HHsearch alignment for GI: 254780483 and conserved domain: COG0706
>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion].
Probab=100.00 E-value=0 Score=568.11 Aligned_cols=291 Identities=40% Similarity=0.772 Sum_probs=263.4
Q ss_pred CCCEEEEEECEEEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCC--CEEEEEEEEEEECHHHHHHHHHHCCC
Q ss_conf 4635787311058999607898415899831676641022220244445788--60367899885000278876322014
Q gi|254780483|r 248 SNSWLGISDKYWASVFIPSKETSFHSQFKYLSDGHARYQAKFSANEITILPG--KSITTTNFLFAGAKEFPTIHHYEKDL 325 (581)
Q Consensus 248 ~~~Wva~~qkYF~salIP~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~pg--~~~~~~~~lY~GPk~~~~L~~~~~~l 325 (581)
T Consensus 4 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-- 78 (314)
T COG0706 4 LGGWLGILQLYFASLLIPRDFGRLEVPSPG---GTSRYQSGLKSKLRLVPPGMKASASTELLLLAGPKYVDDLSTSDP-- 78 (314)
T ss_pred CCCCHHHEECCCEEEECCCCCCCCCCCCCC---CCHHHHHHCCCCHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCC--
T ss_conf 331010100120354156654442213578---742566640340021044211366520355416765553000351--
Q ss_pred CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 631012333201103568999999998876320-1639999999999998889999999999988877888999997314
Q gi|254780483|r 326 AIPRFEMLIDWGWFYFIAKPMFMLMSYFYNLVG-NFGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFK 404 (581)
Q Consensus 326 ~~~~l~~~vd~Gwf~~i~kplf~~L~~l~~~i~-NyGiaIIllTilikli~~PLt~ks~~Sm~kM~~lqP~i~~i~ekyk 404 (581)
T Consensus 79 ----~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk 154 (314)
T COG0706 79 ----LDLTSDYGWFWNILAPLFPLLLFIDSFSGLNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYK 154 (314)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHC
T ss_conf ----1345567899999999999999888872520889999999999999840778886549999983788999998806
Q ss_pred -CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf -5115678999999985048786788999999999999999999876986288753410000335725666764102222
Q gi|254780483|r 405 -QSPPQVLQKAMIQLYKTHNINPLAGCWPILLQIPVFFAIYKVISISLEMRHAPFWGWIKDLAAADPTNIFTLFGILPFY 483 (581)
Q Consensus 405 -~d~~~~~~~e~m~ly~~~~vnP~~GClP~l~q~p~~~a~~~~~~~~ielr~~~f~~Wi~dls~~d~~~~~~~~~~~p~~ 483 (581)
T Consensus 155 ~~~~-~~~q~e~~~Lyk~~~vnPl~gclP~liQ~Pifialy~~l~~~~~l~~~~f~~w~~dl~~~dp~~~~--------- 224 (314)
T COG0706 155 GTDK-QKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRSTVELRGAPFLGWITDLSLPDPDYIL--------- 224 (314)
T ss_pred CCCH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHH---------
T ss_conf 5429-999999999999829992355678999999999999999960110344376665523678973446---------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 027899999999999999999752887----7468999999996899999998787999999999999999999999874
Q gi|254780483|r 484 LPGFMHVGIWPIIMSLSMFIQMKMSPP----PADKGQAMILNWMPVVFVFALSSFPAGLIIYWSWSNVISIVQQAVIMKM 559 (581)
Q Consensus 484 ~~~~~~~~ilp~l~~~~m~~~~k~~p~----~~d~~q~~~~~~mp~~~~~~~~~~~~gl~~y~~~~~~~~~~qq~~i~~~ 559 (581)
T Consensus 225 --------~~pii~gv~~f~q~~ls~~~~~~~q~~~~~~~~~impi~f~~~~~~~PaGL~LYW~~~n~fsi~Qq~ii~~~ 296 (314)
T COG0706 225 --------LLPILAGVTMFLQQKLSPRNLSTPQDPQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLFSILQQYILNKP 296 (314)
T ss_pred --------HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_conf --------999999999999999635357653579999999999999999998747899999997239999999999042
Q ss_pred CCCCCC
Q ss_conf 799834
Q gi|254780483|r 560 HGAEIG 565 (581)
Q Consensus 560 ~~~~~~ 565 (581)
T Consensus 297 ~~~~~~ 302 (314)
T COG0706 297 LEKKRT 302 (314)
T ss_pred CCHHHH
T ss_conf 210333