RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780482|ref|YP_003064895.1| ribonuclease P [Candidatus Liberibacter asiaticus str. psy62] (123 letters) >1d6t_A Ribonuclease P, RNAse P protein; endonuclease, subunit; NMR {Staphylococcus aureus} SCOP: d.14.1.2 Length = 117 Score = 64.1 bits (156), Expect = 8e-12 Identities = 28/105 (26%), Positives = 52/105 (49%), Gaps = 4/105 (3%) Query: 7 LKKRRQFALV-KKGELRKGPFFSLEVLNNNNSNLLPRVGFTVTKKQGCAVERNRMRRRLK 65 +KK F + KKG F + NN + R+G +V+KK G AV RN+++R ++ Sbjct: 9 IKKNADFQRIYKKGHSVANRQFVVYTCNNKEIDH-FRLGISVSKKLGNAVLRNKIKRAIR 67 Query: 66 EAVRLCAEGVLKHGHDYVLIAKRDALFIPFKELCNHFVERVRRNK 110 E ++ +L D ++IA++ A + ++ N ++ K Sbjct: 68 ENFKVHKSHIL--AKDIIVIARQPAKDMTTLQIQNSLEHVLKIAK 110 >1a6f_A RNAse P protein, ribonuclease P protein; endonuclease, subunit; 2.60A {Bacillus subtilis} SCOP: d.14.1.2 Length = 119 Score = 63.3 bits (154), Expect = 2e-11 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 4/105 (3%) Query: 7 LKKRRQFALV-KKGELRKGPFFSLEVLNNNNSNLLPRVGFTVTKKQGCAVERNRMRRRLK 65 LKK F V K G F L L+ ++ RVG +V+KK G AV RNR++R ++ Sbjct: 10 LKKNEDFQKVFKHGTSVANRQFVLYTLDQPENDE-LRVGLSVSKKIGNAVMRNRIKRLIR 68 Query: 66 EAVRLCAEGVLKHGHDYVLIAKRDALFIPFKELCNHFVERVRRNK 110 +A E + DY++IA++ A + ++E R++ Sbjct: 69 QAFLEEKERL--KEKDYIIIARKPASQLTYEETKKSLQHLFRKSS 111 >1nz0_A Ribonuclease P protein component; endonuclease, RNAse, ALFA-beta sandwich, dimer, structural genomics, BSGC structure funded by NIH; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.14.1.2 Length = 118 Score = 61.4 bits (149), Expect = 6e-11 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 8/107 (7%) Query: 7 LKKRRQFALV-KKGELRKGPFFSLEVLNNNNSNLLPRVGFTVTKKQGCAVERNRMRRRLK 65 L+ RR F L+ K+G+ + +F + N R+G V +K G A RN+++R ++ Sbjct: 12 LRLRRDFLLIFKEGKSLQNEYFVVLFRKNGMDY--SRLGIVVKRKFGKATRRNKLKRWVR 69 Query: 66 EAVRLCAEGVLKHGHDYVLIAKRDA----LFIPFKELCNHFVERVRR 108 E R +GV+ G D V+I ++ + F + + ++R Sbjct: 70 EIFRR-NKGVIPKGFDIVVIPRKKLSEEFERVDFWTVREKLLNLLKR 115 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 28.7 bits (63), Expect = 0.36 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 18/66 (27%) Query: 57 RNRMRRRLKEAVRL-CAEGVLKHGHDYVLIAKRDALFIPFKELCNHFVERVRRNK----- 110 R R+RL+E L A V++ ++ AK+D +E E+V +NK Sbjct: 91 REEQRKRLQE---LDAASKVME--QEWREKAKKD-----LEEWNQRQSEQVEKNKINNRI 140 Query: 111 --RSYY 114 +++Y Sbjct: 141 ADKAFY 146 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 26.1 bits (56), Expect = 2.0 Identities = 6/25 (24%), Positives = 15/25 (60%), Gaps = 8/25 (32%) Query: 49 KKQGCAVERNRMRRRLKEAVRLCAE 73 +KQ A+ ++L+ +++L A+ Sbjct: 18 EKQ--AL------KKLQASLKLYAD 34 >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 Score = 25.5 bits (54), Expect = 3.6 Identities = 13/50 (26%), Positives = 19/50 (38%) Query: 59 RMRRRLKEAVRLCAEGVLKHGHDYVLIAKRDALFIPFKELCNHFVERVRR 108 R+ R A G+ + V A + L F+ LC+ VRR Sbjct: 133 RLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRR 182 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.326 0.139 0.412 Gapped Lambda K H 0.267 0.0538 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,075,412 Number of extensions: 46141 Number of successful extensions: 180 Number of sequences better than 10.0: 1 Number of HSP's gapped: 177 Number of HSP's successfully gapped: 14 Length of query: 123 Length of database: 5,693,230 Length adjustment: 81 Effective length of query: 42 Effective length of database: 3,729,466 Effective search space: 156637572 Effective search space used: 156637572 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 51 (23.9 bits)