Number of extensions: 40702
Number of successful extensions: 139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 15
Length of query: 123
Length of database: 4,956,049
Length adjustment: 73
Effective length of query: 50
Effective length of database: 2,488,284
Effective search space: 124414200
Effective search space used: 124414200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.4 bits)