RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780482|ref|YP_003064895.1| ribonuclease P [Candidatus
Liberibacter asiaticus str. psy62]
         (123 letters)



>1d6t_A Ribonuclease P, RNAse P protein; endonuclease, subunit; NMR
           {Staphylococcus aureus} SCOP: d.14.1.2
          Length = 117

 Score = 64.1 bits (156), Expect = 8e-12
 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 4/105 (3%)

Query: 7   LKKRRQFALV-KKGELRKGPFFSLEVLNNNNSNLLPRVGFTVTKKQGCAVERNRMRRRLK 65
           +KK   F  + KKG       F +   NN   +   R+G +V+KK G AV RN+++R ++
Sbjct: 9   IKKNADFQRIYKKGHSVANRQFVVYTCNNKEIDH-FRLGISVSKKLGNAVLRNKIKRAIR 67

Query: 66  EAVRLCAEGVLKHGHDYVLIAKRDALFIPFKELCNHFVERVRRNK 110
           E  ++    +L    D ++IA++ A  +   ++ N     ++  K
Sbjct: 68  ENFKVHKSHIL--AKDIIVIARQPAKDMTTLQIQNSLEHVLKIAK 110


>1a6f_A RNAse P protein, ribonuclease P protein; endonuclease, subunit;
           2.60A {Bacillus subtilis} SCOP: d.14.1.2
          Length = 119

 Score = 63.3 bits (154), Expect = 2e-11
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 4/105 (3%)

Query: 7   LKKRRQFALV-KKGELRKGPFFSLEVLNNNNSNLLPRVGFTVTKKQGCAVERNRMRRRLK 65
           LKK   F  V K G       F L  L+   ++   RVG +V+KK G AV RNR++R ++
Sbjct: 10  LKKNEDFQKVFKHGTSVANRQFVLYTLDQPENDE-LRVGLSVSKKIGNAVMRNRIKRLIR 68

Query: 66  EAVRLCAEGVLKHGHDYVLIAKRDALFIPFKELCNHFVERVRRNK 110
           +A     E +     DY++IA++ A  + ++E         R++ 
Sbjct: 69  QAFLEEKERL--KEKDYIIIARKPASQLTYEETKKSLQHLFRKSS 111


>1nz0_A Ribonuclease P protein component; endonuclease, RNAse, ALFA-beta
           sandwich, dimer, structural genomics, BSGC structure
           funded by NIH; HET: MSE; 1.20A {Thermotoga maritima}
           SCOP: d.14.1.2
          Length = 118

 Score = 61.4 bits (149), Expect = 6e-11
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 8/107 (7%)

Query: 7   LKKRRQFALV-KKGELRKGPFFSLEVLNNNNSNLLPRVGFTVTKKQGCAVERNRMRRRLK 65
           L+ RR F L+ K+G+  +  +F +    N       R+G  V +K G A  RN+++R ++
Sbjct: 12  LRLRRDFLLIFKEGKSLQNEYFVVLFRKNGMDY--SRLGIVVKRKFGKATRRNKLKRWVR 69

Query: 66  EAVRLCAEGVLKHGHDYVLIAKRDA----LFIPFKELCNHFVERVRR 108
           E  R   +GV+  G D V+I ++        + F  +    +  ++R
Sbjct: 70  EIFRR-NKGVIPKGFDIVVIPRKKLSEEFERVDFWTVREKLLNLLKR 115


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 28.7 bits (63), Expect = 0.36
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 18/66 (27%)

Query: 57  RNRMRRRLKEAVRL-CAEGVLKHGHDYVLIAKRDALFIPFKELCNHFVERVRRNK----- 110
           R   R+RL+E   L  A  V++   ++   AK+D      +E      E+V +NK     
Sbjct: 91  REEQRKRLQE---LDAASKVME--QEWREKAKKD-----LEEWNQRQSEQVEKNKINNRI 140

Query: 111 --RSYY 114
             +++Y
Sbjct: 141 ADKAFY 146


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.1 bits (56), Expect = 2.0
 Identities = 6/25 (24%), Positives = 15/25 (60%), Gaps = 8/25 (32%)

Query: 49 KKQGCAVERNRMRRRLKEAVRLCAE 73
          +KQ  A+      ++L+ +++L A+
Sbjct: 18 EKQ--AL------KKLQASLKLYAD 34


>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
           phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
           a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 2pf4_A 2iae_A
           2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
          Length = 588

 Score = 25.5 bits (54), Expect = 3.6
 Identities = 13/50 (26%), Positives = 19/50 (38%)

Query: 59  RMRRRLKEAVRLCAEGVLKHGHDYVLIAKRDALFIPFKELCNHFVERVRR 108
           R+        R  A G+    +  V  A +  L   F+ LC+     VRR
Sbjct: 133 RLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRR 182


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.326    0.139    0.412 

Gapped
Lambda     K      H
   0.267   0.0538    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,075,412
Number of extensions: 46141
Number of successful extensions: 180
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 14
Length of query: 123
Length of database: 5,693,230
Length adjustment: 81
Effective length of query: 42
Effective length of database: 3,729,466
Effective search space: 156637572
Effective search space used: 156637572
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.9 bits)