Query gi|254780483|ref|YP_003064896.1| putative inner membrane protein translocase component YidC [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 581
No_of_seqs 197 out of 1773
Neff 8.0
Searched_HMMs 39220
Date Sun May 29 17:33:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780483.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01318 putative inner membra 100.0 0 0 1153.1 58.0 546 1-563 1-563 (565)
2 PRK01001 putative inner membra 100.0 0 0 723.6 38.2 487 69-573 224-786 (791)
3 COG0706 YidC Preprotein transl 100.0 0 0 568.1 24.0 291 248-565 4-302 (314)
4 PRK00145 putative inner membra 100.0 0 0 483.3 26.0 204 338-562 1-217 (225)
5 PRK01622 OxaA-like protein pre 100.0 0 0 482.9 25.0 212 335-569 33-260 (266)
6 PRK02944 OxaA-like protein pre 100.0 0 0 479.3 25.9 202 336-558 33-242 (255)
7 PRK02463 OxaA-like protein pre 100.0 0 0 479.9 25.0 218 336-578 34-267 (307)
8 PRK02654 putative inner membra 100.0 0 0 480.2 23.1 241 334-577 1-358 (376)
9 PRK01315 putative inner membra 100.0 0 0 468.4 27.5 238 337-576 6-278 (325)
10 PRK03449 putative inner membra 100.0 0 0 467.0 26.0 230 339-569 2-279 (304)
11 TIGR03593 yidC_nterm membrane 100.0 0 0 450.0 32.5 349 4-358 1-366 (366)
12 PRK02201 putative inner membra 100.0 0 0 421.2 23.3 213 339-559 132-368 (392)
13 TIGR03592 yidC_oxa1_cterm memb 100.0 0 0 395.7 23.0 179 359-558 1-181 (181)
14 pfam02096 60KD_IMP 60Kd inner 100.0 0 0 367.3 23.3 182 358-560 1-193 (194)
15 PRK00247 putative inner membra 100.0 0 0 357.6 18.1 197 359-560 31-273 (422)
16 KOG1239 consensus 99.8 1.6E-18 4E-23 153.7 16.5 196 335-556 77-288 (372)
17 KOG1239 consensus 96.9 0.0018 4.6E-08 43.8 5.2 200 355-556 30-244 (372)
18 COG1422 Predicted membrane pro 96.8 0.017 4.2E-07 36.7 9.2 86 359-445 45-137 (201)
19 pfam01956 DUF106 Integral memb 95.5 0.21 5.3E-06 28.7 11.8 63 383-448 43-112 (168)
20 PRK11055 galM aldose 1-epimera 93.8 0.53 1.3E-05 25.8 14.0 122 67-198 14-174 (348)
21 pfam01263 Aldose_epim Aldose 1 92.4 0.8 2.1E-05 24.4 16.9 124 69-202 1-163 (301)
22 pfam00558 Vpu Vpu protein. The 92.3 0.83 2.1E-05 24.3 8.1 68 360-427 7-78 (81)
23 pfam07423 DUF1510 Protein of u 91.3 0.28 7.2E-06 27.7 3.9 29 6-34 17-45 (214)
24 pfam09973 DUF2208 Predicted me 89.1 1.6 4E-05 22.3 8.2 97 342-451 6-112 (232)
25 pfam06936 Selenoprotein_S Sele 84.9 2.6 6.7E-05 20.7 8.0 51 355-406 31-106 (190)
26 PRK09108 type III secretion sy 81.6 3.5 8.9E-05 19.8 6.9 39 362-405 190-228 (354)
27 TIGR01185 devC DevC protein; I 81.2 2.5 6.3E-05 20.8 4.0 48 332-381 296-346 (381)
28 cd02433 Nodulin-21_like_2 Nodu 80.0 3.9 0.0001 19.4 7.1 33 393-426 82-114 (234)
29 PRK01001 putative inner membra 79.1 0.48 1.2E-05 26.0 -0.2 140 368-535 575-745 (791)
30 pfam01988 VIT1 VIT family. Thi 76.9 4.8 0.00012 18.8 8.8 47 379-426 49-96 (210)
31 KOG1594 consensus 74.2 5.6 0.00014 18.3 9.3 123 69-198 24-165 (305)
32 PRK12721 secretion system appa 72.6 6.1 0.00015 18.0 6.3 16 374-389 200-215 (349)
33 COG1377 FlhB Flagellar biosynt 72.2 6.2 0.00016 18.0 6.9 50 351-405 184-233 (363)
34 PRK01294 lipase chaperone; Pro 71.6 5.9 0.00015 18.1 3.8 18 81-98 77-94 (339)
35 PRK13109 flhB flagellar biosyn 71.5 6.4 0.00016 17.8 6.5 31 369-404 204-234 (358)
36 PRK08156 surface presentation 71.3 6.4 0.00016 17.8 7.3 39 362-405 183-221 (367)
37 PRK12468 flhB flagellar biosyn 70.4 6.7 0.00017 17.7 6.4 30 371-405 204-233 (383)
38 PRK00191 tatA twin arginine tr 69.1 7.2 0.00018 17.5 6.0 65 357-427 3-72 (107)
39 pfam02936 COX4 Cytochrome c ox 66.3 5.4 0.00014 18.4 2.6 32 389-420 26-57 (143)
40 TIGR03513 GldL_gliding gliding 66.2 4.3 0.00011 19.1 2.2 26 349-378 3-28 (202)
41 pfam00606 Glycoprotein_B Herpe 63.9 8.9 0.00023 16.8 3.9 34 425-458 663-696 (711)
42 COG0676 Uncharacterized enzyme 63.8 8.9 0.00023 16.8 9.7 126 67-202 23-162 (287)
43 COG2976 Uncharacterized protei 62.0 7.5 0.00019 17.4 2.7 30 361-390 22-51 (207)
44 TIGR00380 cobD cobalamin biosy 60.4 9.7 0.00025 16.5 3.1 48 412-468 143-209 (322)
45 PTZ00243 ABC transporter; Prov 59.5 11 0.00027 16.3 13.7 10 397-406 1055-1064(1560)
46 KOG0209 consensus 58.3 9.1 0.00023 16.7 2.6 29 3-31 392-422 (1160)
47 pfam09095 DUF1926 Domain of un 58.2 11 0.00028 16.1 9.6 28 69-96 8-36 (275)
48 pfam05600 DUF773 Protein of un 57.6 11 0.00029 16.0 4.4 40 388-428 467-506 (506)
49 TIGR02120 GspF general secreti 55.9 12 0.00031 15.9 3.4 49 309-376 201-250 (414)
50 KOG2295 consensus 55.7 11 0.00027 16.2 2.6 59 392-457 475-537 (648)
51 cd00922 Cyt_c_Oxidase_IV Cytoc 55.3 9 0.00023 16.7 2.2 31 390-420 27-57 (136)
52 TIGR00328 flhB flagellar biosy 54.9 12 0.00032 15.7 7.3 13 462-474 169-181 (352)
53 PRK00575 tatA twin arginine tr 54.6 13 0.00032 15.7 5.0 47 358-406 5-53 (88)
54 PRK05702 flhB flagellar biosyn 53.8 13 0.00033 15.6 7.5 50 351-405 184-233 (352)
55 pfam07014 Hs1pro-1_C Hs1pro-1 53.5 7.5 0.00019 17.3 1.6 14 410-423 168-181 (261)
56 COG0646 MetH Methionine syntha 52.5 3.6 9.2E-05 19.7 -0.2 37 394-431 259-295 (311)
57 PRK13665 hypothetical protein; 52.2 12 0.00031 15.8 2.4 16 389-404 261-276 (327)
58 pfam11694 DUF3290 Protein of u 51.6 11 0.00027 16.3 2.1 22 66-87 107-128 (149)
59 PRK06298 type III secretion sy 51.3 14 0.00036 15.3 7.7 16 374-389 201-216 (360)
60 KOG4075 consensus 49.6 13 0.00033 15.6 2.3 34 387-420 49-82 (167)
61 TIGR00699 GABAtrns_euk 4-amino 47.7 12 0.00031 15.8 1.9 41 390-431 384-441 (469)
62 KOG3021 consensus 46.6 17 0.00042 14.8 3.2 37 390-426 170-210 (313)
63 KOG3958 consensus 45.9 17 0.00043 14.8 5.0 53 387-439 250-304 (371)
64 PTZ00234 variable surface prot 44.1 18 0.00046 14.6 3.1 13 526-538 377-389 (433)
65 pfam07748 Glyco_hydro_38C Glyc 42.9 19 0.00048 14.4 19.3 30 69-99 31-60 (379)
66 PRK10893 hypothetical protein; 42.7 19 0.00048 14.4 6.4 23 1-23 1-24 (190)
67 KOG4847 consensus 42.6 19 0.00048 14.4 3.5 39 390-434 360-398 (483)
68 PRK11462 putative transporter; 42.5 19 0.00048 14.4 4.8 30 547-576 415-444 (460)
69 pfam06045 Rhamnogal_lyase Rham 41.1 20 0.0005 14.3 8.4 30 67-96 6-35 (194)
70 PRK02919 oxaloacetate decarbox 41.0 20 0.00051 14.3 3.4 12 10-21 19-30 (82)
71 TIGR02830 spore_III_AG stage I 39.5 21 0.00053 14.1 3.5 26 7-32 5-30 (193)
72 KOG1604 consensus 37.7 22 0.00057 13.9 12.2 33 65-97 17-50 (353)
73 PRK06531 yajC preprotein trans 36.9 23 0.00058 13.8 2.1 14 70-83 62-75 (120)
74 PRK03411 consensus 34.9 17 0.00042 14.8 0.9 13 309-321 126-138 (194)
75 COG2017 GalM Galactose mutarot 34.9 24 0.00062 13.6 18.1 122 67-198 11-165 (308)
76 pfam09451 ATG27 Autophagy-rela 34.8 24 0.00061 13.7 1.7 13 333-345 194-206 (265)
77 TIGR00263 trpB tryptophan synt 32.6 26 0.00068 13.3 3.4 10 106-115 263-272 (412)
78 PRK03598 hypothetical protein; 32.6 27 0.00068 13.3 7.9 31 79-110 43-74 (331)
79 KOG2639 consensus 31.7 27 0.0007 13.2 6.9 79 385-468 423-506 (685)
80 KOG0904 consensus 30.9 27 0.00069 13.3 1.5 19 236-254 433-451 (1076)
81 pfam12127 YdfA_immunity SigmaW 30.5 28 0.00072 13.1 1.5 18 388-405 259-276 (321)
82 pfam05029 TIMELESS_C Timeless 30.4 29 0.00073 13.1 2.6 11 345-355 298-308 (507)
83 pfam11120 DUF2636 Protein of u 29.6 30 0.00075 13.0 4.1 28 364-391 6-33 (62)
84 TIGR03372 putres_am_tran putre 29.3 30 0.00076 13.0 1.8 19 387-405 354-372 (442)
85 PRK10340 ebgA cryptic beta-D-g 29.1 30 0.00077 12.9 15.7 31 66-96 721-751 (1030)
86 KOG3543 consensus 28.9 26 0.00067 13.4 1.1 22 446-468 816-837 (1218)
87 TIGR02026 BchE magnesium-proto 28.8 30 0.00078 12.9 1.8 27 395-425 317-343 (506)
88 pfam04912 Dynamitin Dynamitin. 28.7 31 0.00078 12.9 4.5 49 386-436 266-318 (387)
89 TIGR00934 2a38euk potassium up 28.4 31 0.00079 12.8 7.2 107 419-551 815-926 (1197)
90 pfam08216 DUF1716 Eukaryotic d 28.3 31 0.00079 12.8 3.7 15 396-411 42-56 (108)
91 COG4449 Predicted protease of 28.3 31 0.00079 12.8 2.3 23 244-266 275-302 (827)
92 PRK09738 small toxic polypepti 28.0 31 0.0008 12.8 2.7 20 360-382 10-29 (52)
93 pfam02411 MerT MerT mercuric t 27.7 32 0.00081 12.8 5.5 69 453-538 33-112 (116)
94 pfam03056 consensus 27.0 33 0.00083 12.7 8.3 56 356-421 151-207 (213)
95 PRK10476 multidrug resistance 26.5 33 0.00085 12.6 7.0 35 73-110 46-81 (348)
96 PRK12860 transcriptional activ 26.3 34 0.00085 12.6 2.9 18 415-432 40-58 (189)
97 PRK09953 wcaD putative colanic 25.8 34 0.00087 12.5 1.4 51 305-362 311-364 (405)
98 TIGR01726 HEQRo_perm_3TM amino 25.3 35 0.00089 12.5 1.9 12 523-534 55-66 (99)
99 COG3901 NosR Regulator of nitr 25.2 27 0.00069 13.3 0.7 18 80-98 98-115 (482)
100 cd00927 Cyt_c_Oxidase_VIc Cyto 25.1 35 0.0009 12.4 2.8 29 388-417 34-63 (70)
101 pfam10095 DUF2333 Uncharacteri 24.9 30 0.00076 12.9 0.8 22 13-35 25-46 (337)
102 PRK10189 hypothetical protein; 24.9 35 0.0009 12.4 2.5 29 537-565 446-477 (481)
103 pfam04284 DUF441 Protein of un 24.8 36 0.00091 12.4 3.0 34 350-383 38-71 (140)
104 pfam07745 Glyco_hydro_53 Glyco 24.8 20 0.00051 14.3 -0.1 66 388-464 213-297 (332)
105 TIGR01523 ATPase-IID_K-Na pota 24.7 31 0.00078 12.9 0.9 51 354-407 762-828 (1001)
106 pfam05280 FlhC Flagellar trans 24.5 36 0.00092 12.4 2.6 18 415-432 40-58 (176)
107 pfam07358 DUF1482 Protein of u 24.4 28 0.00072 13.2 0.6 12 420-433 34-45 (57)
108 pfam05462 Dicty_CAR Slime mold 23.9 37 0.00094 12.3 3.0 99 437-548 126-238 (305)
109 TIGR02951 DMSO_dmsB dimethylsu 23.7 29 0.00075 13.0 0.6 16 164-179 29-45 (162)
110 pfam10319 7TM_GPCR_Srj Serpent 23.6 37 0.00096 12.2 8.8 17 430-446 253-270 (310)
111 cd02985 TRX_CDSP32 TRX family, 23.5 38 0.00096 12.2 1.7 14 391-404 32-45 (103)
112 TIGR02794 tolA_full protein To 23.4 38 0.00096 12.2 4.1 21 7-27 4-27 (452)
113 pfam11037 Musclin Insulin-resi 22.8 21 0.00054 14.0 -0.3 22 68-89 65-90 (132)
114 pfam03273 Baculo_gp64 Baculovi 22.8 39 0.00099 12.1 2.0 41 330-374 462-502 (508)
115 KOG0190 consensus 22.3 40 0.001 12.1 1.8 19 389-407 399-417 (493)
116 COG1883 OadB Na+-transporting 22.2 40 0.001 12.1 1.3 37 363-399 151-187 (375)
117 PRK11103 mannose-specific PTS 22.2 40 0.001 12.0 15.0 13 491-503 236-248 (277)
118 KOG1517 consensus 22.1 40 0.001 12.0 2.6 154 412-574 453-651 (1387)
119 PRK12417 secY preprotein trans 22.0 40 0.001 12.0 6.3 14 419-433 227-240 (399)
120 PRK13703 conjugal pilus assemb 21.9 40 0.001 12.0 1.9 26 5-31 2-33 (247)
121 COG3976 Uncharacterized protei 21.9 40 0.001 12.0 3.3 26 75-100 61-86 (135)
122 COG3031 PulC Type II secretory 21.7 41 0.001 12.0 1.0 16 9-24 21-36 (275)
123 pfam05934 MCLC Mid-1-related c 21.5 35 0.0009 12.4 0.6 13 430-442 349-361 (577)
124 COG4814 Uncharacterized protei 21.0 42 0.0011 11.9 5.6 50 71-127 72-122 (288)
125 KOG0637 consensus 20.8 42 0.0011 11.9 6.1 69 365-449 285-353 (498)
126 COG0499 SAM1 S-adenosylhomocys 20.6 30 0.00077 12.9 0.2 14 85-98 127-140 (420)
127 pfam04744 Monooxygenase_B Mono 20.5 43 0.0011 11.8 6.8 26 295-320 320-345 (381)
128 pfam05829 Adeno_PX Adenovirus 20.4 36 0.00091 12.4 0.5 14 428-443 14-27 (44)
129 PRK12722 transcriptional activ 20.4 43 0.0011 11.8 5.2 36 413-448 38-84 (185)
No 1
>PRK01318 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=0 Score=1153.11 Aligned_cols=546 Identities=38% Similarity=0.712 Sum_probs=474.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC------------CCCCCCCCCCCHHCCCCC
Q ss_conf 97327899999999999999975137898876544333334456776677------------555666667610001458
Q gi|254780483|r 1 MERNWNYFVAIALSVIIVYAWQNFYVYPRIEEMNNERKNIQTVKQPNQVD------------NSYAAVLIDDRAQALSMS 68 (581)
Q Consensus 1 Md~nKn~iIai~Ls~~ill~w~~~~~~p~~e~~~~~~~~~~s~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 68 (581)
|| +||++||++||++++++|++|+.+|++++..++++.++........+ .+...............+
T Consensus 1 Md-~Kn~lLaivLs~~vL~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (565)
T PRK01318 1 MD-NKRLILAIALSFVVLLGWQYFFPDPNPQKQEQAAAAQAAQQQAAQAAAPAAQQATQTTTAAAAAAAAAAVPAAAAAS 79 (565)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 94-68899999999999999999738988985300112210245567776666777776665555555554432224677
Q ss_pred CEEEEECCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 72899766499999769955999995357134478877268854566655310000013478775433343210015666
Q gi|254780483|r 69 PRVELKNPSLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTKNAYFAELDYVSTANNIELPNSNTVWNLISGK 148 (581)
Q Consensus 69 ~~I~Iend~l~i~is~~GG~I~~~~LK~Y~~~~~~ds~~v~Ll~~~~~~~~y~~~~G~~~~~~~~~~p~~~~~~~~~~~~ 148 (581)
++|+||||+++++||++||+|+++.||+|+++.+++++ +.|++++++.+.|++++||+..+ +...|++++.|+.....
T Consensus 80 ~~I~Ietd~l~~sIs~~GG~I~~~~LK~Yk~~~~~~~p-v~Ll~~~~~~~~y~a~~G~~~~~-~~~~~~~~~~~~~~~~~ 157 (565)
T PRK01318 80 QRITVETDVLELSIDTKGGRIDDLLLKKYKETLDSDSP-VVLLSPSGSPFVYFAESGLVGAD-GPDVPGGRTLWTADKSS 157 (565)
T ss_pred CEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCC-EEEECCCCCCCCEEEEEECCCCC-CCCCCCCCCCEEECCCC
T ss_conf 55999868499999889975737752678564379997-39948888876027763023688-87778888516845870
Q ss_pred CC---CCCCCCEEEEECCCCEEEEEEEEECC-CCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECC
Q ss_conf 56---66665047741588426999997168-835899986315766642224210120256865444200110000015
Q gi|254780483|r 149 IL---TPTTPIKLVFKNANNILFERTISLDE-HYLFKIVDTVTNNSIDQIRFSPRGRIMRHKPQTATNTFGVQEGFIAVL 224 (581)
Q Consensus 149 ~l---~~~~~v~l~~~~~~g~~i~kt~t~~~-~Y~i~i~~~v~N~s~~~i~~~~~~~i~r~~~~~~~~~~~~~~g~~~~~ 224 (581)
.. .++.+++|+|++++|++++|+|+|++ +|+++++++|+|.|+.++.+.+|+++.|+..+........|+|+++++
T Consensus 158 ~~~~~~~~~~vtl~~~~~~G~~v~K~ytf~~d~Y~i~v~~~v~N~s~~~~~l~~y~~i~r~~~~~~~~~~~~~~G~~~~~ 237 (565)
T PRK01318 158 LLLAEQNELPVTLTWTNDNGVTFTKTYTLDRGDYMFTVEQSVNNNGGAPVNLSPYGQLKRRPSTDTGSSNFTFLGAAGYT 237 (565)
T ss_pred EECCCCCCEEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEEE
T ss_conf 23268885279999987998799999998589558999999964788752021015764178887556643543347994
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECEEEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCEEEE
Q ss_conf 65432100133333332223323463578731105899960789841589983167664102222024444578860367
Q gi|254780483|r 225 GDKSLVEQKYSDIEKSSISNFHESNSWLGISDKYWASVFIPSKETSFHSQFKYLSDGHARYQAKFSANEITILPGKSITT 304 (581)
Q Consensus 225 ~d~~~~~~~~~d~~~~~~~~~~~~~~Wva~~qkYF~salIP~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~pg~~~~~ 304 (581)
+|+++++++++|+++++..+.+++.||+|++||||++||||+++.......... +..+.|.+++..+...++||++.+.
T Consensus 238 ~~~~~~k~~~~d~~~~~~~~~~~~~gWvg~~qkYF~salIP~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~pg~~~~~ 316 (565)
T PRK01318 238 DDEKYKKYSYKDIDDKENLNIKSKGGWVAILDKYFATALIPDNQGTNNFYSANL-GNAGLYQVGFKSPPVTVAPGQTAST 316 (565)
T ss_pred CCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCEEEEEEECCCCCCCEEEEEEC-CCCCCEEEEEECCCEEECCCCCEEE
T ss_conf 687437842343221466554577658998131489999658987504897422-8887158987446323279971468
Q ss_pred EEEEEEECHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89988500027887632201463101233320110356899999999887632016399999999999988899999999
Q gi|254780483|r 305 TNFLFAGAKEFPTIHHYEKDLAIPRFEMLIDWGWFYFIAKPMFMLMSYFYNLVGNFGIAIMLTTVFVKLLFFPLAKKQYV 384 (581)
Q Consensus 305 ~~~lY~GPk~~~~L~~~~~~l~~~~l~~~vd~Gwf~~i~kplf~~L~~l~~~i~NyGiaIIllTilikli~~PLt~ks~~ 384 (581)
++++|+|||+|++|+++.. ++||++||||||+|++|||||+|+|+|+++||||||||||||+||+++||||+|||+
T Consensus 317 ~~~ly~GPK~~~~L~~~~~----~~Le~~Vd~Gw~~~i~kplf~lL~~l~~~igN~G~aIIllTilIKl~~~PLt~ksy~ 392 (565)
T PRK01318 317 TARLYAGPKEVKLLDKYIA----PGLDLAVDYGWFWFITKPLFWLLDFLHSFIGNWGWAIILLTIIVKLLLFPLTYKSYR 392 (565)
T ss_pred EEEEEECHHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8899975078999875152----036672004179999999999999987761747699999999999999988999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99988877888999997314511567899999998504878678899999999999999999987698628875341000
Q gi|254780483|r 385 STANMKNIQPKIDELREKFKQSPPQVLQKAMIQLYKTHNINPLAGCWPILLQIPVFFAIYKVISISLEMRHAPFWGWIKD 464 (581)
Q Consensus 385 Sm~kM~~lqP~i~~i~ekyk~d~~~~~~~e~m~ly~~~~vnP~~GClP~l~q~p~~~a~~~~~~~~ielr~~~f~~Wi~d 464 (581)
||||||+|||||+|||||||||+ ||+|||||+|||||||||||||||||+|||||||||+||+++|||||+||+|||+|
T Consensus 393 Sm~kM~~lqP~~~~~~~~~~~d~-~~~~~~~m~ly~~~~~np~~gclp~l~q~p~~~~~~~~~~~~~~~r~~~f~~Wi~d 471 (565)
T PRK01318 393 SMAKMKELQPKMQELKEKYKDDP-QKMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIELRHAPFIGWIHD 471 (565)
T ss_pred HHHHHHHHCHHHHHHHHHHCCCH-HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECC
T ss_conf 99998754567999998715886-79999999999981998224568999999999999999998898637962010132
Q ss_pred CCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 03357256667641022220278999999999999999997528877-46899999999689999999878799999999
Q gi|254780483|r 465 LAAADPTNIFTLFGILPFYLPGFMHVGIWPIIMSLSMFIQMKMSPPP-ADKGQAMILNWMPVVFVFALSSFPAGLIIYWS 543 (581)
Q Consensus 465 ls~~d~~~~~~~~~~~p~~~~~~~~~~ilp~l~~~~m~~~~k~~p~~-~d~~q~~~~~~mp~~~~~~~~~~~~gl~~y~~ 543 (581)
||+|||+++++++ ++ .|++|||||||+|||+||||||++ +||+|++||++||+||+|||++|||||+|||+
T Consensus 472 ls~~d~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~gl~~y~~ 543 (565)
T PRK01318 472 LSAPDPTNIFNLF------GY--FHIGILPILMGITMFLQQKLNPTPVTDPMQAKIMKFMPLIFTFFFLSFPAGLVLYWI 543 (565)
T ss_pred CCCCCCCHHCCCH------HH--HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5776830220321------57--789999999999999998448999999999999999999999999869999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999998747998
Q gi|254780483|r 544 WSNVISIVQQAVIMKMHGAE 563 (581)
Q Consensus 544 ~~~~~~~~qq~~i~~~~~~~ 563 (581)
+||++||+|||+|||++..|
T Consensus 544 ~~~~~~~~qq~~~~~~~~~~ 563 (565)
T PRK01318 544 VNNLLTIIQQYIINRRLEKK 563 (565)
T ss_pred HHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999998863432
No 2
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=0 Score=723.59 Aligned_cols=487 Identities=26% Similarity=0.434 Sum_probs=328.8
Q ss_pred CEEEEECCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEE-ECCC-----CCC--------------------CCCE-
Q ss_conf 728997664999997699559999953571344788772688-5456-----665--------------------5310-
Q gi|254780483|r 69 PRVELKNPSLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTL-LSPS-----NTK--------------------NAYF- 121 (581)
Q Consensus 69 ~~I~Iend~l~i~is~~GG~I~~~~LK~Y~~~~~~ds~~v~L-l~~~-----~~~--------------------~~y~- 121 (581)
+...+||+...+.||+.||.|.++.|+=.-+ .+..|....+ ++.+ .++ .+|+
T Consensus 224 ~~yvL~n~Y~Qiv~S~~~gai~~iNLp~~s~-en~~Siv~ei~fDr~l~~~~p~~a~FP~~~~~~~~~~~~k~~~GGyyP 302 (791)
T PRK01001 224 SYYVLSNEYMQIVVSQESGAIEGINLPFASD-ENNKSIVNEIGFDRDLASESPSEASFPGLSSIDPQRQQIKNSIGGYYP 302 (791)
T ss_pred CEEEEECCCEEEEEECCCCCHHHCCCCCCCC-CCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 3799835616899954774110005764466-788760141133644550699635588875436322426534566027
Q ss_pred -EEEECCCCCCCCCCCCCCCCEECCCCCCCC------------CCCCCEEEEECCCCEEEEEEEEECCC--CEEEEEEEE
Q ss_conf -000013478775433343210015666566------------66650477415884269999971688--358999863
Q gi|254780483|r 122 -AELDYVSTANNIELPNSNTVWNLISGKILT------------PTTPIKLVFKNANNILFERTISLDEH--YLFKIVDTV 186 (581)
Q Consensus 122 -~~~G~~~~~~~~~~p~~~~~~~~~~~~~l~------------~~~~v~l~~~~~~g~~i~kt~t~~~~--Y~i~i~~~v 186 (581)
...|+++.+ ...+|.......+.+++.+. ++..+.|+ .++ ..++|||++.++ |.++++..+
T Consensus 303 LLRR~ll~~~-~~~~p~~~~Aln~vS~~e~~~~~~~~y~V~~f~~~~i~~e--~~~-~~i~ktY~~~e~~PY~f~~~i~i 378 (791)
T PRK01001 303 LLRRGLLSDS-KKRVPAQYHALNIVSGRELASPVALGYRVVSFDNKSLQLE--SND-GSIRKTYSLGEEQPYAFELAIQL 378 (791)
T ss_pred HHHHHHHCCC-CCCCCCHHHHHEECCCCCCCCHHHCEEEEEEECCCEEEEE--CCC-CCEEEEEECCCCCCEEEEEEEEE
T ss_conf 6652123136-5658604442100144446770131479999638548997--289-71788887788887069999753
Q ss_pred CCCCCCCCCC--CCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECEEEEEEE
Q ss_conf 1576664222--42101202568654442001100000156543210013333333222332346357873110589996
Q gi|254780483|r 187 TNNSIDQIRF--SPRGRIMRHKPQTATNTFGVQEGFIAVLGDKSLVEQKYSDIEKSSISNFHESNSWLGISDKYWASVFI 264 (581)
Q Consensus 187 ~N~s~~~i~~--~~~~~i~r~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~Wva~~qkYF~salI 264 (581)
...+++-|-- .|...+..+..... -.+.+..-+.++..+++.-+..+.-.......-+|+.-.+-||-.++-
T Consensus 379 ~~~~~~lwitsGvPEvEi~S~~~~Pa------~ky~~~k~~k~~~~~v~lpk~~~~~~~~~~~~p~wi~nsng~~g~il~ 452 (791)
T PRK01001 379 TQGSEDLWITSGVPEVEIMSNAFAPA------IKYRVIKKNKSDLDKVKLPKAKDPLAVRNGVYPQWILNSNGYFGIILT 452 (791)
T ss_pred CCCCCCEEEECCCCEEEEECCCCCCC------HHHHEECCCCCCEEEECCCCCCCCEEECCCCCCEEEECCCCEEEEECC
T ss_conf 36666515765997279724898610------321000246662024238887664011168874058727964678615
Q ss_pred ECCCCCEEEEEEE------------CCCCCCCEEEEEECC--CCCCCCCCEEEEEEEEEEECHHHHHHHHHHCCCCCCH-
Q ss_conf 0789841589983------------167664102222024--4445788603678998850002788763220146310-
Q gi|254780483|r 265 PSKETSFHSQFKY------------LSDGHARYQAKFSAN--EITILPGKSITTTNFLFAGAKEFPTIHHYEKDLAIPR- 329 (581)
Q Consensus 265 P~~~~~~~~~~~~------------~~~~~~~y~~~~~~~--~~~i~pg~~~~~~~~lY~GPk~~~~L~~~~~~l~~~~- 329 (581)
|-++...-....+ ...++..|.+.-.-. ...-.|.+..+.+|.+|+||..-.+|+..|+....+.
T Consensus 453 plt~i~~g~~~~~i~g~~vp~rl~~~~~k~~~~~a~~~pgy~~~lpl~~~~g~~~f~~~agp~~~~~lk~~d~~~~n~~g 532 (791)
T PRK01001 453 PLTEIPAGYASSYISGSTVPTRLSQLSPKNQAYPASKYPGYEALLPLPKEAGTYRFLVYAGPLADPTLKTLDRAYTNSKG 532 (791)
T ss_pred CCCCCCCCCEECCCCCCCCCCHHHHHCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 57668976211014688666134430842245642248983474015666875899997167675588888776338788
Q ss_pred ----HHHHHHH-CCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----1233320-110356899----9999998876320163999999999999888999999999998887788899999
Q gi|254780483|r 330 ----FEMLIDW-GWFYFIAKP----MFMLMSYFYNLVGNFGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELR 400 (581)
Q Consensus 330 ----l~~~vd~-Gwf~~i~kp----lf~~L~~l~~~i~NyGiaIIllTilikli~~PLt~ks~~Sm~kM~~lqP~i~~i~ 400 (581)
.-..+-| |||.||++| ||.+|+|||.++||||||||+|||+||+++||||+||++||+|||+|||+|+|||
T Consensus 533 ~~p~y~~~~~~~g~f~fit~pfa~~lf~~m~FF~~lTGSwGLAIILLTIiIRLLLfPLt~KQ~KSMkKMQeLQPeMkEIQ 612 (791)
T PRK01001 533 ENPEYLDCITFRGFFAFITEPFAALLFIIMKFFKFLTGSWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQ 612 (791)
T ss_pred CCCCHHEEEEEEEEEEEECCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_conf 89640012352115446457778999999999975447188999999999999998405899999999988688999999
Q ss_pred HHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCHHHHHHHHHC
Q ss_conf 73145115678999999985048786788999999999999999999876986288753-41000033572566676410
Q gi|254780483|r 401 EKFKQSPPQVLQKAMIQLYKTHNINPLAGCWPILLQIPVFFAIYKVISISLEMRHAPFW-GWIKDLAAADPTNIFTLFGI 479 (581)
Q Consensus 401 ekyk~d~~~~~~~e~m~ly~~~~vnP~~GClP~l~q~p~~~a~~~~~~~~ielr~~~f~-~Wi~dls~~d~~~~~~~~~~ 479 (581)
||||||+ ||+|||||+|||||||||||||||||||||||||||++|++++||||++|+ .||+|||+||+++ ++...
T Consensus 613 EKYKdDp-QKlQqEMMKLYKE~GVNPLgGCLPLLIQMPIFIALY~VL~~sieLRgAsFL~gWI~DLSaPD~lF--~~~~P 689 (791)
T PRK01001 613 QKYKKEP-KRAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLKSSFLLRGASFIPGWIDNLTAPDVLF--SWETP 689 (791)
T ss_pred HHCCCCH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCC--CCCCC
T ss_conf 8807999-99999999999870999156678999999999999999998887518930565776455777455--56776
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC------CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2222027899999999999999999752887------74689999-9999689999999878799999999999999999
Q gi|254780483|r 480 LPFYLPGFMHVGIWPIIMSLSMFIQMKMSPP------PADKGQAM-ILNWMPVVFVFALSSFPAGLIIYWSWSNVISIVQ 552 (581)
Q Consensus 480 ~p~~~~~~~~~~ilp~l~~~~m~~~~k~~p~------~~d~~q~~-~~~~mp~~~~~~~~~~~~gl~~y~~~~~~~~~~q 552 (581)
++|.+ .+++|||||||++||+||||++. +.++.||| ||++||+||+||+++|||||+|||++||+++|+|
T Consensus 690 i~flG---~p~~ILPILmgvtMFLQQKmS~~k~~gP~t~qq~QQKmMm~mMPLmF~fif~nFPSGLvLYWvtSNLLsIvQ 766 (791)
T PRK01001 690 IWFIG---NEFHLLPILLGIVMFLQQKISALKKKGPVTDQQRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSMLLGVIQ 766 (791)
T ss_pred CCCCC---CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf 31135---507799999999999999735888899999449999999999999999999711026869999989999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHH
Q ss_conf 999987479983479898888
Q gi|254780483|r 553 QAVIMKMHGAEIGLIDRLRST 573 (581)
Q Consensus 553 q~~i~~~~~~~~~~~~~~~~~ 573 (581)
||+|||-. ++.++-..+.-+
T Consensus 767 Q~iINKiL-d~K~lk~Ev~~~ 786 (791)
T PRK01001 767 QWVTNKIL-DSKHLKNEVVIN 786 (791)
T ss_pred HHHHHHHH-HHHHHHHHHHHH
T ss_conf 99999973-388888897730
No 3
>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]
Probab=100.00 E-value=0 Score=568.11 Aligned_cols=291 Identities=40% Similarity=0.772 Sum_probs=263.4
Q ss_pred CCCEEEEEECEEEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCC--CEEEEEEEEEEECHHHHHHHHHHCCC
Q ss_conf 4635787311058999607898415899831676641022220244445788--60367899885000278876322014
Q gi|254780483|r 248 SNSWLGISDKYWASVFIPSKETSFHSQFKYLSDGHARYQAKFSANEITILPG--KSITTTNFLFAGAKEFPTIHHYEKDL 325 (581)
Q Consensus 248 ~~~Wva~~qkYF~salIP~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~i~pg--~~~~~~~~lY~GPk~~~~L~~~~~~l 325 (581)
..+|.+..+|||.++++|.+.......... ....+..++......+.++ .+.+....+|.||+..+.+..++.
T Consensus 4 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-- 78 (314)
T COG0706 4 LGGWLGILQLYFASLLIPRDFGRLEVPSPG---GTSRYQSGLKSKLRLVPPGMKASASTELLLLAGPKYVDDLSTSDP-- 78 (314)
T ss_pred CCCCHHHEECCCEEEECCCCCCCCCCCCCC---CCHHHHHHCCCCHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCC--
T ss_conf 331010100120354156654442213578---742566640340021044211366520355416765553000351--
Q ss_pred CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 631012333201103568999999998876320-1639999999999998889999999999988877888999997314
Q gi|254780483|r 326 AIPRFEMLIDWGWFYFIAKPMFMLMSYFYNLVG-NFGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFK 404 (581)
Q Consensus 326 ~~~~l~~~vd~Gwf~~i~kplf~~L~~l~~~i~-NyGiaIIllTilikli~~PLt~ks~~Sm~kM~~lqP~i~~i~ekyk 404 (581)
+|.++|+|||+++.+|+|+++.++|.+.| |||++||++|++||++++|++.+|++||+||+++|||++|||||||
T Consensus 79 ----~~~~~~~~~f~~~~~~~~~~~~~~~~~~g~n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk 154 (314)
T COG0706 79 ----LDLTSDYGWFWNILAPLFPLLLFIDSFSGLNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYK 154 (314)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHC
T ss_conf ----1345567899999999999999888872520889999999999999840778886549999983788999998806
Q ss_pred -CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf -5115678999999985048786788999999999999999999876986288753410000335725666764102222
Q gi|254780483|r 405 -QSPPQVLQKAMIQLYKTHNINPLAGCWPILLQIPVFFAIYKVISISLEMRHAPFWGWIKDLAAADPTNIFTLFGILPFY 483 (581)
Q Consensus 405 -~d~~~~~~~e~m~ly~~~~vnP~~GClP~l~q~p~~~a~~~~~~~~ielr~~~f~~Wi~dls~~d~~~~~~~~~~~p~~ 483 (581)
+|+ |++|||||+|||||||||++||+|+|+|+|||+|+|++++++.|+|+++|.+|++|||.+||++++
T Consensus 155 ~~~~-~~~q~e~~~Lyk~~~vnPl~gclP~liQ~Pifialy~~l~~~~~l~~~~f~~w~~dl~~~dp~~~~--------- 224 (314)
T COG0706 155 GTDK-QKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRSTVELRGAPFLGWITDLSLPDPDYIL--------- 224 (314)
T ss_pred CCCH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHH---------
T ss_conf 5429-999999999999829992355678999999999999999960110344376665523678973446---------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 027899999999999999999752887----7468999999996899999998787999999999999999999999874
Q gi|254780483|r 484 LPGFMHVGIWPIIMSLSMFIQMKMSPP----PADKGQAMILNWMPVVFVFALSSFPAGLIIYWSWSNVISIVQQAVIMKM 559 (581)
Q Consensus 484 ~~~~~~~~ilp~l~~~~m~~~~k~~p~----~~d~~q~~~~~~mp~~~~~~~~~~~~gl~~y~~~~~~~~~~qq~~i~~~ 559 (581)
++||+||++||+|+++++. ++||+|++||++||++|++|+.++||||+|||++||++|++||++|+|.
T Consensus 225 --------~~pii~gv~~f~q~~ls~~~~~~~q~~~~~~~~~impi~f~~~~~~~PaGL~LYW~~~n~fsi~Qq~ii~~~ 296 (314)
T COG0706 225 --------LLPILAGVTMFLQQKLSPRNLSTPQDPQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLFSILQQYILNKP 296 (314)
T ss_pred --------HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
T ss_conf --------999999999999999635357653579999999999999999998747899999997239999999999042
Q ss_pred CCCCCC
Q ss_conf 799834
Q gi|254780483|r 560 HGAEIG 565 (581)
Q Consensus 560 ~~~~~~ 565 (581)
...+.+
T Consensus 297 ~~~~~~ 302 (314)
T COG0706 297 LEKKRT 302 (314)
T ss_pred CCHHHH
T ss_conf 210333
No 4
>PRK00145 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=0 Score=483.31 Aligned_cols=204 Identities=33% Similarity=0.602 Sum_probs=187.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 1035689999999988763201--------63999999999999888999999999998887788899999731451156
Q gi|254780483|r 338 WFYFIAKPMFMLMSYFYNLVGN--------FGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQSPPQ 409 (581)
Q Consensus 338 wf~~i~kplf~~L~~l~~~i~N--------yGiaIIllTilikli~~PLt~ks~~Sm~kM~~lqP~i~~i~ekyk~d~~~ 409 (581)
.|+||++|+.++++++|+|++| ||+|||++|++||++++||+.||++||+||+++|||+++||||||||+ |
T Consensus 1 ~~~~l~~~~~~~~~~i~~~~~~~~~~~g~~~g~aIil~TiivRlil~Pl~~kq~ks~~km~~lqPel~~iq~kyk~d~-q 79 (225)
T PRK00145 1 MMRYLNNAFVQFFQFIHGFVSSLISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSQRMNEIQPEIKKLQAKYKNDP-Q 79 (225)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCH-H
T ss_conf 978999999999999999987426778864999999999999999999999999999999984878999999854782-7
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHH
Q ss_conf 78999999985048786788999999999999999999876986288753410000335725666764102222027899
Q gi|254780483|r 410 VLQKAMIQLYKTHNINPLAGCWPILLQIPVFFAIYKVISISLEMRHAPFWGWIKDLAAADPTNIFTLFGILPFYLPGFMH 489 (581)
Q Consensus 410 ~~~~e~m~ly~~~~vnP~~GClP~l~q~p~~~a~~~~~~~~ielr~~~f~~Wi~dls~~d~~~~~~~~~~~p~~~~~~~~ 489 (581)
++|+|||+|||||||||++||||+|+|+|||+|+|++++...++++++| +|++|||+|||++
T Consensus 80 ~~q~e~~~Lykk~ginPl~gclp~liQ~Pif~~ly~~l~~~~~l~~~~f-lwi~dLs~~d~~~----------------- 141 (225)
T PRK00145 80 KLQQEMMKLYKEKNVNPLGGCLPLLIQWPILIALYYVFNNLTGINGVSF-LWIKDLAAPDVTW----------------- 141 (225)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-EEECCCCCCCHHH-----------------
T ss_conf 8999999999984998227788899999999999999986887058982-2100356543999-----------------
Q ss_pred HHHHHHHHHHHHHHHHHCCCC-CC---CHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999999999999999752887-74---68999999-996899999998787999999999999999999999874799
Q gi|254780483|r 490 VGIWPIIMSLSMFIQMKMSPP-PA---DKGQAMIL-NWMPVVFVFALSSFPAGLIIYWSWSNVISIVQQAVIMKMHGA 562 (581)
Q Consensus 490 ~~ilp~l~~~~m~~~~k~~p~-~~---d~~q~~~~-~~mp~~~~~~~~~~~~gl~~y~~~~~~~~~~qq~~i~~~~~~ 562 (581)
+||+++++++++++++... .. ++.|+++| ..||++++++++++||||++||++||+++++||++++|....
T Consensus 142 --iLpil~~~~~~l~~~l~~~~~~~~~~~~~~~~m~~~m~i~~~~~~~~~Pagl~lYW~~snl~~i~Q~~~i~~~~~k 217 (225)
T PRK00145 142 --ILPILSGATTYLSGYLMTKATSSQAGGMQMKTMNIGMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTYFIKKLPLK 217 (225)
T ss_pred --HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --9999999999999998188999965699999999999999999998788999999999899999999999621035
No 5
>PRK01622 OxaA-like protein precursor; Validated
Probab=100.00 E-value=0 Score=482.88 Aligned_cols=212 Identities=35% Similarity=0.657 Sum_probs=188.1
Q ss_pred HHCCHH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCC--C
Q ss_conf 201103-56899999999887632-016399999999999988899999999999----888778889999973145--1
Q gi|254780483|r 335 DWGWFY-FIAKPMFMLMSYFYNLV-GNFGIAIMLTTVFVKLLFFPLAKKQYVSTA----NMKNIQPKIDELREKFKQ--S 406 (581)
Q Consensus 335 d~Gwf~-~i~kplf~~L~~l~~~i-~NyGiaIIllTilikli~~PLt~ks~~Sm~----kM~~lqP~i~~i~ekyk~--d 406 (581)
..|||. ++..|+-++++|++++. ||||||||++||+||++++||+.||+|||. ||+++||||+|||||||| |
T Consensus 33 ~~g~~~~~~v~p~~~~i~~~a~~~~gnyGlaIIl~TiivRlil~PL~~kq~ks~~~mq~KM~~lqPel~~Iq~Kyk~~kd 112 (266)
T PRK01622 33 SDGFFHHYFVYPFSFLIQFVAHHIHGSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAKLKDTKD 112 (266)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCC
T ss_conf 99707999999999999999987588499999999999999998702999999999999999828426899998468988
Q ss_pred H--HHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf 1--567899999998504878678-8999999999999999999876986288753410000335725666764102222
Q gi|254780483|r 407 P--PQVLQKAMIQLYKTHNINPLA-GCWPILLQIPVFFAIYKVISISLEMRHAPFWGWIKDLAAADPTNIFTLFGILPFY 483 (581)
Q Consensus 407 ~--~~~~~~e~m~ly~~~~vnP~~-GClP~l~q~p~~~a~~~~~~~~ielr~~~f~~Wi~dls~~d~~~~~~~~~~~p~~ 483 (581)
+ ++++|+|||+|||||||||+| ||||||+|||||+|||++++.+.|+|+++| +|+ ||+.+| +
T Consensus 113 ~~~q~~~qqEmm~LYke~gvNPla~GCLP~LIQmPIf~aLy~~i~~~~~l~~~~F-lw~-~L~~~d--~----------- 177 (266)
T PRK01622 113 LEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRRTEEIATHSF-LWF-NLGHAD--H----------- 177 (266)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-EEE-ECCCCC--H-----------
T ss_conf 8999999999999999849996134578999999999999999985598717981-123-258630--9-----------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 027899999999999999999752887-7468999---9999-9689999999878799999999999999999999987
Q gi|254780483|r 484 LPGFMHVGIWPIIMSLSMFIQMKMSPP-PADKGQA---MILN-WMPVVFVFALSSFPAGLIIYWSWSNVISIVQQAVIMK 558 (581)
Q Consensus 484 ~~~~~~~~ilp~l~~~~m~~~~k~~p~-~~d~~q~---~~~~-~mp~~~~~~~~~~~~gl~~y~~~~~~~~~~qq~~i~~ 558 (581)
|+|+++|+++|+|++++.. +.+|.|+ |+|. +||+|+++|+.++||||+|||++||+++|+||++++|
T Consensus 178 --------ilpila~~~~~~q~~l~~~~~~~~~q~~~~k~M~~~mPim~~~~~~~~PagL~LYW~vsnlf~i~Qq~ii~k 249 (266)
T PRK01622 178 --------ILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQGFMMPAMILFMSFAAPSALVLYWITGGLFLMVQTIVLRK 249 (266)
T ss_pred --------HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --------999999999999999758899996899999999999999999999844899999999979999999999998
Q ss_pred HCCCCCCHHHH
Q ss_conf 47998347989
Q gi|254780483|r 559 MHGAEIGLIDR 569 (581)
Q Consensus 559 ~~~~~~~~~~~ 569 (581)
....|.+...+
T Consensus 250 ~~~k~~~~~~~ 260 (266)
T PRK01622 250 VMEKEEKQLQK 260 (266)
T ss_pred HHHHHHHHHHH
T ss_conf 86588999999
No 6
>PRK02944 OxaA-like protein precursor; Validated
Probab=100.00 E-value=0 Score=479.29 Aligned_cols=202 Identities=37% Similarity=0.714 Sum_probs=185.1
Q ss_pred HCCHH-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH---HHH
Q ss_conf 01103-568999999998876320-1639999999999998889999999999988877888999997314511---567
Q gi|254780483|r 336 WGWFY-FIAKPMFMLMSYFYNLVG-NFGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQSP---PQV 410 (581)
Q Consensus 336 ~Gwf~-~i~kplf~~L~~l~~~i~-NyGiaIIllTilikli~~PLt~ks~~Sm~kM~~lqP~i~~i~ekyk~d~---~~~ 410 (581)
.|||. ++.+|+.++++|+++++| |||||||++||+||++++||+.||++||+|||++||||++||||||+|+ +|+
T Consensus 33 ~g~~~~~~v~p~~~~i~~~a~~~g~~yGlaIIl~TiiVRlillPL~~kq~ks~~kMq~lqPe~~~Iq~Ky~~kd~~~~qk 112 (255)
T PRK02944 33 TGIWNEYFVYPLSQLITYFANLFGSNYGLAIIVVTLLIRLAILPLMIKQTKSTKAMQALQPEMVKLKEKYSSKDQATQQK 112 (255)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHH
T ss_conf 98189999999999999999864971999999999999999998899999999999884867999999865897678999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 89999999850487867889999999999999999998769862887534100003357256667641022220278999
Q gi|254780483|r 411 LQKAMIQLYKTHNINPLAGCWPILLQIPVFFAIYKVISISLEMRHAPFWGWIKDLAAADPTNIFTLFGILPFYLPGFMHV 490 (581)
Q Consensus 411 ~~~e~m~ly~~~~vnP~~GClP~l~q~p~~~a~~~~~~~~ielr~~~f~~Wi~dls~~d~~~~~~~~~~~p~~~~~~~~~ 490 (581)
+|+|||+|||||||||+|||||+|+|+|||+|||++++.+.|+++++| +|+ ||+.+||++
T Consensus 113 ~qqE~~~Lykk~gvnP~~GCLP~LIQ~PI~~aly~ai~~~~~i~~~~F-lw~-dL~~~dp~~------------------ 172 (255)
T PRK02944 113 LQQEMMQLYQKNGVNPLAGCLPIFIQMPILFAFYHAIMRTREISKHTF-LWF-DLGQADPYY------------------ 172 (255)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE-EEE-CCCCCCHHH------------------
T ss_conf 999999999983999468889999999999999999998787236974-311-467633999------------------
Q ss_pred HHHHHHHHHHHHHHHHCCCC--CCCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999752887--74689999999-9689999999878799999999999999999999987
Q gi|254780483|r 491 GIWPIIMSLSMFIQMKMSPP--PADKGQAMILN-WMPVVFVFALSSFPAGLIIYWSWSNVISIVQQAVIMK 558 (581)
Q Consensus 491 ~ilp~l~~~~m~~~~k~~p~--~~d~~q~~~~~-~mp~~~~~~~~~~~~gl~~y~~~~~~~~~~qq~~i~~ 558 (581)
+|||++|+++|+|++++.. +.+..|+++|. +||+|+++|..++||||.|||++||+++|+||++|++
T Consensus 173 -ilpila~v~~flq~~~~~~~~~~~~~qmk~m~~~mPimi~~~~~~~Pagl~LYW~vsn~f~i~Qt~ii~~ 242 (255)
T PRK02944 173 -ILPIVAGITTFIQQKLMMAGTAGQNPQMAMMLWLMPIMILIFAINFPAALSLYWVVGNIFGIAQTYLIKG 242 (255)
T ss_pred -HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf -9999999999999998068999989999999999999999999979999999999999999999999678
No 7
>PRK02463 OxaA-like protein precursor; Provisional
Probab=100.00 E-value=0 Score=479.94 Aligned_cols=218 Identities=28% Similarity=0.507 Sum_probs=190.6
Q ss_pred HCC-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCC--C-
Q ss_conf 011-03568999999998876320-1639999999999998889999999999----9888778889999973145--1-
Q gi|254780483|r 336 WGW-FYFIAKPMFMLMSYFYNLVG-NFGIAIMLTTVFVKLLFFPLAKKQYVST----ANMKNIQPKIDELREKFKQ--S- 406 (581)
Q Consensus 336 ~Gw-f~~i~kplf~~L~~l~~~i~-NyGiaIIllTilikli~~PLt~ks~~Sm----~kM~~lqP~i~~i~ekyk~--d- 406 (581)
.|| ..++..|+-+++.|+.+++| |||||||++||+||++++||+.++.+|| +||++|||||++||||||+ |
T Consensus 34 ~G~~~~~~v~p~~~~i~~~a~~~g~nyG~aIIl~TiiIRlillPL~~~Q~kk~~~~q~KMq~lQPe~~~IQ~KyK~~~~~ 113 (307)
T PRK02463 34 TGMIWNFLGKPMSYFIDYFANNLGLGFGLAIIIVTIIVRTLILPLGLYQSWKATYQSEKMAYLKPVFEPINERLKNAKTQ 113 (307)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCH
T ss_conf 74089999999999999999863877338999999999999983018899988999999998587899999984378988
Q ss_pred -HHHHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
Q ss_conf -1567899999998504878678--8999999999999999999876986288753410000335725666764102222
Q gi|254780483|r 407 -PPQVLQKAMIQLYKTHNINPLA--GCWPILLQIPVFFAIYKVISISLEMRHAPFWGWIKDLAAADPTNIFTLFGILPFY 483 (581)
Q Consensus 407 -~~~~~~~e~m~ly~~~~vnP~~--GClP~l~q~p~~~a~~~~~~~~ielr~~~f~~Wi~dls~~d~~~~~~~~~~~p~~ 483 (581)
.++++|||||+|||||||||+| ||||||||||||+|||.+++.+.|+|+++| ||+ ||+.|| .
T Consensus 114 e~k~~~qqEmm~LYke~gvNP~gs~GCLPlLIQmPIf~aLY~ai~~~~~l~~~~F-lwi-~Lg~p~--~----------- 178 (307)
T PRK02463 114 EEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAAQYTKGVSSSTF-LGI-DLGSRS--L----------- 178 (307)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCE-EEE-ECCCCC--H-----------
T ss_conf 9999999999999998498976444337899999999999999974233236865-545-688732--9-----------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02789999999999999999975288774689---999-99996899999998787999999999999999999999874
Q gi|254780483|r 484 LPGFMHVGIWPIIMSLSMFIQMKMSPPPADKG---QAM-ILNWMPVVFVFALSSFPAGLIIYWSWSNVISIVQQAVIMKM 559 (581)
Q Consensus 484 ~~~~~~~~ilp~l~~~~m~~~~k~~p~~~d~~---q~~-~~~~mp~~~~~~~~~~~~gl~~y~~~~~~~~~~qq~~i~~~ 559 (581)
+||+++++++|+|++++....++. |++ ||++||+|++||++++||||+|||++||+++|+||++||.-
T Consensus 179 --------iL~ila~v~~fiq~~ls~~~~~~~q~~qmk~Mm~~mPimi~~~~~~~PagL~LYW~vsnl~~IiQqliin~~ 250 (307)
T PRK02463 179 --------VLTAIIAALYFFQSWLSMMGVPEEQREQMKTMMYMMPIMMVFFSFSSPAGVALYWLVGGFFSIIQQLITTYI 250 (307)
T ss_pred --------HHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf --------999999999999999627789868899999999999999999998758999999999899999999999622
Q ss_pred CCCCCCHHHHHHHHHHCCC
Q ss_conf 7998347989888852046
Q gi|254780483|r 560 HGAEIGLIDRLRSTFSKNY 578 (581)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~ 578 (581)
+ +|++-..+++-+++++
T Consensus 251 ~--~p~~~~~i~~e~~~~p 267 (307)
T PRK02463 251 L--KPRLRKQIKEEFAKNP 267 (307)
T ss_pred C--CHHHHHHHHHHHHHCC
T ss_conf 6--7679999999987289
No 8
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=0 Score=480.19 Aligned_cols=241 Identities=28% Similarity=0.515 Sum_probs=188.2
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCCCCHHH
Q ss_conf 3201103568999999998876320163999999999999888999999999998887788899----999731451156
Q gi|254780483|r 334 IDWGWFYFIAKPMFMLMSYFYNLVGNFGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKID----ELREKFKQSPPQ 409 (581)
Q Consensus 334 vd~Gwf~~i~kplf~~L~~l~~~i~NyGiaIIllTilikli~~PLt~ks~~Sm~kM~~lqP~i~----~i~ekyk~d~~~ 409 (581)
+|||+.++..++++.+|+|+|+++||||||||+|||+||++++|||+||++||+|||++||||+ |||||||||+ |
T Consensus 1 md~gig~~~~~~~~~il~f~~~~~~nyG~aIillTi~ir~~l~PL~~kq~~s~~kM~~~qP~~~~~~~ei~~kyk~d~-~ 79 (376)
T PRK02654 1 MDFGIGFISNNVMLPILDFFYGIVPSYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYKNDP-Q 79 (376)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCH-H
T ss_conf 975134786537999999999601309999999999999999874899999999998858546799999998713889-9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHCCCCC-----CCCCCC-
Q ss_conf 789999999850487867889999999999999999998769-------------------8628875-----341000-
Q gi|254780483|r 410 VLQKAMIQLYKTHNINPLAGCWPILLQIPVFFAIYKVISISL-------------------EMRHAPF-----WGWIKD- 464 (581)
Q Consensus 410 ~~~~e~m~ly~~~~vnP~~GClP~l~q~p~~~a~~~~~~~~i-------------------elr~~~f-----~~Wi~d- 464 (581)
|+|+|||+|||||| ||||||||||+|||||||||+++|++- ....++| -.|++|
T Consensus 80 k~q~e~m~lyk~~g-nPl~GCLP~liQmPi~~aLy~vlr~~pfa~v~Y~~~vki~~~~~i~~I~~~~~~s~~~~if~~~~ 158 (376)
T PRK02654 80 KQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATLRGSPFADVNYTVNLQVLPSEQIAAVEPKPFKSKPHNIFITEG 158 (376)
T ss_pred HHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHHCCCCCCCCCHHEEECCC
T ss_conf 99999999998719-97488899999999999999999558753455433200050877777323446775300011244
Q ss_pred --------------------------------------------------------------------CCCCCHH---HH
Q ss_conf --------------------------------------------------------------------0335725---66
Q gi|254780483|r 465 --------------------------------------------------------------------LAAADPT---NI 473 (581)
Q Consensus 465 --------------------------------------------------------------------ls~~d~~---~~ 473 (581)
|...|.. .|
T Consensus 159 ~h~~v~a~lp~g~kl~vg~~v~~~~~~~~g~~~~~~~~~~~~~~~~p~w~v~~g~~~~~~~~dgt~~al~pgd~~i~~~I 238 (376)
T PRK02654 159 VHYPVIASLPGGTKLGVGESVQIQLQTTEGKSFSQLLAEYNGSKLSPTWKVTKGEERVKVSADGTIEALAPGDATVQVTI 238 (376)
T ss_pred CCCCEEEECCCCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCCCEECCCCCCCCEECCC
T ss_conf 45530121467653355641246631567621888875244100486301204664111356665001366543000014
Q ss_pred HHH-----------HHCCCCCCHHHH--HHHHHHHHHHHHHHHHHHCCCC--CCCHHHHHHHHHHHHHHH--HHHHHHHH
Q ss_conf 676-----------410222202789--9999999999999999752887--746899999999689999--99987879
Q gi|254780483|r 474 FTL-----------FGILPFYLPGFM--HVGIWPIIMSLSMFIQMKMSPP--PADKGQAMILNWMPVVFV--FALSSFPA 536 (581)
Q Consensus 474 ~~~-----------~~~~p~~~~~~~--~~~ilp~l~~~~m~~~~k~~p~--~~d~~q~~~~~~mp~~~~--~~~~~~~~ 536 (581)
..+ .+...++.+.-. .|.++++++|+|+|++|+++.+ +++|+|+.|+++||+||. |+|..+||
T Consensus 239 pgiaa~~~Fl~I~aL~~vg~~~~g~I~w~Ilili~~~Gvsl~lsQ~ls~~~~~~npqq~~mnkimPvMfsgmFlfF~LPa 318 (376)
T PRK02654 239 PGLAAKSGFLFIKALGRVGFYDDGAINWDILGMVGGFGVSLYLSQVLSGQGMPANPQQSTANKITPVMFSGMFLFFPLPA 318 (376)
T ss_pred CCHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 20220477503332234565556514488999999999999999997279999997999999874899988897011337
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
Q ss_conf 99999999999999999999874799834798988885204
Q gi|254780483|r 537 GLIIYWSWSNVISIVQQAVIMKMHGAEIGLIDRLRSTFSKN 577 (581)
Q Consensus 537 gl~~y~~~~~~~~~~qq~~i~~~~~~~~~~~~~~~~~~~~~ 577 (581)
||.+||+++|++.++||++|||.. .++++...++++.||.
T Consensus 319 GvgLYWvisnIfq~vQq~iLnK~~-~penlqkii~e~~~~~ 358 (376)
T PRK02654 319 GVLLYMVIANIFQTLQTFLLSREP-LPENLQKILDELQKSK 358 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
T ss_conf 899999999999999999995568-8565999999998766
No 9
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=0 Score=468.38 Aligned_cols=238 Identities=27% Similarity=0.474 Sum_probs=178.4
Q ss_pred CCHHHHHHHHHH----HHHHHHH---HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 110356899999----9998876---320-------16399999999999988899999999999888778889999973
Q gi|254780483|r 337 GWFYFIAKPMFM----LMSYFYN---LVG-------NFGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREK 402 (581)
Q Consensus 337 Gwf~~i~kplf~----~L~~l~~---~i~-------NyGiaIIllTilikli~~PLt~ks~~Sm~kM~~lqP~i~~i~ek 402 (581)
+||++|--|+-| +|..+|. .+| +||+|||+|||+||++++||+.||+|||+|||+|||||+|||||
T Consensus 6 ~~~~~il~P~~w~v~~il~~~h~~l~~~g~~~~~G~sW~LsIIllTivVR~ll~PL~~KQ~kS~~kMq~lqPem~~IQ~K 85 (325)
T PRK01315 6 DFLGFILWPIKWVIELILVQFHTLLGALGFGPDSGLSWVLSIVGLVIVIRAALIPLFVKQIKAQRRMQEIQPEMKKIQEK 85 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999997899999999999999998825787666399999999999999999988999999999999867999999998
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-HHHHHHHH----
Q ss_conf 1451156789999999850487867889999999999999999998769862887534100003357-25666764----
Q gi|254780483|r 403 FKQSPPQVLQKAMIQLYKTHNINPLAGCWPILLQIPVFFAIYKVISISLEMRHAPFWGWIKDLAAAD-PTNIFTLF---- 477 (581)
Q Consensus 403 yk~d~~~~~~~e~m~ly~~~~vnP~~GClP~l~q~p~~~a~~~~~~~~ielr~~~f~~Wi~dls~~d-~~~~~~~~---- 477 (581)
||||+ |++|+|||+|||||||||+|||||||+|||||||||++++++++ |+.++..|-+||+.-. ...+|..+
T Consensus 86 Yk~d~-qk~qqEmmkLYke~gvNPlaGCLPlLiQmPIf~~Ly~vL~~~~~-~~~~~g~~~~~l~~~~~~a~~fg~pl~~~ 163 (325)
T PRK01315 86 YKGDR-ERMSQEMMKLYKETGTNPLSSCLPILLQMPIFFALYQVLNSAQA-RGDGIGPLNGPLLESFRSAHIFGAPLAAS 163 (325)
T ss_pred CCCCH-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCHHHHHHHCCCCCCCCCCCHH
T ss_conf 26989-99999999999983999406779999999999999999998776-05763323266787621263058774000
Q ss_pred -----HCCCCCCHHHHHHHHHHHHHHHHHHHHHHC-C----CC-C-CCHH--HHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----102222027899999999999999999752-8----87-7-4689--99999-9968999999987879999999
Q gi|254780483|r 478 -----GILPFYLPGFMHVGIWPIIMSLSMFIQMKM-S----PP-P-ADKG--QAMIL-NWMPVVFVFALSSFPAGLIIYW 542 (581)
Q Consensus 478 -----~~~p~~~~~~~~~~ilp~l~~~~m~~~~k~-~----p~-~-~d~~--q~~~~-~~mp~~~~~~~~~~~~gl~~y~ 542 (581)
+..|..........+++++|++++|++|+. . |. . .+|+ |+|+| ++||+||++++++||+||.+||
T Consensus 164 f~~~~~~~~~~~~~~iv~~il~vlm~~s~f~~q~qlm~k~~~~~~~~~p~~~qqk~Mm~~mPlm~~~~~~~fPaGl~lYW 243 (325)
T PRK01315 164 FSDANGAVTALTDVMVVAAVMVVLMSASQFFTQLQLMTKNMPPETKATPMFQQQKMLLYLLPVMFAVSGIAFPVGVLFYW 243 (325)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 04543335530158899999999999999999999703479986547869999999999999999999977899999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHC
Q ss_conf 9999999999999987479983479898-888520
Q gi|254780483|r 543 SWSNVISIVQQAVIMKMHGAEIGLIDRL-RSTFSK 576 (581)
Q Consensus 543 ~~~~~~~~~qq~~i~~~~~~~~~~~~~~-~~~~~~ 576 (581)
++||++|++||++|+|++..+-....+. ++|..|
T Consensus 244 ~tsNl~ti~QQ~~v~r~~p~pgs~a~~~~~~r~~~ 278 (325)
T PRK01315 244 LTSNVWTMGQQFYVIRNNPTPGSKAAEARRERLAR 278 (325)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 99999999999999970899997578999878876
No 10
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=0 Score=467.03 Aligned_cols=230 Identities=23% Similarity=0.399 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 03568999999998876320---------163999999999999888999999999998887788899999731451156
Q gi|254780483|r 339 FYFIAKPMFMLMSYFYNLVG---------NFGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQSPPQ 409 (581)
Q Consensus 339 f~~i~kplf~~L~~l~~~i~---------NyGiaIIllTilikli~~PLt~ks~~Sm~kM~~lqP~i~~i~ekyk~d~~~ 409 (581)
|.||..|+.|+|.++|.+++ +||+|||++||+||++++||+.||+|||+|||+|||||+|||||||||+ |
T Consensus 2 ~~~~~~~~~~vl~~~h~l~~~~~~~~~~~swglsIIllTiiVR~ll~PL~~kq~kS~~kMq~lqPei~~Iq~KYk~D~-q 80 (304)
T PRK03449 2 LDFIYYPVSAILWFWHKLFAFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDR-Q 80 (304)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCH-H
T ss_conf 005999999999999999997728866619999999999999999999899999999999985878999998865869-9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH-CCCC-CCCCCCCCCCCCHHHHH
Q ss_conf 789999999850487867889999999999999999998769-------------86-2887-53410000335725666
Q gi|254780483|r 410 VLQKAMIQLYKTHNINPLAGCWPILLQIPVFFAIYKVISISL-------------EM-RHAP-FWGWIKDLAAADPTNIF 474 (581)
Q Consensus 410 ~~~~e~m~ly~~~~vnP~~GClP~l~q~p~~~a~~~~~~~~i-------------el-r~~~-f~~Wi~dls~~d~~~~~ 474 (581)
++|||||+|||||||||+|||||+|||||||+|||+++++.- |. ++.+ ++++..|+++.-...+|
T Consensus 81 k~qqE~mkLYke~gvNPl~GCLP~LiQmPIf~~LY~vlr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sfl~~~~f 160 (304)
T PRK03449 81 RMALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGLSVEENRNTPNYVFSAEDVQSFLDANLF 160 (304)
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 99999999999859993156699999999999999999850123332132111025430474100565667666668772
Q ss_pred H-------------HHHCCCCCCHHHHHHH-HHHHHHHHHHHHHHHCCC-----C-CCCHHH---HHHH-HHHHHHHHHH
Q ss_conf 7-------------6410222202789999-999999999999975288-----7-746899---9999-9968999999
Q gi|254780483|r 475 T-------------LFGILPFYLPGFMHVG-IWPIIMSLSMFIQMKMSP-----P-PADKGQ---AMIL-NWMPVVFVFA 530 (581)
Q Consensus 475 ~-------------~~~~~p~~~~~~~~~~-ilp~l~~~~m~~~~k~~p-----~-~~d~~q---~~~~-~~mp~~~~~~ 530 (581)
. +.....|.......+. .++++++++++++++++. . ..+|+| +|+| ++||+|++++
T Consensus 161 g~pl~~~~~~~~~~~~~~~~~~~~~i~~~~~pl~il~~~~~~~~~~~s~~~~~~~~~~n~q~~~m~k~M~~~mPlm~~~~ 240 (304)
T PRK03449 161 GAPLSAYITMQRSGLDAFTDFSRTAIILVGVPLMIIAGVATHFNARASVARQSAEAAANPQTAMMNKLALWVFPLGVLVG 240 (304)
T ss_pred CCCHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 69727653266110012245442006999999999999999999999874358888999769999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 987879999999999999999999998747998347989
Q gi|254780483|r 531 LSSFPAGLIIYWSWSNVISIVQQAVIMKMHGAEIGLIDR 569 (581)
Q Consensus 531 ~~~~~~gl~~y~~~~~~~~~~qq~~i~~~~~~~~~~~~~ 569 (581)
+.++||||++||++||+++|+||++|+|++..|++....
T Consensus 241 ~~~~PaGL~lYWi~sNl~~i~QQ~~i~~~~~~~~~~~~~ 279 (304)
T PRK03449 241 GPFLPLAILLYWFSNNIWTFGQQHYVFGKIDKEEEAKKQ 279 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 996999999999999999999999997138997127999
No 11
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=100.00 E-value=0 Score=450.02 Aligned_cols=349 Identities=28% Similarity=0.489 Sum_probs=277.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC--------CCCCCCCCCHHCCCCCCEEEEEC
Q ss_conf 2789999999999999997513789887654433333445677667755--------56666676100014587289976
Q gi|254780483|r 4 NWNYFVAIALSVIIVYAWQNFYVYPRIEEMNNERKNIQTVKQPNQVDNS--------YAAVLIDDRAQALSMSPRVELKN 75 (581)
Q Consensus 4 nKn~iIai~Ls~~ill~w~~~~~~p~~e~~~~~~~~~~s~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~I~Ien 75 (581)
+||+|||++||++||++|++|+.+|+++++.+++..++....+...+.. .......+.......+++|+|||
T Consensus 1 dkn~lia~~Ls~~ili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ien 80 (366)
T TIGR03593 1 NRRLILAIALSFVIFLLWQAWQVDPGPPPPKPPAAAQTASAQSATAAATPAAAPPAADAPSAAAAADAAAATAKRITVKT 80 (366)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf 91036999999999999999707778888755310121135667777777777754445555555433335675699985
Q ss_pred CEEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCC-CCCCCCCCCCEECCCCC-CCC-C
Q ss_conf 64999997699559999953571344788772688545666553100000134787-75433343210015666-566-6
Q gi|254780483|r 76 PSLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTKNAYFAELDYVSTAN-NIELPNSNTVWNLISGK-ILT-P 152 (581)
Q Consensus 76 d~l~i~is~~GG~I~~~~LK~Y~~~~~~ds~~v~Ll~~~~~~~~y~~~~G~~~~~~-~~~~p~~~~~~~~~~~~-~l~-~ 152 (581)
|+++++||++||+|+++.||+|+.+.+++++++.|++. +..+.|++++|+...+. ....++.++.|+..... .+. +
T Consensus 81 ~~~~~~is~~Gg~I~~~~LK~y~~~~~~~~~~v~L~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 159 (366)
T TIGR03593 81 DVLRASISTKGGDIDSLELKKYKETLDKDSPPVLLLSN-GTERLYVAQSGLIGANGADLALPGHRTVWQAEGGEYTLTPG 159 (366)
T ss_pred CCEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCC-CCCCCCEEEECCCCCCCCCCCCCCCCCCEEECCCCEEECCC
T ss_conf 83999997899668999813553323789971880489-98874167404524687422478876307843771575699
Q ss_pred CCCCEEEEECCCCEEEEEEEEEC-CCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCC---CCCCEEECCCCCC
Q ss_conf 66504774158842699999716-8835899986315766642224210120256865444200---1100000156543
Q gi|254780483|r 153 TTPIKLVFKNANNILFERTISLD-EHYLFKIVDTVTNNSIDQIRFSPRGRIMRHKPQTATNTFG---VQEGFIAVLGDKS 228 (581)
Q Consensus 153 ~~~v~l~~~~~~g~~i~kt~t~~-~~Y~i~i~~~v~N~s~~~i~~~~~~~i~r~~~~~~~~~~~---~~~g~~~~~~d~~ 228 (581)
..+++|++.+++|++++|+|+|+ ++|+++++++|+|.|+.++.+.++.++.|+..+...+... .+.|+++..++++
T Consensus 160 ~~~v~~~~~~~~g~~i~k~yt~~~d~Y~i~~~~~v~n~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 239 (366)
T TIGR03593 160 QLPVTLTWDNGNGVTVTKTYTFDRDSYLIDVEYKITNNGGAPVSLSLYGQLKRDLSPTEKSTYFLHETFTGAAYYTDGEK 239 (366)
T ss_pred CEEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCEEEEEEEEEEEECCCCC
T ss_conf 75689999889996999999993895789999999758787310201389873787888775134330035799848984
Q ss_pred CCCCCCCCCCCCCCC-CCCCCCCEEEEEECEEEEEEEECCCCCEEEEEEE-CCCCCCCEEEEEECCCCCCCCCCEEEEEE
Q ss_conf 210013333333222-3323463578731105899960789841589983-16766410222202444457886036789
Q gi|254780483|r 229 LVEQKYSDIEKSSIS-NFHESNSWLGISDKYWASVFIPSKETSFHSQFKY-LSDGHARYQAKFSANEITILPGKSITTTN 306 (581)
Q Consensus 229 ~~~~~~~d~~~~~~~-~~~~~~~Wva~~qkYF~salIP~~~~~~~~~~~~-~~~~~~~y~~~~~~~~~~i~pg~~~~~~~ 306 (581)
+++++++|+++++.. ...+.++|+|++||||++||||+++......... .....+.|.+++..+...+.||++.+.++
T Consensus 240 ~~~~~~~d~~~~~~~~~~~~~~~W~~~~~~YF~saliP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~ 319 (366)
T TIGR03593 240 YQKVSFKDIEKKKLNVETKGGAGWVAMLQHYFASAWIPQAGSDGTTAFYYGKKLGNNVYIAGFVSPPVTVAPGQSATIKS 319 (366)
T ss_pred EEECCHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCEEECCCCEEEEEE
T ss_conf 57746102221666421137752899731025899814788762378985035789728998516750557998168998
Q ss_pred EEEEECHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9885000278876322014631012333201103568999999998876320
Q gi|254780483|r 307 FLFAGAKEFPTIHHYEKDLAIPRFEMLIDWGWFYFIAKPMFMLMSYFYNLVG 358 (581)
Q Consensus 307 ~lY~GPk~~~~L~~~~~~l~~~~l~~~vd~Gwf~~i~kplf~~L~~l~~~i~ 358 (581)
++|+|||+|++|++|+.+ ||++||||||+||+|||||+|+|||++||
T Consensus 320 ~~y~GPk~~~~L~~~~~~-----L~~~Vd~Gwf~~iakPlf~~L~~~~~~vG 366 (366)
T TIGR03593 320 RLYAGPKEQDVLKAIAPG-----LDLAVDYGWLWFIAKPLFWLLDFIHSLVG 366 (366)
T ss_pred EEEECCCCHHHHHHHHCC-----CCEEEECCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 999874709999867509-----32699853299999999999999897519
No 12
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=100.00 E-value=0 Score=421.19 Aligned_cols=213 Identities=24% Similarity=0.410 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH----
Q ss_conf 0356899999999887632---0163----9999999999998889999999999988877888999997314511----
Q gi|254780483|r 339 FYFIAKPMFMLMSYFYNLV---GNFG----IAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQSP---- 407 (581)
Q Consensus 339 f~~i~kplf~~L~~l~~~i---~NyG----iaIIllTilikli~~PLt~ks~~Sm~kM~~lqP~i~~i~ekyk~d~---- 407 (581)
++++.-|.-+++.+.+... .-+| +|||++|++||++++|+|.||+.|+.|||++|||++||+|||||++
T Consensus 132 yg~fV~P~a~i~~~~~~~~~~~~~~g~~~i~ai~~~~~ivrli~~~~t~kst~~q~KMqeiQpK~akIqaKYK~~kkD~q 211 (392)
T PRK02201 132 YGLFVYPIAQILLWVAAPLSLDELYGWSTILAILVLVLIIRLITFLITFKSTFNQEKMQELQGKKAKINAKYKDAKKDKQ 211 (392)
T ss_pred EEEEHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
T ss_conf 58842347999877522565776555999999999999999999887699997699999862789999987356556999
Q ss_pred -HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHH
Q ss_conf -5678999999985048786788999999999999999999876986288753410000335725666764102222027
Q gi|254780483|r 408 -PQVLQKAMIQLYKTHNINPLAGCWPILLQIPVFFAIYKVISISLEMRHAPFWGWIKDLAAADPTNIFTLFGILPFYLPG 486 (581)
Q Consensus 408 -~~~~~~e~m~ly~~~~vnP~~GClP~l~q~p~~~a~~~~~~~~ielr~~~f~~Wi~dls~~d~~~~~~~~~~~p~~~~~ 486 (581)
+||||+|||+|||||||||+|||||+|+|||||||+|+++.++.|||+++| +|+ |||++|...+++ +..|+...
T Consensus 212 SkQKmQ~EMm~LYKK~gVNP~ggclPilIQmPIFfALYrVl~~~~elk~a~f-~gi-dLsat~w~~i~s--g~~~yl~l- 286 (392)
T PRK02201 212 MKQRKQLEIQELYKKHNISPFSPFAQIFVTLPIFLAIYRIVQSLPPIKVTTF-LGI-DLSATPWQEIFA--GNWIYLPI- 286 (392)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCE-EEE-ECCCCCHHHHCC--CCCHHHHH-
T ss_conf 9999999999999983999157778899997899999999961376612403-200-004687354314--66258989-
Q ss_pred HHHHHHHHHHHHHHHHHHHHC----CCCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999999999752----88774--------689999999968999999987879999999999999999999
Q gi|254780483|r 487 FMHVGIWPIIMSLSMFIQMKM----SPPPA--------DKGQAMILNWMPVVFVFALSSFPAGLIIYWSWSNVISIVQQA 554 (581)
Q Consensus 487 ~~~~~ilp~l~~~~m~~~~k~----~p~~~--------d~~q~~~~~~mp~~~~~~~~~~~~gl~~y~~~~~~~~~~qq~ 554 (581)
+.+..+++.++|+++|-+ ++..+ ++.|++||.+||+||+|+..+|||||++||++||+++|+||+
T Consensus 287 ---lil~~~~q~lS~~lpq~L~~kk~~~~~~~~~~~~q~kkq~~m~~impiVF~f~~i~fPAGL~lYWiinNi~tIiQtl 363 (392)
T PRK02201 287 ---LIVVVPVQILSQKLPQILAKKKNKNRTNVEEKNESLKKQNRTQNIVSIVFIFIGVIFAAGVQIYWIFGGIFTILQTY 363 (392)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---99999999999999999741147877783012477899999999999999999988765775687760299998787
Q ss_pred HHHHH
Q ss_conf 99874
Q gi|254780483|r 555 VIMKM 559 (581)
Q Consensus 555 ~i~~~ 559 (581)
+|..-
T Consensus 364 iI~~~ 368 (392)
T PRK02201 364 GIHYF 368 (392)
T ss_pred HEEEE
T ss_conf 21666
No 13
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=100.00 E-value=0 Score=395.73 Aligned_cols=179 Identities=49% Similarity=0.960 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 16399999999999988899999999999888778889999973145115678999999985048786788999999999
Q gi|254780483|r 359 NFGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQSPPQVLQKAMIQLYKTHNINPLAGCWPILLQIP 438 (581)
Q Consensus 359 NyGiaIIllTilikli~~PLt~ks~~Sm~kM~~lqP~i~~i~ekyk~d~~~~~~~e~m~ly~~~~vnP~~GClP~l~q~p 438 (581)
|||+|||++|+++|++++|++.+|.++++||+.+|||+++||||||+|+ +++|+|+|+|||||||||++||+|+|+|+|
T Consensus 1 nW~~sIi~~ti~vR~~~~Pl~i~~~~~~~km~~i~Pe~~~i~~k~~~~~-~~~~~~~~~lykk~~v~p~~~~l~~liQiP 79 (181)
T TIGR03592 1 NWGLAIILLTIIIRLILLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDP-QKLQQEMMKLYKEEGVNPLGGCLPLLIQMP 79 (181)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9748999999999999999999999999999986888999875464668-999999999999848676788999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCHHHH
Q ss_conf 9999999998769862887534100003357256667641022220278999999999999999997528877-468999
Q gi|254780483|r 439 VFFAIYKVISISLEMRHAPFWGWIKDLAAADPTNIFTLFGILPFYLPGFMHVGIWPIIMSLSMFIQMKMSPPP-ADKGQA 517 (581)
Q Consensus 439 ~~~a~~~~~~~~ielr~~~f~~Wi~dls~~d~~~~~~~~~~~p~~~~~~~~~~ilp~l~~~~m~~~~k~~p~~-~d~~q~ 517 (581)
||+++|++++...++.+++| +|++|||.+||++ +||+++++++++++++++.. .++.|+
T Consensus 80 i~~~l~~~l~~~~~l~~~~f-lw~~dLt~~dp~~-------------------iLP~~~~~~~~~~~~~~~~~~~~~~~~ 139 (181)
T TIGR03592 80 IFIALYQVLRRSIELRHAPF-LWIKDLSAPDPYY-------------------ILPILMGVTMFLQQKLSPKGPPDPAQQ 139 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCHHH-------------------HHHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 99999999998588765123-2045038864799-------------------999999999999999537899998999
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999-9689999999878799999999999999999999987
Q gi|254780483|r 518 MILN-WMPVVFVFALSSFPAGLIIYWSWSNVISIVQQAVIMK 558 (581)
Q Consensus 518 ~~~~-~mp~~~~~~~~~~~~gl~~y~~~~~~~~~~qq~~i~~ 558 (581)
|+|. +||++++++..++|||+.+||++||+++++||++++|
T Consensus 140 k~~~~~~p~~~~~~~~~~P~al~lYw~~s~~~~i~Q~~il~r 181 (181)
T TIGR03592 140 KIMMYIMPLMFLFFFLSFPAGLVLYWVVSNLFTIIQQLIINR 181 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999979999999999989999999999739
No 14
>pfam02096 60KD_IMP 60Kd inner membrane protein.
Probab=100.00 E-value=0 Score=367.29 Aligned_cols=182 Identities=51% Similarity=0.944 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 01639999999999998889999999999988877888999997314511567899999998504878678899999999
Q gi|254780483|r 358 GNFGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQSPPQVLQKAMIQLYKTHNINPLAGCWPILLQI 437 (581)
Q Consensus 358 ~NyGiaIIllTilikli~~PLt~ks~~Sm~kM~~lqP~i~~i~ekyk~d~~~~~~~e~m~ly~~~~vnP~~GClP~l~q~ 437 (581)
||||+||+++|++||++++|++.+|.++++||+.+|||+++||||||+|+ +++++|||+|||||||||++||+|+|+|+
T Consensus 1 ~sw~~sI~~~ti~vR~i~lPl~~~~~~~~~k~~~l~Pe~~~i~~k~~~~~-~~~~~e~~~lyk~~g~~p~~~~l~~liQ~ 79 (194)
T pfam02096 1 GNWGLAIILLTILVRLLLLPLTLKQYKSMAKMQELQPEIKEIQEKYKDDP-QKLQQEMMKLYKEHGVNPLKGCLPMLIQL 79 (194)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 96128999999999999999999999999999982586899987661447-99999999999994836788877899999
Q ss_pred HHHHHHHHHHHHHHHHCC---CCCCCCCCCCCCCC-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC--
Q ss_conf 999999999987698628---87534100003357-256667641022220278999999999999999997528877--
Q gi|254780483|r 438 PVFFAIYKVISISLEMRH---APFWGWIKDLAAAD-PTNIFTLFGILPFYLPGFMHVGIWPIIMSLSMFIQMKMSPPP-- 511 (581)
Q Consensus 438 p~~~a~~~~~~~~ielr~---~~f~~Wi~dls~~d-~~~~~~~~~~~p~~~~~~~~~~ilp~l~~~~m~~~~k~~p~~-- 511 (581)
|||+++|.+++...++.+ ++| +|++||+.+| |++ +||++++++++++++++...
T Consensus 80 Pif~~~~~~ir~~~~~~~~~~~~~-lw~~dLt~~D~~~~-------------------iLpii~~~~~~~~~~~~~~~~~ 139 (194)
T pfam02096 80 PIFFALYRVLRNMAELRGLETAGF-LWIKDLSAPDPPYF-------------------ILPILAGLTMFLQQKLSPKPQD 139 (194)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCC-CCCHHCCCCCCHHH-------------------HHHHHHHHHHHHHHHHCCCCCC
T ss_conf 999999999999998653002775-67020389860069-------------------9999999999999996656778
Q ss_pred -CCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf -468----9999999968999999987879999999999999999999998747
Q gi|254780483|r 512 -ADK----GQAMILNWMPVVFVFALSSFPAGLIIYWSWSNVISIVQQAVIMKMH 560 (581)
Q Consensus 512 -~d~----~q~~~~~~mp~~~~~~~~~~~~gl~~y~~~~~~~~~~qq~~i~~~~ 560 (581)
.++ .++.++.+||++++++..++|+||.+||++||+++++|+++++|..
T Consensus 140 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~Paal~lYW~~s~~~sl~Q~~il~~~~ 193 (194)
T pfam02096 140 PTDKQQSPQMKIMMYIMPLIFLFFFLNFPAGLVLYWIVSNLFSLVQQLLIRKPL 193 (194)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 776146899999999999999999997899999999998999999999981678
No 15
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=100.00 E-value=0 Score=357.62 Aligned_cols=197 Identities=23% Similarity=0.388 Sum_probs=139.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 1639999999999998889999999999988877888999997314511----567899999998504878678899999
Q gi|254780483|r 359 NFGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQSP----PQVLQKAMIQLYKTHNINPLAGCWPIL 434 (581)
Q Consensus 359 NyGiaIIllTilikli~~PLt~ks~~Sm~kM~~lqP~i~~i~ekyk~d~----~~~~~~e~m~ly~~~~vnP~~GClP~l 434 (581)
.||+|||+|||+||++++||+.||++||.+|+.|||||++||||||||+ ++++|+|||+|||+|||||++||||||
T Consensus 31 aW~lSIi~Lti~VR~il~Pl~~kq~kS~r~Mq~lqPemk~LqeKYk~~~d~~s~~emqqe~m~LyKe~gvNPlaGCLP~L 110 (422)
T PRK00247 31 AWFFSLFGLVITVRAIIAPFTWQMYKSGRTAAHIRPKRAALREEYKGRYDEASIRELQKRQKDLNKEYGINPLAGCVPGL 110 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHH
T ss_conf 99999999999999999977999999999999829589999998568846689999999999999981999632222378
Q ss_pred HHHHHHHHHHHHHHHHHHHCCC---------CCCCCCCCCCCCCHHHHHHHHHCCCC-------------CCHHH--HHH
Q ss_conf 9999999999999876986288---------75341000033572566676410222-------------20278--999
Q gi|254780483|r 435 LQIPVFFAIYKVISISLEMRHA---------PFWGWIKDLAAADPTNIFTLFGILPF-------------YLPGF--MHV 490 (581)
Q Consensus 435 ~q~p~~~a~~~~~~~~ielr~~---------~f~~Wi~dls~~d~~~~~~~~~~~p~-------------~~~~~--~~~ 490 (581)
+|||||||||+||...-.-.+. .| +=.+|..+..-..+ || .|. .+... .+.
T Consensus 111 iQiPvFigLY~VLl~~ar~~~G~~~~~~~~iG~-ls~~dV~SF~~A~l---FG-aPLsa~~sm~~e~la~lgtt~~~V~~ 185 (422)
T PRK00247 111 IQIPVVLGLYQVLLRMARPEGGLENPVFQSIGF-LTPEEVESFLAGRV---FN-VPLPAYVSMPTEQLAYLGTTQAEVLS 185 (422)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCHHHHHHHHHCHH---CC-CCCHHHHCCCHHHHHHCCCCCHHHHH
T ss_conf 862699999999998525567878888778776-89999999984713---38-72188745878888650787225789
Q ss_pred HHHHHHHHHHHHHHHHC--C----CCC-------CCHHHHH--HH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999752--8----877-------4689999--99-9968999999987--8799999999999999999
Q gi|254780483|r 491 GIWPIIMSLSMFIQMKM--S----PPP-------ADKGQAM--IL-NWMPVVFVFALSS--FPAGLIIYWSWSNVISIVQ 552 (581)
Q Consensus 491 ~ilp~l~~~~m~~~~k~--~----p~~-------~d~~q~~--~~-~~mp~~~~~~~~~--~~~gl~~y~~~~~~~~~~q 552 (581)
-++|++|.++.|..+.+ + .+. +-++++. +| ++||++.+++-.+ ||-|+.+||++||+.|++|
T Consensus 186 vvlplli~As~fTt~n~~~S~~R~~~t~d~~s~~~~~m~k~m~~m~~l~Pvfpl~~gv~GpFPVaVLlYW~tnNlWTmGQ 265 (422)
T PRK00247 186 FVLPLFITAAVFTAINMAMSTYRSFQTNDYASGFSNGMLKFMIVMSILAPIFPLSLGLTGPFPTAIALYWVANNLWTLLQ 265 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHCCHHHHHH
T ss_conf 99999999999999999999986422332121221468999999999999999999964886336324645203888866
Q ss_pred HHHHHHHC
Q ss_conf 99998747
Q gi|254780483|r 553 QAVIMKMH 560 (581)
Q Consensus 553 q~~i~~~~ 560 (581)
|.++.+-+
T Consensus 266 Q~~m~~i~ 273 (422)
T PRK00247 266 TIIMMVIL 273 (422)
T ss_pred HHHEEEEE
T ss_conf 45302555
No 16
>KOG1239 consensus
Probab=99.82 E-value=1.6e-18 Score=153.67 Aligned_cols=196 Identities=20% Similarity=0.341 Sum_probs=160.4
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-----H
Q ss_conf 201103568999999998876320-1639999999999998889999999999988877888999997314511-----5
Q gi|254780483|r 335 DWGWFYFIAKPMFMLMSYFYNLVG-NFGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQSP-----P 408 (581)
Q Consensus 335 d~Gwf~~i~kplf~~L~~l~~~i~-NyGiaIIllTilikli~~PLt~ks~~Sm~kM~~lqP~i~~i~ekyk~d~-----~ 408 (581)
.++|++..+. |=..|..+|.+-| +|+..|+.-|+.||.+.+|+-.++.+..+|+..+.|+|.++.++.++-. .
T Consensus 77 ~~~~~~p~~~-lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~~~~~~ 155 (372)
T KOG1239 77 ALSSWRPVAT-LQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQDNNAL 155 (372)
T ss_pred HHCCCCCHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCH
T ss_conf 7326674248-899999999970886137888767667654556777401577887623701278898887631133136
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----CCCCCCCCCCCHHHHHHHHHCCCCCC
Q ss_conf 67899999998504878678899999999999999999987698628875----34100003357256667641022220
Q gi|254780483|r 409 QVLQKAMIQLYKTHNINPLAGCWPILLQIPVFFAIYKVISISLEMRHAPF----WGWIKDLAAADPTNIFTLFGILPFYL 484 (581)
Q Consensus 409 ~~~~~e~m~ly~~~~vnP~~GClP~l~q~p~~~a~~~~~~~~ielr~~~f----~~Wi~dls~~d~~~~~~~~~~~p~~~ 484 (581)
...|+||++++++|||+| -.-.=+++|.|+|+++|..++... .-..+| .+|.+||+.+||++
T Consensus 156 ~~~q~~~~~l~~~~~v~~-~~l~~~v~q~~l~~sff~air~ma-~~v~~f~t~g~~wf~dLt~~dp~~------------ 221 (372)
T KOG1239 156 LSWQEEQKLLVKKYGVKP-KQLALPVVQGPLFISFFMAIRVMA-VPVPSFTTGGLLWFPDLTGPDPLY------------ 221 (372)
T ss_pred HHHHHHHHHHHHHCCCCC-CHHHHHHHCCHHHHHHHHHHHHHH-CCCCCCCHHHHHHCCCCCCCCCCH------------
T ss_conf 888899986455438884-045565410114788999998764-266664125677411466667303------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 27899999999999999999752887------7468999999996899999998787999999999999999999999
Q gi|254780483|r 485 PGFMHVGIWPIIMSLSMFIQMKMSPP------PADKGQAMILNWMPVVFVFALSSFPAGLIIYWSWSNVISIVQQAVI 556 (581)
Q Consensus 485 ~~~~~~~ilp~l~~~~m~~~~k~~p~------~~d~~q~~~~~~mp~~~~~~~~~~~~gl~~y~~~~~~~~~~qq~~i 556 (581)
++|++++++|..-.+++-. ..-|.-..++.++|+..+.+..+||+++..||+ ++.+|-.++
T Consensus 222 -------ilp~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~t~~~~~a~~~ywl----~s~~~~~vl 288 (372)
T KOG1239 222 -------ILPGITLATLTLFIELGAETGLSSSKLLPAMKSFIRILPLLSLASTMQFPSAIFVYWL----FSLVQGLVL 288 (372)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_conf -------6678999999999998777643102346025889987353212544210346776442----677777775
No 17
>KOG1239 consensus
Probab=96.94 E-value=0.0018 Score=43.77 Aligned_cols=200 Identities=18% Similarity=0.147 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 632016399999999999988899999999999888778889999973145115-6789999999850487867889999
Q gi|254780483|r 355 NLVGNFGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQSPP-QVLQKAMIQLYKTHNINPLAGCWPI 433 (581)
Q Consensus 355 ~~i~NyGiaIIllTilikli~~PLt~ks~~Sm~kM~~lqP~i~~i~ekyk~d~~-~~~~~e~m~ly~~~~vnP~~GClP~ 433 (581)
+..+-+|.++++.|+++++..+|++..+-.|+--|...+|-+..+...+....+ -.+|.+.+.+|+-.|.++.+||.+-
T Consensus 30 s~~~~~~~~~~~~t~~~~~~~~p~~~~~~~s~~v~~~~~~~~~~~~~~~~~~~p~~~lq~~l~~~h~~~g~pww~~i~~~ 109 (372)
T KOG1239 30 SSPGFSGFSVFLRTILVKLTNSPLSQPEASSTSVVATVSPIIEGILLALSSWRPVATLQNELERLHVYSGLPWWASIVAT 109 (372)
T ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 66776654401035410146688776766405788761316778887732667424889999999997088613788876
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC------CCCHHHHHHHH-----HCCCCCCH---HHHHHHHHHHHHHH
Q ss_conf 999999999999998769862887534100003------35725666764-----10222202---78999999999999
Q gi|254780483|r 434 LLQIPVFFAIYKVISISLEMRHAPFWGWIKDLA------AADPTNIFTLF-----GILPFYLP---GFMHVGIWPIIMSL 499 (581)
Q Consensus 434 l~q~p~~~a~~~~~~~~ielr~~~f~~Wi~dls------~~d~~~~~~~~-----~~~p~~~~---~~~~~~ilp~l~~~ 499 (581)
.+-+|..+..+.+.....+-|-..-..|++-+. +.|.-..+.+- +..++..+ .-..+...|+--+-
T Consensus 110 t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~~~l~~~~~v~~~~l~~~v~q~~l~~sf 189 (372)
T KOG1239 110 TVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQDNNALLSWQEEQKLLVKKYGVKPKQLALPVVQGPLFISF 189 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHH
T ss_conf 76676545567774015778876237012788988876311331368888999864554388840455654101147889
Q ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999997528877468999999996899999998787999999999999999999999
Q gi|254780483|r 500 SMFIQMKMSPPPADKGQAMILNWMPVVFVFALSSFPAGLIIYWSWSNVISIVQQAVI 556 (581)
Q Consensus 500 ~m~~~~k~~p~~~d~~q~~~~~~mp~~~~~~~~~~~~gl~~y~~~~~~~~~~qq~~i 556 (581)
.|-+..-.-|.+.++++ ...|.|-+-...-..-..|++.||+.+++..=.|+-.-
T Consensus 190 f~air~ma~~v~~f~t~--g~~wf~dLt~~dp~~ilp~it~~~~~~~~~~~~~~~~~ 244 (372)
T KOG1239 190 FMAIRVMAVPVPSFTTG--GLLWFPDLTGPDPLYILPGITLATLTLFIELGAETGLS 244 (372)
T ss_pred HHHHHHHHCCCCCCCHH--HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998764266664125--67741146666730366789999999999987776431
No 18
>COG1422 Predicted membrane protein [Function unknown]
Probab=96.80 E-value=0.017 Score=36.73 Aligned_cols=86 Identities=15% Similarity=0.272 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CH--HHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 16399999999999988899999999999888778889999973145-----11--567899999998504878678899
Q gi|254780483|r 359 NFGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQ-----SP--PQVLQKAMIQLYKTHNINPLAGCW 431 (581)
Q Consensus 359 NyGiaIIllTilikli~~PLt~ks~~Sm~kM~~lqP~i~~i~ekyk~-----d~--~~~~~~e~m~ly~~~~vnP~~GCl 431 (581)
+.-|+|+++.+++-+.. -+-+|=..-..||+++|-+++|.||+++. |. -+|+|++.|+.-....==..--.-
T Consensus 45 ~p~lvilV~avi~gl~~-~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~qfk 123 (201)
T COG1422 45 PPHLVILVAAVITGLYI-TILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQFK 123 (201)
T ss_pred CCHHHHHHHHHHHHHHH-HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 62899999999999999-99999960299999999999999999999998088999999999999999999999998641
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999999
Q gi|254780483|r 432 PILLQIPVFFAIYK 445 (581)
Q Consensus 432 P~l~q~p~~~a~~~ 445 (581)
||+.++++-|-+|.
T Consensus 124 PM~~~~v~tI~~F~ 137 (201)
T COG1422 124 PMLYISVLTIPFFA 137 (201)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 58999999999999
No 19
>pfam01956 DUF106 Integral membrane protein DUF106. This archaebacterial protein family has no known function. Members are predicted to be integral membrane proteins.
Probab=95.51 E-value=0.21 Score=28.73 Aligned_cols=63 Identities=25% Similarity=0.267 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHH---HHHHHHHHHHCCCCHHHHHHH----HHHHHHHHHHHHHHHH
Q ss_conf 99999888778889999973145115678---999999985048786788999----9999999999999998
Q gi|254780483|r 383 YVSTANMKNIQPKIDELREKFKQSPPQVL---QKAMIQLYKTHNINPLAGCWP----ILLQIPVFFAIYKVIS 448 (581)
Q Consensus 383 ~~Sm~kM~~lqP~i~~i~ekyk~d~~~~~---~~e~m~ly~~~~vnP~~GClP----~l~q~p~~~a~~~~~~ 448 (581)
-+-..+|+.+|=+.+++++....-+.+++ |.|+|+..++- -+..--| |++|+|||.-++++|.
T Consensus 43 ~~~q~~~~~~~~~~~~l~~~~~~~~~~k~~~~q~~~~~~q~~m---m~~~mK~~~~~~i~~i~i~~wi~~~f~ 112 (168)
T pfam01956 43 EKYKKRMKEIQKRARELRKNGDKLSPKKFEKRQEELMEDQKEM---MMDMMKPNFAIMIPQILIFGWINSFFS 112 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999987689557899999999988848999---999777779999999999999999924
No 20
>PRK11055 galM aldose 1-epimerase; Provisional
Probab=93.75 E-value=0.53 Score=25.76 Aligned_cols=122 Identities=11% Similarity=0.124 Sum_probs=64.1
Q ss_pred CCCEEEEECCE-EEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCEEEE---ECCC--------------
Q ss_conf 58728997664-99999769955999995357134478877268854566655310000---0134--------------
Q gi|254780483|r 67 MSPRVELKNPS-LIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTKNAYFAEL---DYVS-------------- 128 (581)
Q Consensus 67 ~~~~I~Iend~-l~i~is~~GG~I~~~~LK~Y~~~~~~ds~~v~Ll~~~~~~~~y~~~~---G~~~-------------- 128 (581)
....++++|+. ++++|.+.||.|.++.+++=. .....|.|-. ++. ..|.... |-+.
T Consensus 14 ~v~~~tL~N~~g~~v~i~n~GA~i~s~~vpd~~----G~~~dvVLG~-d~~-e~Y~~~~~y~GatiGR~AnRI~~g~f~l 87 (348)
T PRK11055 14 PYRLLTLRNNAGMVVTLMDWGATWLSCRVPLSD----GEVREVLLGC-ASP-EDYPDQAAYLGASVGRYANRIANSRFTL 87 (348)
T ss_pred EEEEEEEECCCCCEEEEECCCCEEEEEEEECCC----CCEEEEEECC-CCH-HHHHCCCCCCCCCCCCCCCEEECCEEEE
T ss_conf 999999987999599998878199999979888----9885349789-998-9984188841668056467253887988
Q ss_pred CCCCCCCC--------------CCCCCEECCCCCCCCCCCCCEEEEECC-------CCEEEEEEEEECCCCEEEEEEEEC
Q ss_conf 78775433--------------343210015666566666504774158-------842699999716883589998631
Q gi|254780483|r 129 TANNIELP--------------NSNTVWNLISGKILTPTTPIKLVFKNA-------NNILFERTISLDEHYLFKIVDTVT 187 (581)
Q Consensus 129 ~~~~~~~p--------------~~~~~~~~~~~~~l~~~~~v~l~~~~~-------~g~~i~kt~t~~~~Y~i~i~~~v~ 187 (581)
.+....++ .+.-.|++.. .++..|+|++... ..+.++-+|++.++-.+.++++-+
T Consensus 88 dg~~y~L~~N~g~n~LHGG~~Gf~~~~W~v~~----~~~~~V~f~~~s~dge~GfPG~l~v~vtY~L~~~n~L~I~y~A~ 163 (348)
T PRK11055 88 DGETYQLSPNQGGNQLHGGPEGFDKRRWQIVN----QNDRQVTFSLSSPDGDQGFPGNLGVTVQYRLTDDNRVSITYRAT 163 (348)
T ss_pred CCEEEEECCCCCCCEECCCCCCCCCEEEEEEC----CCCCEEEEEEECCCCCCCCCCEEEEEEEEEEECCCEEEEEEEEE
T ss_conf 99899825788983207897765525899952----78998999998876567887039999999990499799999999
Q ss_pred CCCCCCCCCCC
Q ss_conf 57666422242
Q gi|254780483|r 188 NNSIDQIRFSP 198 (581)
Q Consensus 188 N~s~~~i~~~~ 198 (581)
-....++++..
T Consensus 164 td~~T~~NlTn 174 (348)
T PRK11055 164 VDKPCPVNLTN 174 (348)
T ss_pred ECCCCEEECCC
T ss_conf 08983642256
No 21
>pfam01263 Aldose_epim Aldose 1-epimerase.
Probab=92.44 E-value=0.8 Score=24.42 Aligned_cols=124 Identities=22% Similarity=0.327 Sum_probs=64.7
Q ss_pred CEEEEECCE-EEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCEEE-------EECC----------CCC
Q ss_conf 728997664-9999976995599999535713447887726885456665531000-------0013----------478
Q gi|254780483|r 69 PRVELKNPS-LIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTKNAYFAE-------LDYV----------STA 130 (581)
Q Consensus 69 ~~I~Iend~-l~i~is~~GG~I~~~~LK~Y~~~~~~ds~~v~Ll~~~~~~~~y~~~-------~G~~----------~~~ 130 (581)
+.++++|+. ++++|.+.||.|.++++++ +..+ +.|-.++ ...|... .|-. ..+
T Consensus 1 ~l~tL~n~~g~~v~i~~~GA~l~s~~~~~------~~~~-vvlg~~~--~~~y~~~~~~~Ga~iGr~anRI~~g~~~~~G 71 (301)
T pfam01263 1 DLITLKNGNGLSATISLYGATLLSLKVPD------KGEE-VLLGSDD--ADGYLKDANYFGATLGRYANRIANGRFELDG 71 (301)
T ss_pred CEEEEECCCCCEEEEECCCCEEEEEEECC------CCCC-EEECCCC--HHHHHCCCCCCCCCCCCCCCEEECCEEEECC
T ss_conf 97999879986999988792999999899------2852-3886899--8998308674152627877740897396999
Q ss_pred CCCCCCCC------------CCCEECCCCCCCCCCCCCEEEEE-CC-----CCEEEEEEEEECCCCEEEEEEEECCCC-C
Q ss_conf 77543334------------32100156665666665047741-58-----842699999716883589998631576-6
Q gi|254780483|r 131 NNIELPNS------------NTVWNLISGKILTPTTPIKLVFK-NA-----NNILFERTISLDEHYLFKIVDTVTNNS-I 191 (581)
Q Consensus 131 ~~~~~p~~------------~~~~~~~~~~~l~~~~~v~l~~~-~~-----~g~~i~kt~t~~~~Y~i~i~~~v~N~s-~ 191 (581)
....++.. ...|++..... .++..+++... ++ ..+.++-+|+++++..+.++++++|.+ .
T Consensus 72 ~~y~l~~N~~g~~~lHGg~~~~~W~~~~~~~-~~~~~~~~~~~~~~~~gyPg~~~~~v~y~L~~~~~l~i~~~a~~~~~~ 150 (301)
T pfam01263 72 KPYQLPQNGPGKNPLHGGARGRIWEVEEVKP-DDGVTVSLVLDPDGEEGYPGDLEVRVTYTLNEDNELTIEYEATNDGKP 150 (301)
T ss_pred EEEECCCCCCCCCEECCCCCCEEEEEEEECC-CCCEEEEEEECCCCCCCCCEEEEEEEEEEECCCCEEEEEEEEEECCCC
T ss_conf 8998646899975203676762778899628-985899999878744698637999999999379989999999968988
Q ss_pred CCCCCC--CCEEE
Q ss_conf 642224--21012
Q gi|254780483|r 192 DQIRFS--PRGRI 202 (581)
Q Consensus 192 ~~i~~~--~~~~i 202 (581)
.++.+. +|..+
T Consensus 151 tp~n~t~H~YFnl 163 (301)
T pfam01263 151 TPFNLGNHPYFNL 163 (301)
T ss_pred EEEEECCCCEEEC
T ss_conf 5787026446845
No 22
>pfam00558 Vpu Vpu protein. The Vpu protein contains an N-terminal transmembrane spanning region and a C-terminal cytoplasmic region. The HIV-1 Vpu protein stimulates virus production by enhancing the release of viral particles from infected cells. The VPU protein binds specifically to CD4.
Probab=92.30 E-value=0.83 Score=24.30 Aligned_cols=68 Identities=16% Similarity=0.447 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--HHH-HHHHHHHHHHHHCCC-CHH
Q ss_conf 63999999999999888999999999998887788899999731451--156-789999999850487-867
Q gi|254780483|r 360 FGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQS--PPQ-VLQKAMIQLYKTHNI-NPL 427 (581)
Q Consensus 360 yGiaIIllTilikli~~PLt~ks~~Sm~kM~~lqP~i~~i~ekyk~d--~~~-~~~~e~m~ly~~~~v-nP~ 427 (581)
.|+.+++..+++-++.|-..++-|+--+|=|++--.++.|+||-.|- ... .-.++.|+|--.+|. |||
T Consensus 7 ~~ii~l~v~liiaIvVW~iv~~ey~k~~rqrkI~~l~~RIrEraEDSgnES~Gd~Ee~L~~Lv~~~gfdnPm 78 (81)
T pfam00558 7 IGLIALIVALIINIVVWTIVYREYRKIKKQREILRLIKRIRERAEDSGNESNGDEEEELADLVHSHGFDNPM 78 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 999999999999999999999999999999999999999999603678878870889999998807998755
No 23
>pfam07423 DUF1510 Protein of unknown function (DUF1510). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=91.34 E-value=0.28 Score=27.74 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 89999999999999997513789887654
Q gi|254780483|r 6 NYFVAIALSVIIVYAWQNFYVYPRIEEMN 34 (581)
Q Consensus 6 n~iIai~Ls~~ill~w~~~~~~p~~e~~~ 34 (581)
|++|++++.++++++|+.|+.....++..
T Consensus 17 NiaI~iV~llIiiva~~lf~~~~~~~~~~ 45 (214)
T pfam07423 17 NIAIGIVVVLIIIVAYQLFFPSSPSDQAA 45 (214)
T ss_pred HHHHHHHHHHHHHHHHHEEECCCCCCCCC
T ss_conf 79999999999997664023588753211
No 24
>pfam09973 DUF2208 Predicted membrane protein (DUF2208). This domain, found in various hypothetical archaeal proteins, has no known function.
Probab=89.12 E-value=1.6 Score=22.29 Aligned_cols=97 Identities=14% Similarity=0.267 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHHH---HHHHH-----HHHHHCCCCHHHHH
Q ss_conf 68999999998876320163999999-999999888999999999-9988877---88899-----99973145115678
Q gi|254780483|r 342 IAKPMFMLMSYFYNLVGNFGIAIMLT-TVFVKLLFFPLAKKQYVS-TANMKNI---QPKID-----ELREKFKQSPPQVL 411 (581)
Q Consensus 342 i~kplf~~L~~l~~~i~NyGiaIIll-Tilikli~~PLt~ks~~S-m~kM~~l---qP~i~-----~i~ekyk~d~~~~~ 411 (581)
|++-...+....-++.|.|=+-++++ =|++=.+..-.+.+||+| .+-++++ +|-++ ++.|| |+ .+
T Consensus 6 iSqvsillfs~Vlsf~Pqyy~~~filYfiif~~is~~~~~Rs~~~~~~~~~Ei~~gr~L~eEk~a~kl~~k---D~--el 80 (232)
T pfam09973 6 ISQVSILLFSAVLSFYPQYYLEVFILYFIIFMGIMIVMTLRSNRSERKSLQEISSGRTLYEEKEANKLVEK---DE--EL 80 (232)
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCHHHHHHHH---CH--HH
T ss_conf 99999999999998763889999999999999999999865265568877787336864462206789873---79--99
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999850487867889999999999999999998769
Q gi|254780483|r 412 QKAMIQLYKTHNINPLAGCWPILLQIPVFFAIYKVISISL 451 (581)
Q Consensus 412 ~~e~m~ly~~~~vnP~~GClP~l~q~p~~~a~~~~~~~~i 451 (581)
++|+++.-|+.=.+ |+-+|+++.++.++...+
T Consensus 81 ~~e~~~~~kas~~~--------ll~l~i~ii~~~l~~~~v 112 (232)
T pfam09973 81 TKELKAQAKASMSP--------LLILPIYIIVFFLLYPFV 112 (232)
T ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHCC
T ss_conf 99999999999888--------899999999999987211
No 25
>pfam06936 Selenoprotein_S Selenoprotein S (SelS). This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. The function of this family is unknown.
Probab=84.92 E-value=2.6 Score=20.68 Aligned_cols=51 Identities=25% Similarity=0.382 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------H----HHHHHHHHHHHHHHCCCC
Q ss_conf 632016399999999999988899999999999---------------------8----887788899999731451
Q gi|254780483|r 355 NLVGNFGIAIMLTTVFVKLLFFPLAKKQYVSTA---------------------N----MKNIQPKIDELREKFKQS 406 (581)
Q Consensus 355 ~~i~NyGiaIIllTilikli~~PLt~ks~~Sm~---------------------k----M~~lqP~i~~i~ekyk~d 406 (581)
.|+.+|||=|++..|++=+|.--|... .+++. + =+.+|-+.++--|+|+.-
T Consensus 31 ~~l~~YGWyiL~~~v~ly~l~qkL~~~-~~~~~~r~~~~~~~~~dPd~v~~RQEam~aAR~RmQee~dA~A~~~~ek 106 (190)
T pfam06936 31 ELLSKYGWYLLLGCVGIYLLIQKLRPR-WRSLQKRSSEKEITVFDPDKVVRRQEALEAARLRMQEDLDAKAAKFKEK 106 (190)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999963779999999999999987199-9988740244310005989999999999999999999999999999999
No 26
>PRK09108 type III secretion system protein HrcU; Validated
Probab=81.61 E-value=3.5 Score=19.77 Aligned_cols=39 Identities=15% Similarity=0.279 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999988899999999999888778889999973145
Q gi|254780483|r 362 IAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQ 405 (581)
Q Consensus 362 iaIIllTilikli~~PLt~ks~~Sm~kM~~lqP~i~~i~ekyk~ 405 (581)
+.++++.++|=++=|+.+...|..--||-+ +|+|+.||+
T Consensus 190 ~~~~~~~~via~~D~~~qr~~~~k~LkMSk-----qEvK~E~K~ 228 (354)
T PRK09108 190 AVAALVFLVVGAADWKIQRWLFIRDNRMSK-----DEVKREHKE 228 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-----HHHHHHHHH
T ss_conf 999999999999999999999999738998-----999999886
No 27
>TIGR01185 devC DevC protein; InterPro: IPR005891 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis { suggest that this protein, along with DevA and DevB encoded in the same operon, may be involved in the transport/export of glycolipids.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane.
Probab=81.16 E-value=2.5 Score=20.85 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=32.1
Q ss_pred HHHHHCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3332011---0356899999999887632016399999999999988899999
Q gi|254780483|r 332 MLIDWGW---FYFIAKPMFMLMSYFYNLVGNFGIAIMLTTVFVKLLFFPLAKK 381 (581)
Q Consensus 332 ~~vd~Gw---f~~i~kplf~~L~~l~~~i~NyGiaIIllTilikli~~PLt~k 381 (581)
++|.||= +|.|-+ --+|=-.=+|.|+|+++|||-+---|.-..|+--.
T Consensus 296 KAIGY~~~YLLGV~lQ--EALLLA~~GyLP~~~l~i~LY~~~~~AT~LP~~M~ 346 (381)
T TIGR01185 296 KAIGYTDKYLLGVVLQ--EALLLAVLGYLPSFVLAILLYTTARRATLLPLIMS 346 (381)
T ss_pred HHCCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 3203442246788999--99999998751689999999876577623714756
No 28
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=79.98 E-value=3.9 Score=19.39 Aligned_cols=33 Identities=12% Similarity=0.386 Sum_probs=24.1
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCH
Q ss_conf 8889999973145115678999999985048786
Q gi|254780483|r 393 QPKIDELREKFKQSPPQVLQKAMIQLYKTHNINP 426 (581)
Q Consensus 393 qP~i~~i~ekyk~d~~~~~~~e~m~ly~~~~vnP 426 (581)
+=++++-+....++| +...+|+.++|++.|..|
T Consensus 82 ~~e~~rE~~ei~~~p-~~E~~El~~iy~~kG~~~ 114 (234)
T cd02433 82 EASIPDERRELRKHP-LEEAAELALIYRAKGLDE 114 (234)
T ss_pred HHHHHHHHHHHHHCH-HHHHHHHHHHHHHCCCCH
T ss_conf 988999999985095-889999999998769998
No 29
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=79.09 E-value=0.48 Score=26.03 Aligned_cols=140 Identities=16% Similarity=0.180 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHH------------HHHHHH
Q ss_conf 999999888999--999999998887788899999731451156789999999850487867------------889999
Q gi|254780483|r 368 TVFVKLLFFPLA--KKQYVSTANMKNIQPKIDELREKFKQSPPQVLQKAMIQLYKTHNINPL------------AGCWPI 433 (581)
Q Consensus 368 Tilikli~~PLt--~ks~~Sm~kM~~lqP~i~~i~ekyk~d~~~~~~~e~m~ly~~~~vnP~------------~GClP~ 433 (581)
+|++=.|+--|- =-..+|++-|++ ||++|=+|-+|-+||+=+|- .|.=|+
T Consensus 575 AIILLTIiIRLLLfPLt~KQ~KSMkK----------------MQeLQPeMkEIQEKYKdDpQKlQqEMMKLYKE~GVNPL 638 (791)
T PRK01001 575 SIILLTVFLKLLLYPLNAWSIRSMRR----------------MQKLSPYIQEIQQKYKKEPKRAQMEIMALYKTNKVNPI 638 (791)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCH
T ss_conf 99999999999998405899999999----------------98868899999988079999999999999987099915
Q ss_pred HHHHHHHHHH--HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCC--C-----CCCHHHHHHHHHHH-HHHHHHHH
Q ss_conf 9999999999--9999876986288753410000335725666764102--2-----22027899999999-99999999
Q gi|254780483|r 434 LLQIPVFFAI--YKVISISLEMRHAPFWGWIKDLAAADPTNIFTLFGIL--P-----FYLPGFMHVGIWPI-IMSLSMFI 503 (581)
Q Consensus 434 l~q~p~~~a~--~~~~~~~ielr~~~f~~Wi~dls~~d~~~~~~~~~~~--p-----~~~~~~~~~~ilp~-l~~~~m~~ 503 (581)
==-+|+++-+ |..|... ||. ++ +|-... ++..|.-.+ | +..|.+ .++ .|+ +.-+.|-+
T Consensus 639 gGCLPLLIQMPIFIALY~V--L~~-si-----eLRgAs--FL~gWI~DLSaPD~lF~~~~Pi~-flG-~p~~ILPILmgv 706 (791)
T PRK01001 639 TGCLPLLIQLPFLIAMFDL--LKS-SF-----LLRGAS--FIPGWIDNLTAPDVLFSWETPIW-FIG-NEFHLLPILLGI 706 (791)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHH-HH-----HHCCCC--CHHHHHHHCCCCCCCCCCCCCCC-CCC-CCHHHHHHHHHH
T ss_conf 6678999999999999999--998-88-----751893--05657764557774555677631-135-507799999999
Q ss_pred HHHCCCCCCCH-------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97528877468-------999999996899999998787
Q gi|254780483|r 504 QMKMSPPPADK-------GQAMILNWMPVVFVFALSSFP 535 (581)
Q Consensus 504 ~~k~~p~~~d~-------~q~~~~~~mp~~~~~~~~~~~ 535 (581)
.|-++..-+-+ .|++.|+.|..+|.+||..+-
T Consensus 707 tMFLQQKmS~~k~~gP~t~qq~QQKmMm~mMPLmF~fif 745 (791)
T PRK01001 707 VMFLQQKISALKKKGPVTDQQRQQEAMGTMMALLFTFMF 745 (791)
T ss_pred HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999735888899999449999999999999999999
No 30
>pfam01988 VIT1 VIT family. This family includes the vacuolar Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron transporter VIT1.
Probab=76.86 E-value=4.8 Score=18.76 Aligned_cols=47 Identities=13% Similarity=0.385 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCH
Q ss_conf 9999999998887-78889999973145115678999999985048786
Q gi|254780483|r 379 AKKQYVSTANMKN-IQPKIDELREKFKQSPPQVLQKAMIQLYKTHNINP 426 (581)
Q Consensus 379 t~ks~~Sm~kM~~-lqP~i~~i~ekyk~d~~~~~~~e~m~ly~~~~vnP 426 (581)
..-.|.|-+.=|. .+=|+++-+....++| ++..+|+.++|++.|.+|
T Consensus 49 ~~G~yls~~se~~~~~~e~~~e~~~~~~~p-~~e~~el~~i~~~~Gl~~ 96 (210)
T pfam01988 49 AAGEYLSVKSERDLEEAELEREKWELENDP-EGEREELAQIYRARGLSE 96 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHCCCCH
T ss_conf 888999987089999999999999873385-889999999998749998
No 31
>KOG1594 consensus
Probab=74.20 E-value=5.6 Score=18.29 Aligned_cols=123 Identities=14% Similarity=0.203 Sum_probs=59.9
Q ss_pred CEEEEECCE-EEEEEECCCCEEEEEEECCCCCC-----CC--CCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 728997664-99999769955999995357134-----47--88772688545666553100000134787754333432
Q gi|254780483|r 69 PRVELKNPS-LIGSINLKGAQFDDLNLRGYHLD-----VS--SNSPIVTLLSPSNTKNAYFAELDYVSTANNIELPNSNT 140 (581)
Q Consensus 69 ~~I~Iend~-l~i~is~~GG~I~~~~LK~Y~~~-----~~--~ds~~v~Ll~~~~~~~~y~~~~G~~~~~~~~~~p~~~~ 140 (581)
..|.+.+.. =+++|...||+|.+++.++=.+- .. +..+++ .+.....|-++|-.+.... --...+.
T Consensus 24 ~~ivL~~p~g~taev~L~Gg~V~SWK~~~geElLf~S~kA~f~ppKpI-----RGGIP~~FPQFG~~g~l~q-HGFaRn~ 97 (305)
T KOG1594 24 DKIVLTDPRGSTAEVYLYGGQVVSWKNENGEELLFVSTKAIFKPPKPI-----RGGIPICFPQFGNFGSLPQ-HGFARNR 97 (305)
T ss_pred CEEEEECCCCCEEEEEEECCEEEEEECCCCCEEEEECHHHHCCCCCCC-----CCCCCEEEECCCCCCCCCC-CCCCCCE
T ss_conf 569995899983899992428999652788446886105304899864-----4786467304578876544-4520030
Q ss_pred CEECCCCCCCCC---CCCCEEEEECC--------CCEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCC
Q ss_conf 100156665666---66504774158--------84269999971688358999863157666422242
Q gi|254780483|r 141 VWNLISGKILTP---TTPIKLVFKNA--------NNILFERTISLDEHYLFKIVDTVTNNSIDQIRFSP 198 (581)
Q Consensus 141 ~~~~~~~~~l~~---~~~v~l~~~~~--------~g~~i~kt~t~~~~Y~i~i~~~v~N~s~~~i~~~~ 198 (581)
.|.+.....-.+ ...|.|..... ....++.+.++.+++ ++....|+|..+++.++..
T Consensus 98 ~W~v~~~p~~lp~~~~a~Vdl~Lk~~~~~~kiWp~~Fe~~lrv~l~~g~-Lt~~~rV~Ntd~KpFsF~~ 165 (305)
T KOG1594 98 FWEVENNPPPLPSLGKATVDLILKSSEDDLKIWPHSFELRLRVSLGDGE-LTLTSRVRNTDSKPFSFSF 165 (305)
T ss_pred EEEECCCCCCCCCCCCEEEEEEECCCHHHHHHCCCCEEEEEEEEECCCC-EEEEEEEECCCCCCEEEEE
T ss_conf 4685169998976786059999658820343087522799999973881-5887776627998558886
No 32
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=72.55 E-value=6.1 Score=18.01 Aligned_cols=16 Identities=13% Similarity=0.287 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 8889999999999988
Q gi|254780483|r 374 LFFPLAKKQYVSTANM 389 (581)
Q Consensus 374 i~~PLt~ks~~Sm~kM 389 (581)
+=++.+...|..--||
T Consensus 200 ~D~~~Qr~~~~k~LkM 215 (349)
T PRK12721 200 LDYAFQRYKIMKQLKM 215 (349)
T ss_pred HHHHHHHHHHHHHCCC
T ss_conf 9999999999987389
No 33
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=72.17 E-value=6.2 Score=17.95 Aligned_cols=50 Identities=26% Similarity=0.518 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9887632016399999999999988899999999999888778889999973145
Q gi|254780483|r 351 SYFYNLVGNFGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQ 405 (581)
Q Consensus 351 ~~l~~~i~NyGiaIIllTilikli~~PLt~ks~~Sm~kM~~lqP~i~~i~ekyk~ 405 (581)
.++...+..-.++++++.+++=++=++.+..+|.---||-+ +|+|+.||+
T Consensus 184 ~~~~~~~~~~~l~~~~~~liia~~D~~~qr~~~~k~lkMtK-----qEVKdE~K~ 233 (363)
T COG1377 184 SIFMELLGKLLLAVLLLLLIVAAFDYFYQRFQYIKKLKMTK-----QEVKDEYKQ 233 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-----HHHHHHHHH
T ss_conf 99999999999999999999999999999999999666868-----999999861
No 34
>PRK01294 lipase chaperone; Provisional
Probab=71.60 E-value=5.9 Score=18.10 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=10.7
Q ss_pred EEECCCCEEEEEEECCCC
Q ss_conf 997699559999953571
Q gi|254780483|r 81 SINLKGAQFDDLNLRGYH 98 (581)
Q Consensus 81 ~is~~GG~I~~~~LK~Y~ 98 (581)
.+|..|.-|+...++++.
T Consensus 77 ~~Da~g~Li~~~~~R~~F 94 (339)
T PRK01294 77 ALDAQGHLVDTRALRDFF 94 (339)
T ss_pred CCCCCCCEEECHHHHHHH
T ss_conf 417999975458899999
No 35
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=71.49 E-value=6.4 Score=17.85 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999998889999999999988877888999997314
Q gi|254780483|r 369 VFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFK 404 (581)
Q Consensus 369 ilikli~~PLt~ks~~Sm~kM~~lqP~i~~i~ekyk 404 (581)
+++=++=++.+..+|..--||-+ +|+|+.||
T Consensus 204 ~via~~D~~~Qr~~~~k~lkMsk-----qEvK~E~K 234 (358)
T PRK13109 204 IVLVALDLVWARFHWRRSLRMTK-----QEIKDEHK 234 (358)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCH-----HHHHHHHH
T ss_conf 99999999999999998648999-----99999988
No 36
>PRK08156 surface presentation of antigens protein SpaS; Validated
Probab=71.34 E-value=6.4 Score=17.83 Aligned_cols=39 Identities=15% Similarity=0.302 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99999999999988899999999999888778889999973145
Q gi|254780483|r 362 IAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQ 405 (581)
Q Consensus 362 iaIIllTilikli~~PLt~ks~~Sm~kM~~lqP~i~~i~ekyk~ 405 (581)
+.+++..++|=++=++.+..+|.---||-+ +|+|+.||+
T Consensus 183 ~~~~~~~~via~iD~~~Qr~~~~k~LrMSk-----qEVKdE~Ke 221 (367)
T PRK08156 183 LTFLACALIVLILDAIAEYFLYMKDMKMDK-----QEVKREYKE 221 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-----HHHHHHHHH
T ss_conf 999999999999999999999999748998-----999999886
No 37
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=70.41 E-value=6.7 Score=17.69 Aligned_cols=30 Identities=13% Similarity=0.208 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99988899999999999888778889999973145
Q gi|254780483|r 371 VKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQ 405 (581)
Q Consensus 371 ikli~~PLt~ks~~Sm~kM~~lqP~i~~i~ekyk~ 405 (581)
+=++=++.+..+|.-.-||-+ +|+|+.||+
T Consensus 204 ia~iD~~~Qr~~~~k~LkMSK-----qEVKdE~Ke 233 (383)
T PRK12468 204 MVGFDVFYQITSHIKKLRMTK-----QDIRDEFKN 233 (383)
T ss_pred HHHHHHHHHHHHHHHHCCCCH-----HHHHHHHHH
T ss_conf 999999999999998748999-----999999886
No 38
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=69.05 E-value=7.2 Score=17.49 Aligned_cols=65 Identities=25% Similarity=0.407 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 20163999999999999888----99999999999-8887788899999731451156789999999850487867
Q gi|254780483|r 357 VGNFGIAIMLTTVFVKLLFF----PLAKKQYVSTA-NMKNIQPKIDELREKFKQSPPQVLQKAMIQLYKTHNINPL 427 (581)
Q Consensus 357 i~NyGiaIIllTilikli~~----PLt~ks~~Sm~-kM~~lqP~i~~i~ekyk~d~~~~~~~e~m~ly~~~~vnP~ 427 (581)
+|-|-++||++.++ ++|- |=.. +|+. .||.++-|++|+++-=.. +.+..++-..+.|...-.||.
T Consensus 3 LGpweiiiI~vvvl--lLFGaKKLPdlA---RslGks~RifKsE~k~m~~d~~~-~~~~q~~~~~a~~~~~~~~p~ 72 (107)
T PRK00191 3 LGPWEIGIIVLLII--VLFGAKKLPDAA---RSIGRSMRIFKSEVKEMNKDDDT-PEQQQQQQQIAAAQQQAPNPI 72 (107)
T ss_pred CCHHHHHHHHHHHH--HHHCCCCCHHHH---HHHHHHHHHHHHHHHHHHHCCCC-CCCHHHCHHHHHHHHCCCCHH
T ss_conf 63799999999999--997653036999---98858999999999998734577-433222446765211278803
No 39
>pfam02936 COX4 Cytochrome c oxidase subunit IV. Cytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium member of this family is called COX VI. The uncharacterized yeast protein YGL226W appears to be the yeast COX IV subunit.
Probab=66.25 E-value=5.4 Score=18.40 Aligned_cols=32 Identities=25% Similarity=0.219 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 88778889999973145115678999999985
Q gi|254780483|r 389 MKNIQPKIDELREKFKQSPPQVLQKAMIQLYK 420 (581)
Q Consensus 389 M~~lqP~i~~i~ekyk~d~~~~~~~e~m~ly~ 420 (581)
-|.+.|++++|+||-|.|=.+--.+|-.+||+
T Consensus 26 ~~e~t~~~~aLreKeKgdWk~LS~eEKkalYr 57 (143)
T pfam02936 26 FREQSELIMALREKEKGDWKSLSLEEKKALYR 57 (143)
T ss_pred CHHCCHHHHHHHHHHCCCHHHCCHHHHHHHHH
T ss_conf 10131999999999519977769999999999
No 40
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=66.23 E-value=4.3 Score=19.08 Aligned_cols=26 Identities=23% Similarity=0.723 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999887632016399999999999988899
Q gi|254780483|r 349 LMSYFYNLVGNFGIAIMLTTVFVKLLFFPL 378 (581)
Q Consensus 349 ~L~~l~~~i~NyGiaIIllTilikli~~PL 378 (581)
+|+++|+ ||=||+|+--|.||.-||.
T Consensus 3 ~mn~~yg----~GAaVVIiGALFKI~H~~~ 28 (202)
T TIGR03513 3 VMNIVYG----WGAAVVILGALFKIMHWPM 28 (202)
T ss_pred HHHHHHH----CCHHHHHHHHHHHHHCCCC
T ss_conf 8999882----1429999999999928765
No 41
>pfam00606 Glycoprotein_B Herpesvirus Glycoprotein B. This family of proteins contains a transmembrane region.
Probab=63.93 E-value=8.9 Score=16.80 Aligned_cols=34 Identities=26% Similarity=0.468 Sum_probs=17.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 8678899999999999999999987698628875
Q gi|254780483|r 425 NPLAGCWPILLQIPVFFAIYKVISISLEMRHAPF 458 (581)
Q Consensus 425 nP~~GClP~l~q~p~~~a~~~~~~~~ielr~~~f 458 (581)
||+||.+=+|+=+-+.++.|.+++..-.|+++|.
T Consensus 663 NPfGg~~i~llv~~~v~~v~~~~rr~~~~~~~Pi 696 (711)
T pfam00606 663 NPFGGLLIILLVLAGLVAVFLAYRRVRRLRQNPI 696 (711)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 9578899999999998543578999999885967
No 42
>COG0676 Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=63.81 E-value=8.9 Score=16.79 Aligned_cols=126 Identities=16% Similarity=0.169 Sum_probs=65.7
Q ss_pred CCCEEEEECCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCC-------CCEEEEECCCCCCCCCCCCC-
Q ss_conf 5872899766499999769955999995357134478877268854566655-------31000001347877543334-
Q gi|254780483|r 67 MSPRVELKNPSLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTKN-------AYFAELDYVSTANNIELPNS- 138 (581)
Q Consensus 67 ~~~~I~Iend~l~i~is~~GG~I~~~~LK~Y~~~~~~ds~~v~Ll~~~~~~~-------~y~~~~G~~~~~~~~~~p~~- 138 (581)
..+.+.+..+..++.|+..||.+.+++.+.- ..+.=++++..-. .-..-.-|.+.......|.+
T Consensus 23 ~~~~~~~~h~~~~a~islqGAqLLs~qP~ge--------~evLWLS~~~p~~~g~aIRGGIPICwPWFG~~~~~~~PaHG 94 (287)
T COG0676 23 QLPLIVVDHPLGSAAISLQGAQLLSWQPKGE--------EEVLWLSSNAPFKGGAAIRGGIPICWPWFGPLAQQGLPAHG 94 (287)
T ss_pred CCCCEEEECCCCEEEEECCCCEEEEECCCCC--------CCEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
T ss_conf 3581676156413678627716987647999--------73588635676678875337774887554766788898621
Q ss_pred ---CCCEECCCCCCCCCCCCCEEEEECCC---CEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCEEE
Q ss_conf ---32100156665666665047741588---42699999716883589998631576664222421012
Q gi|254780483|r 139 ---NTVWNLISGKILTPTTPIKLVFKNAN---NILFERTISLDEHYLFKIVDTVTNNSIDQIRFSPRGRI 202 (581)
Q Consensus 139 ---~~~~~~~~~~~l~~~~~v~l~~~~~~---g~~i~kt~t~~~~Y~i~i~~~v~N~s~~~i~~~~~~~i 202 (581)
+..|++.......+...++|...... ...++-++.|.+. .+++.+..|.++....+..|..+
T Consensus 95 ~AR~~~W~l~~~~~~~~~v~v~f~L~~~~~p~~~~lr~~~~~g~~--le~~l~~~~~~s~~~AlHtYF~V 162 (287)
T COG0676 95 FARNRPWKLLEHDEDEDGVRVTFGLDLEDEPHDFTLRLTFRFGET--LELELESYGEESFQAALHTYFRV 162 (287)
T ss_pred HHHCCCEEEEEHHCCCCCEEEEEEECCCCCCCCEEEEEEEECCCE--EEEEEEECCHHHHHHHHCCEEEE
T ss_conf 011474043200102686399997278766651478887650224--89999744855788751110770
No 43
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.01 E-value=7.5 Score=17.35 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 399999999999988899999999999888
Q gi|254780483|r 361 GIAIMLTTVFVKLLFFPLAKKQYVSTANMK 390 (581)
Q Consensus 361 GiaIIllTilikli~~PLt~ks~~Sm~kM~ 390 (581)
|..+|+..||.=+.+|-=+|.+-+--..++
T Consensus 22 Gk~li~gviLg~~~lfGW~ywq~~q~~q~~ 51 (207)
T COG2976 22 GKALIVGVILGLGGLFGWRYWQSHQVEQAQ 51 (207)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 907899999999999988999998788888
No 44
>TIGR00380 cobD cobalamin biosynthesis protein CobD; InterPro: IPR004485 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents the CbiB protein, which is involved in cobalamin biosynthesis and porphyrin biosynthesis. It converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group. It is part of the cob operon .; GO: 0009236 cobalamin biosynthetic process, 0016021 integral to membrane.
Probab=60.43 E-value=9.7 Score=16.52 Aligned_cols=48 Identities=13% Similarity=0.309 Sum_probs=22.8
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH----------------HH---HHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 999999985048786788999999999999999----------------99---9876986288753410000335
Q gi|254780483|r 412 QKAMIQLYKTHNINPLAGCWPILLQIPVFFAIY----------------KV---ISISLEMRHAPFWGWIKDLAAA 468 (581)
Q Consensus 412 ~~e~m~ly~~~~vnP~~GClP~l~q~p~~~a~~----------------~~---~~~~ielr~~~f~~Wi~dls~~ 468 (581)
-.|..|==.||=|- =+--|+|+|+- ++ +-.+|==|.++. .|+-=+++.
T Consensus 143 ~sA~vESlaEN~vD--------gv~apLFY~llGilfGl~GPWPlA~~YravnTLDAMvGY~~~~Y-~~~GkfaAR 209 (322)
T TIGR00380 143 LSAAVESLAENIVD--------GVTAPLFYALLGILFGLPGPWPLAFVYRAVNTLDAMVGYKKEKY-EDLGKFAAR 209 (322)
T ss_pred HHHHHHHHHHCHHH--------HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCHHH
T ss_conf 77886553301133--------33789999999986478771479999999977532102467643-100430112
No 45
>PTZ00243 ABC transporter; Provisional
Probab=59.49 E-value=11 Score=16.26 Aligned_cols=10 Identities=10% Similarity=0.461 Sum_probs=4.9
Q ss_pred HHHHHHCCCC
Q ss_conf 9999731451
Q gi|254780483|r 397 DELREKFKQS 406 (581)
Q Consensus 397 ~~i~ekyk~d 406 (581)
-.|-.|+-.|
T Consensus 1055 GRIlNRFS~D 1064 (1560)
T PTZ00243 1055 GRILNRFSRD 1064 (1560)
T ss_pred HHHHHHHHHH
T ss_conf 7788886777
No 46
>KOG0209 consensus
Probab=58.27 E-value=9.1 Score=16.74 Aligned_cols=29 Identities=17% Similarity=0.052 Sum_probs=17.3
Q ss_pred CHHHHH--HHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 327899--99999999999997513789887
Q gi|254780483|r 3 RNWNYF--VAIALSVIIVYAWQNFYVYPRIE 31 (581)
Q Consensus 3 ~nKn~i--Iai~Ls~~ill~w~~~~~~p~~e 31 (581)
+||-++ |.+.|.|+|.-.|..|......+
T Consensus 392 Nn~Etf~FILFLlVFAiaAa~Yvwv~Gskd~ 422 (1160)
T KOG0209 392 NNRETFIFILFLLVFAIAAAGYVWVEGSKDP 422 (1160)
T ss_pred CCHHHHHHHHHHHHHHHHHHHEEEEECCCCC
T ss_conf 4277899999999999975205788424686
No 47
>pfam09095 DUF1926 Domain of unknown function (DUF1926). Members of this family, which are found in a set of prokaryotic transferases, adopt a beta-sandwich fold, in which two layers of anti-parallel beta-sheets are arranged in a nearly parallel fashion. The exact function of this family is, as yet, unknown, however it has been proposed that they may play a role in transglycosylation reactions.
Probab=58.16 E-value=11 Score=16.11 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=24.2
Q ss_pred CEEEEECCEEEEEEECC-CCEEEEEEECC
Q ss_conf 72899766499999769-95599999535
Q gi|254780483|r 69 PRVELKNPSLIGSINLK-GAQFDDLNLRG 96 (581)
Q Consensus 69 ~~I~Iend~l~i~is~~-GG~I~~~~LK~ 96 (581)
+.|-++|+.+.+.|.+. ||+|.++-.|.
T Consensus 8 ~Ev~l~~~~~~~~~~p~~GGsi~ElD~k~ 36 (275)
T pfam09095 8 EEILLENESFNAYVKPDQGGSIFELDSKA 36 (275)
T ss_pred EEEEEECCCEEEEEEECCCCEEEEEECCC
T ss_conf 01588768579999628885799982255
No 48
>pfam05600 DUF773 Protein of unknown function (DUF773). This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=57.63 E-value=11 Score=16.04 Aligned_cols=40 Identities=20% Similarity=0.429 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHH
Q ss_conf 88877888999997314511567899999998504878678
Q gi|254780483|r 388 NMKNIQPKIDELREKFKQSPPQVLQKAMIQLYKTHNINPLA 428 (581)
Q Consensus 388 kM~~lqP~i~~i~ekyk~d~~~~~~~e~m~ly~~~~vnP~~ 428 (581)
..+.++|++++|.+|-|.=+ +...++.-+.|+...||=||
T Consensus 467 ~~~~~~pkl~~l~~~TreLq-k~iE~~iSk~y~~R~VnlmG 506 (506)
T pfam05600 467 EQSSLEPKLDLLIEKTRELQ-KLIEADISKRYNGRPVNLMG 506 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCCCCCCCC
T ss_conf 99973079999999999999-99999999984898323479
No 49
>TIGR02120 GspF general secretion pathway protein F; InterPro: IPR011850 This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the "Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. GspF nearly always clusters with other GSP subunits. However, some genes from Xylella and Xanthomonas strains are excluded from this entry due to excessive divergence.; GO: 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex.
Probab=55.94 E-value=12 Score=15.85 Aligned_cols=49 Identities=16% Similarity=0.356 Sum_probs=30.4
Q ss_pred EEECHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 850002788763220146310123332011035689999-99998876320163999999999999888
Q gi|254780483|r 309 FAGAKEFPTIHHYEKDLAIPRFEMLIDWGWFYFIAKPMF-MLMSYFYNLVGNFGIAIMLTTVFVKLLFF 376 (581)
Q Consensus 309 Y~GPk~~~~L~~~~~~l~~~~l~~~vd~Gwf~~i~kplf-~~L~~l~~~i~NyGiaIIllTilikli~~ 376 (581)
|+=||-.+.-+.....| |+. .+|=.+.+|+.+|||+|++--.++=.++.
T Consensus 201 ~VVPkvV~~F~~~~q~L-------------------Pl~Tr~li~lSdFl~~~G~~~~~~~~~~~~l~~ 250 (414)
T TIGR02120 201 YVVPKVVEQFAHMKQTL-------------------PLLTRALIALSDFLRSWGWALLAALAALVVLFR 250 (414)
T ss_pred HHCCCEECHHHCCCCCC-------------------CHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 20444031023199787-------------------489999998451688899999999999999999
No 50
>KOG2295 consensus
Probab=55.69 E-value=11 Score=16.24 Aligned_cols=59 Identities=19% Similarity=0.370 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHCCCCHHHH----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 7888999997314511567----89999999850487867889999999999999999998769862887
Q gi|254780483|r 392 IQPKIDELREKFKQSPPQV----LQKAMIQLYKTHNINPLAGCWPILLQIPVFFAIYKVISISLEMRHAP 457 (581)
Q Consensus 392 lqP~i~~i~ekyk~d~~~~----~~~e~m~ly~~~~vnP~~GClP~l~q~p~~~a~~~~~~~~ielr~~~ 457 (581)
+-++-.|+++|-+.|..+. .+.-+|+||+..=--|++||--.+ --|=|+ +.-|.+.|+.
T Consensus 475 ~~lee~eakkkg~k~~e~eve~~v~s~t~e~~kdKy~C~lsgc~KlF-~gpEFv------rKHi~~KH~d 537 (648)
T KOG2295 475 LELEEEEAKKKGAKDVEDEVENFVDSNTMELDKDKYLCPLSGCAKLF-KGPEFV------RKHINKKHKD 537 (648)
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHC-CCHHHH------HHHHHHHHHH
T ss_conf 55018999975146788899999888788752202057775267541-378999------9998877789
No 51
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=55.34 E-value=9 Score=16.75 Aligned_cols=31 Identities=29% Similarity=0.376 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 8778889999973145115678999999985
Q gi|254780483|r 390 KNIQPKIDELREKFKQSPPQVLQKAMIQLYK 420 (581)
Q Consensus 390 ~~lqP~i~~i~ekyk~d~~~~~~~e~m~ly~ 420 (581)
+++.|++++|+||-|.|=.+--.+|-.+||+
T Consensus 27 ~e~t~~~~aLrekeKgdWk~LT~eEKkalYr 57 (136)
T cd00922 27 RELSAEIKALREKEKGDWKQLTLEEKKALYR 57 (136)
T ss_pred CCCCHHHHHHHHHHCCCHHHCCHHHHHHHHH
T ss_conf 0089889999998529966669999999999
No 52
>TIGR00328 flhB flagellar biosynthetic protein FlhB; InterPro: IPR006136 The flhB and flhA genes constitute an operon called flhB operon on the Salmonella typhimurium chromosome. They, together with FliI and FliH, may constitute the export apparatus of flagellin, the component protein of flagellar filament. The flhB gene encodes a highly hydrophobic polypeptide with several potential membrane-spanning segments, suggesting that it may be an integral membrane protein .; GO: 0009306 protein secretion, 0016020 membrane.
Probab=54.87 E-value=12 Score=15.73 Aligned_cols=13 Identities=8% Similarity=0.079 Sum_probs=5.2
Q ss_pred CCCCCCCCHHHHH
Q ss_conf 0000335725666
Q gi|254780483|r 462 IKDLAAADPTNIF 474 (581)
Q Consensus 462 i~dls~~d~~~~~ 474 (581)
+.+|+..++-..+
T Consensus 169 ~~~L~~~~~~~~~ 181 (352)
T TIGR00328 169 LLSLSLYSLQQAL 181 (352)
T ss_pred HHHHHHCCHHHHH
T ss_conf 9988614888999
No 53
>PRK00575 tatA twin arginine translocase protein A; Provisional
Probab=54.64 E-value=13 Score=15.71 Aligned_cols=47 Identities=21% Similarity=0.249 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHCCCC
Q ss_conf 016399999999999988899999-99999-98887788899999731451
Q gi|254780483|r 358 GNFGIAIMLTTVFVKLLFFPLAKK-QYVST-ANMKNIQPKIDELREKFKQS 406 (581)
Q Consensus 358 ~NyGiaIIllTilikli~~PLt~k-s~~Sm-~kM~~lqP~i~~i~ekyk~d 406 (581)
+-|-|+||++.+++ +|-+=-.- -.+|. +-||..+.+++|.++..|.+
T Consensus 5 ~~w~~~ii~~vv~l--lFG~kkLp~~arslG~s~r~fK~~~~e~~~e~~~~ 53 (88)
T PRK00575 5 SPWHWAILAVVVIV--LFGAKKLPDAARSLGKSMRIFKSEVREMQNENKAE 53 (88)
T ss_pred CHHHHHHHHHHHHH--HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 17999999999999--96754016899999999999999998755100012
No 54
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=53.82 E-value=13 Score=15.62 Aligned_cols=50 Identities=20% Similarity=0.406 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9887632016399999999999988899999999999888778889999973145
Q gi|254780483|r 351 SYFYNLVGNFGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQ 405 (581)
Q Consensus 351 ~~l~~~i~NyGiaIIllTilikli~~PLt~ks~~Sm~kM~~lqP~i~~i~ekyk~ 405 (581)
..+.+.+..-.+.+++.-++|=++=|+.+...|.---||-+ +|+|+.||+
T Consensus 184 ~~~~~~~~~l~~~~~~~~~via~~D~~~qr~~~~k~lkMSk-----qEvKdE~K~ 233 (352)
T PRK05702 184 GHALDLVLKLLLLVVLALLVIAAIDVPFQRWQYLKKLKMTK-----QEVKDEYKQ 233 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH-----HHHHHHHHH
T ss_conf 99999999999999999999999999999999998838999-----999999986
No 55
>pfam07014 Hs1pro-1_C Hs1pro-1 protein C-terminus. This family represents the C-terminus (approximately 270 residues) of a number of plant Hs1pro-1 proteins, which are believed to confer nematode resistance.
Probab=53.47 E-value=7.5 Score=17.34 Aligned_cols=14 Identities=29% Similarity=0.615 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 78999999985048
Q gi|254780483|r 410 VLQKAMIQLYKTHN 423 (581)
Q Consensus 410 ~~~~e~m~ly~~~~ 423 (581)
++|.+.|+||++.+
T Consensus 168 riqEAaMkLy~~k~ 181 (261)
T pfam07014 168 RIQEAAMKLYRRKT 181 (261)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 69999999998236
No 56
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=52.51 E-value=3.6 Score=19.67 Aligned_cols=37 Identities=19% Similarity=0.449 Sum_probs=27.5
Q ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 88999997314511567899999998504878678899
Q gi|254780483|r 394 PKIDELREKFKQSPPQVLQKAMIQLYKTHNINPLAGCW 431 (581)
Q Consensus 394 P~i~~i~ekyk~d~~~~~~~e~m~ly~~~~vnP~~GCl 431 (581)
|+...=+..|-++| +.+.+.++.+.++-+||-+|||-
T Consensus 259 P~~~g~~~~Y~~~p-~~~a~~~~~f~~~g~vnIvGGCC 295 (311)
T COG0646 259 PNAFGERAVYDLTP-EYMAEALAEFAEEGGVNIVGGCC 295 (311)
T ss_pred CCCCCCCCCCCCCH-HHHHHHHHHHHHHCCCEEECCCC
T ss_conf 75468845268998-99999999999837841604436
No 57
>PRK13665 hypothetical protein; Provisional
Probab=52.19 E-value=12 Score=15.83 Aligned_cols=16 Identities=19% Similarity=0.503 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHCC
Q ss_conf 8877888999997314
Q gi|254780483|r 389 MKNIQPKIDELREKFK 404 (581)
Q Consensus 389 M~~lqP~i~~i~ekyk 404 (581)
-|+++-+.+|.|.|-=
T Consensus 261 EQEm~A~~qe~rAkvV 276 (327)
T PRK13665 261 EQEMKARVQEMRAKVV 276 (327)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999766731
No 58
>pfam11694 DUF3290 Protein of unknown function (DUF3290). This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=51.57 E-value=11 Score=16.26 Aligned_cols=22 Identities=9% Similarity=-0.005 Sum_probs=11.5
Q ss_pred CCCCEEEEECCEEEEEEECCCC
Q ss_conf 4587289976649999976995
Q gi|254780483|r 66 SMSPRVELKNPSLIGSINLKGA 87 (581)
Q Consensus 66 ~~~~~I~Iend~l~i~is~~GG 87 (581)
..+-.|.++...+++.+++.|-
T Consensus 107 ~dG~iVki~~~~Yrv~~n~d~~ 128 (149)
T pfam11694 107 TDGMIVKIGKNYYRVNLNTDNN 128 (149)
T ss_pred CCCEEEEECCEEEEEEECCCCC
T ss_conf 5776999878279999879987
No 59
>PRK06298 type III secretion system protein; Validated
Probab=51.32 E-value=14 Score=15.34 Aligned_cols=16 Identities=13% Similarity=0.264 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 8889999999999988
Q gi|254780483|r 374 LFFPLAKKQYVSTANM 389 (581)
Q Consensus 374 i~~PLt~ks~~Sm~kM 389 (581)
+=|+.+...|..--||
T Consensus 201 ~D~~~qr~~~~k~LkM 216 (360)
T PRK06298 201 LDLVYQRHNFAKELKM 216 (360)
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999987079
No 60
>KOG4075 consensus
Probab=49.65 E-value=13 Score=15.63 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 9888778889999973145115678999999985
Q gi|254780483|r 387 ANMKNIQPKIDELREKFKQSPPQVLQKAMIQLYK 420 (581)
Q Consensus 387 ~kM~~lqP~i~~i~ekyk~d~~~~~~~e~m~ly~ 420 (581)
..-+++++++++|+||=|.|=.+.-.+|--+||+
T Consensus 49 ~~~~e~~~~~~aL~eKek~~Wk~LS~~EKkalYr 82 (167)
T KOG4075 49 IRFRELSAEIKALREKEKAPWKQLSTEEKKALYR 82 (167)
T ss_pred HHHHCCCHHHHHHHHHHCCCHHHCCHHHHHHHHH
T ss_conf 5430301777778887508843338798889999
No 61
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase; InterPro: IPR004631 4-aminobutyrate aminotransferase eukaryotic (2.6.1.19 from EC) is a class III pyridoxal-phosphate-dependent aminotransferase. The enzyme catalyses the conversion of 4-aminobutanoate and 2-oxoglutarate into succinate semialdehyde and L-glutamate. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so the prokaryotic and eukaryotic sets have been placed into separate families. This family describes known eukaryotic examples of the enzyme. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.; GO: 0003867 4-aminobutyrate transaminase activity, 0009448 gamma-aminobutyric acid metabolic process.
Probab=47.73 E-value=12 Score=15.79 Aligned_cols=41 Identities=15% Similarity=0.490 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHCCC-----------------CHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 8778889999973145-----------------11567899999998504878678899
Q gi|254780483|r 390 KNIQPKIDELREKFKQ-----------------SPPQVLQKAMIQLYKTHNINPLAGCW 431 (581)
Q Consensus 390 ~~lqP~i~~i~ekyk~-----------------d~~~~~~~e~m~ly~~~~vnP~~GCl 431 (581)
.-|=-.+++|++||-+ -|..+..-+...--|-+||| +|||=
T Consensus 384 d~Ly~GLe~L~~~YP~~~~nlRGKGrGTFiawD~p~~a~Rd~l~~~~r~~Gvn-~GGcG 441 (469)
T TIGR00699 384 DYLYTGLEDLQKKYPEKVQNLRGKGRGTFIAWDTPDEAKRDKLLLKARLNGVN-IGGCG 441 (469)
T ss_pred HHHHHHHHHHHHHCCHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCEE-ECCCC
T ss_conf 78899899999750134403446764215740498878889999962238257-62653
No 62
>KOG3021 consensus
Probab=46.55 E-value=17 Score=14.84 Aligned_cols=37 Identities=27% Similarity=0.560 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHHCCCCH
Q ss_conf 8778889999973145115----678999999985048786
Q gi|254780483|r 390 KNIQPKIDELREKFKQSPP----QVLQKAMIQLYKTHNINP 426 (581)
Q Consensus 390 ~~lqP~i~~i~ekyk~d~~----~~~~~e~m~ly~~~~vnP 426 (581)
+.|||+|+-+.+.|+|-.. ..+|+.|-.|++---|-|
T Consensus 170 hRlq~Qldl~~~~~~Dre~~el~~~L~~kia~Lf~~~eI~P 210 (313)
T KOG3021 170 HRLQPQLDLLEKTYGDREAFELWSILQTKIADLFKCLEILP 210 (313)
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCEEEH
T ss_conf 75327888998862539999999999986378754644423
No 63
>KOG3958 consensus
Probab=45.88 E-value=17 Score=14.77 Aligned_cols=53 Identities=28% Similarity=0.427 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHH
Q ss_conf 98887788899999731451-156789999999850-487867889999999999
Q gi|254780483|r 387 ANMKNIQPKIDELREKFKQS-PPQVLQKAMIQLYKT-HNINPLAGCWPILLQIPV 439 (581)
Q Consensus 387 ~kM~~lqP~i~~i~ekyk~d-~~~~~~~e~m~ly~~-~~vnP~~GClP~l~q~p~ 439 (581)
++.+-+--+|++|-||+++. .-...++..-+||-- .+-.|....||-++|--+
T Consensus 250 qRL~s~lgK~~~IaEk~~~s~~Da~~d~KV~elye~~qrw~pi~stLP~~V~rl~ 304 (371)
T KOG3958 250 QRLQSVLGKVNEIAEKHKASVEDADTDSKVHELYETIQRWSPIASTLPELVQRLV 304 (371)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999889999876016511112566699999999864058776299999999
No 64
>PTZ00234 variable surface protein Vir12; Provisional
Probab=44.13 E-value=18 Score=14.58 Aligned_cols=13 Identities=0% Similarity=-0.074 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999998787999
Q gi|254780483|r 526 VFVFALSSFPAGL 538 (581)
Q Consensus 526 ~~~~~~~~~~~gl 538 (581)
||++|++++.|||
T Consensus 377 IfFLFYYN~SS~l 389 (433)
T PTZ00234 377 LVFLFFFFKSTPI 389 (433)
T ss_pred HHHHHHEECCCCC
T ss_conf 9998630036664
No 65
>pfam07748 Glyco_hydro_38C Glycosyl hydrolases family 38 C-terminal domain. Glycosyl hydrolases are key enzymes of carbohydrate metabolism.
Probab=42.89 E-value=19 Score=14.45 Aligned_cols=30 Identities=13% Similarity=0.009 Sum_probs=24.6
Q ss_pred CEEEEECCEEEEEEECCCCEEEEEEECCCCC
Q ss_conf 7289976649999976995599999535713
Q gi|254780483|r 69 PRVELKNPSLIGSINLKGAQFDDLNLRGYHL 99 (581)
Q Consensus 69 ~~I~Iend~l~i~is~~GG~I~~~~LK~Y~~ 99 (581)
..+++||+.++++|+.. |.|.++.-|+-..
T Consensus 31 ~~~~lEN~~~rv~~~~~-G~i~Si~dK~~~r 60 (379)
T pfam07748 31 ESVILENGFLKVEFDPT-GLLKSIYDKENGR 60 (379)
T ss_pred CCEEEECCCEEEEECCC-CCEEEEEECCCCC
T ss_conf 99998798299999999-9899999946797
No 66
>PRK10893 hypothetical protein; Provisional
Probab=42.67 E-value=19 Score=14.43 Aligned_cols=23 Identities=13% Similarity=0.638 Sum_probs=16.1
Q ss_pred CCCHHHH-HHHHHHHHHHHHHHHH
Q ss_conf 9732789-9999999999999975
Q gi|254780483|r 1 MERNWNY-FVAIALSVIIVYAWQN 23 (581)
Q Consensus 1 Md~nKn~-iIai~Ls~~ill~w~~ 23 (581)
|..-||= .|.+++++++|+||++
T Consensus 1 ~~~~~~w~~~~l~~~a~~l~~w~~ 24 (190)
T PRK10893 1 MSKTRRWVIIVLSLAALVLIGWNM 24 (190)
T ss_pred CCHHHHHHHHHHHHHHHHHHEEEE
T ss_conf 952577999999999999850551
No 67
>KOG4847 consensus
Probab=42.56 E-value=19 Score=14.41 Aligned_cols=39 Identities=23% Similarity=0.404 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 877888999997314511567899999998504878678899999
Q gi|254780483|r 390 KNIQPKIDELREKFKQSPPQVLQKAMIQLYKTHNINPLAGCWPIL 434 (581)
Q Consensus 390 ~~lqP~i~~i~ekyk~d~~~~~~~e~m~ly~~~~vnP~~GClP~l 434 (581)
++||||++-+-+.-|. +.+||.|. +|+|+.|.|-.||-.
T Consensus 360 kklq~ei~ialaq~ke--mAkMqVe~----~K~n~~pV~dllp~m 398 (483)
T KOG4847 360 KKLQPEIQIALAQIKE--MAKMQVEI----CKKNMEPVGDLLPEM 398 (483)
T ss_pred HHCCHHHHHHHHHHHH--HHHHHHHH----HHCCCCHHHHHHHHC
T ss_conf 6405679999988688--88878999----972887189876512
No 68
>PRK11462 putative transporter; Provisional
Probab=42.51 E-value=19 Score=14.41 Aligned_cols=30 Identities=0% Similarity=0.082 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHC
Q ss_conf 999999999987479983479898888520
Q gi|254780483|r 547 VISIVQQAVIMKMHGAEIGLIDRLRSTFSK 576 (581)
Q Consensus 547 ~~~~~qq~~i~~~~~~~~~~~~~~~~~~~~ 576 (581)
++-++=-.++.|...-.++..+.|++.+++
T Consensus 415 i~~ll~~ii~~~~Y~L~~~~~~eI~~eL~~ 444 (460)
T PRK11462 415 ICYLLSAIIAKRYYSLTTHNLKTVMEQLAQ 444 (460)
T ss_pred HHHHHHHHHHHHEECCCHHHHHHHHHHHHH
T ss_conf 999999999995235989999999999999
No 69
>pfam06045 Rhamnogal_lyase Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi.
Probab=41.15 E-value=20 Score=14.26 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=25.6
Q ss_pred CCCEEEEECCEEEEEEECCCCEEEEEEECC
Q ss_conf 587289976649999976995599999535
Q gi|254780483|r 67 MSPRVELKNPSLIGSINLKGAQFDDLNLRG 96 (581)
Q Consensus 67 ~~~~I~Iend~l~i~is~~GG~I~~~~LK~ 96 (581)
.+..|.++|..+.+++|+-||.|..++-+.
T Consensus 6 ~~~~VvlDNGivqvTls~p~g~vtgikynG 35 (194)
T pfam06045 6 PGLNVVVDNGIVQVTLSNPGGAITGIRYNG 35 (194)
T ss_pred CCCEEEEECCEEEEEECCCCCCEEEEEECC
T ss_conf 788799978879999769985289999868
No 70
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=41.04 E-value=20 Score=14.25 Aligned_cols=12 Identities=8% Similarity=0.423 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999999999
Q gi|254780483|r 10 AIALSVIIVYAW 21 (581)
Q Consensus 10 ai~Ls~~ill~w 21 (581)
|+++.|++++.|
T Consensus 19 G~Vf~FL~lLV~ 30 (82)
T PRK02919 19 GFVLAFLFLLIF 30 (82)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 71
>TIGR02830 spore_III_AG stage III sporulation protein AG; InterPro: IPR014195 This entry represents the stage III sporulation protein AG, which is encoded in a spore formation operon: spoIIIAABCDEFGH under the control of sigma G . A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species..
Probab=39.53 E-value=21 Score=14.09 Aligned_cols=26 Identities=15% Similarity=0.309 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999999975137898876
Q gi|254780483|r 7 YFVAIALSVIIVYAWQNFYVYPRIEE 32 (581)
Q Consensus 7 ~iIai~Ls~~ill~w~~~~~~p~~e~ 32 (581)
.|+-++|++++||.|.-||.++....
T Consensus 5 ~l~~L~liG~~ll~~s~~F~~~~~~~ 30 (193)
T TIGR02830 5 YLLVLLLIGLLLLLVSSFFSSSEDIE 30 (193)
T ss_pred CEEHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 14424789999999987617856633
No 72
>KOG1604 consensus
Probab=37.74 E-value=22 Score=13.90 Aligned_cols=33 Identities=21% Similarity=0.077 Sum_probs=28.6
Q ss_pred CCCCCEEEEECCE-EEEEEECCCCEEEEEEECCC
Q ss_conf 1458728997664-99999769955999995357
Q gi|254780483|r 65 LSMSPRVELKNPS-LIGSINLKGAQFDDLNLRGY 97 (581)
Q Consensus 65 ~~~~~~I~Iend~-l~i~is~~GG~I~~~~LK~Y 97 (581)
....+++++.|.. +.++|.+.|+.|.++.+.+-
T Consensus 17 ~~~~~~~tl~n~~~l~vti~~~GATi~sL~vpd~ 50 (353)
T KOG1604 17 KQTIRVYTLGNGKGLQVTIINLGATITSLKVPDK 50 (353)
T ss_pred CCCEEEEEECCCCEEEEEEEECCCEEEEEECCCC
T ss_conf 3725899953797468999617848899872786
No 73
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=36.87 E-value=23 Score=13.81 Aligned_cols=14 Identities=7% Similarity=0.145 Sum_probs=5.8
Q ss_pred EEEEECCEEEEEEE
Q ss_conf 28997664999997
Q gi|254780483|r 70 RVELKNPSLIGSIN 83 (581)
Q Consensus 70 ~I~Iend~l~i~is 83 (581)
++.++.|-+.++|+
T Consensus 62 tV~Ld~~Gv~l~f~ 75 (120)
T PRK06531 62 KIVLDVDGVYLTFE 75 (120)
T ss_pred EEEEEECCEEEEEE
T ss_conf 89998289799998
No 74
>PRK03411 consensus
Probab=34.94 E-value=17 Score=14.82 Aligned_cols=13 Identities=15% Similarity=0.028 Sum_probs=4.8
Q ss_pred EEECHHHHHHHHH
Q ss_conf 8500027887632
Q gi|254780483|r 309 FAGAKEFPTIHHY 321 (581)
Q Consensus 309 Y~GPk~~~~L~~~ 321 (581)
++-+..-+.++.|
T Consensus 126 ~fr~ls~~eI~~Y 138 (194)
T PRK03411 126 HFRHLSEAEIDGY 138 (194)
T ss_pred EECCCCHHHHHHH
T ss_conf 5037999999999
No 75
>COG2017 GalM Galactose mutarotase and related enzymes [Carbohydrate transport and metabolism]
Probab=34.91 E-value=24 Score=13.59 Aligned_cols=122 Identities=17% Similarity=0.269 Sum_probs=60.1
Q ss_pred CCCEEEEECC-EEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEECC-CC--CCCCCE-EEEE----------CCCCCC
Q ss_conf 5872899766-4999997699559999953571344788772688545-66--655310-0000----------134787
Q gi|254780483|r 67 MSPRVELKNP-SLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSP-SN--TKNAYF-AELD----------YVSTAN 131 (581)
Q Consensus 67 ~~~~I~Iend-~l~i~is~~GG~I~~~~LK~Y~~~~~~ds~~v~Ll~~-~~--~~~~y~-~~~G----------~~~~~~ 131 (581)
....++++|. ...+++-..||.|.+++.+. .+.+....+ +. ....|. +..| +...+.
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~GA~l~~l~~~~--------~~v~l~~~~~~~~~~~~~~~ga~l~p~anRI~~g~f~~~G~ 82 (308)
T COG2017 11 PVRLLTLGNGGGMVVTVPDWGATLTSLRVNG--------RNLLLGFDDAESYPATRGYGGAILGPYANRISNGRFTLDGK 82 (308)
T ss_pred CEEEEEECCCCEEEEEECCCCCEEEEEEECC--------CCEEEECCCCCCCCCCCCCCCCEECCCCCEECCCEEEECCE
T ss_conf 2479995699879999825895899989879--------43677546421122346656647706167440998989998
Q ss_pred CCCCC-------CC----CCCEECCCCCCCCCCCCCEEEEECC-----CCEEEEEEEEECCCCEEEEEEEECCCC--CCC
Q ss_conf 75433-------34----3210015666566666504774158-----842699999716883589998631576--664
Q gi|254780483|r 132 NIELP-------NS----NTVWNLISGKILTPTTPIKLVFKNA-----NNILFERTISLDEHYLFKIVDTVTNNS--IDQ 193 (581)
Q Consensus 132 ~~~~p-------~~----~~~~~~~~~~~l~~~~~v~l~~~~~-----~g~~i~kt~t~~~~Y~i~i~~~v~N~s--~~~ 193 (581)
..+++ .| .-.|++..... .++..++++...+ ..+.++-+|+++++- +.++++++|.+ ..+
T Consensus 83 ~y~L~~N~~~~~lHG~~~~~~~~v~~~~~-~~~~~~~l~~~~~~~gyP~~l~~~vtY~L~~~~-L~v~~~~~n~~~~~~p 160 (308)
T COG2017 83 TYQLPPNEGGNALHGGARDFDWQVWEAEE-DDNAEFSLVLRDGEDGYPGNLEATVTYTLNEDG-LTVTYEVTNDGDEPTP 160 (308)
T ss_pred EEECCCCCCCCCCCCCCCCCCCEEEEEEC-CCCCEEEEEECCCCCCCCEEEEEEEEEEECCCC-EEEEEEEEECCCCCEE
T ss_conf 98757678877776751378728898762-458579999457788998348999999985897-8999999928986402
Q ss_pred CCCCC
Q ss_conf 22242
Q gi|254780483|r 194 IRFSP 198 (581)
Q Consensus 194 i~~~~ 198 (581)
+.+..
T Consensus 161 ~~~g~ 165 (308)
T COG2017 161 FNLGN 165 (308)
T ss_pred EECCC
T ss_conf 55233
No 76
>pfam09451 ATG27 Autophagy-related protein 27.
Probab=34.80 E-value=24 Score=13.68 Aligned_cols=13 Identities=31% Similarity=0.843 Sum_probs=8.5
Q ss_pred HHHHCCHHHHHHH
Q ss_conf 3320110356899
Q gi|254780483|r 333 LIDWGWFYFIAKP 345 (581)
Q Consensus 333 ~vd~Gwf~~i~kp 345 (581)
.=-||||.||---
T Consensus 194 s~~wG~FTWlfi~ 206 (265)
T pfam09451 194 SGSWGWFTWLFIY 206 (265)
T ss_pred CCCCCHHHHHHHH
T ss_conf 8886503568799
No 77
>TIGR00263 trpB tryptophan synthase, beta subunit; InterPro: IPR006654 Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan , : L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H_2O It has two functional domains, each found in bacteria and plants on a separate subunit: alpha chain (IPR002028 from INTERPRO) is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and beta chain is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together on a single multifunctional protein . The beta chain of the enzyme, represented here, requires pyridoxal-phosphate as a cofactor. The pyridoxal-phosphate group is attached to a lysine residue. The region around this lysine residue also contains two histidine residues which are part of the pyridoxal-phosphate binding site.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process.
Probab=32.63 E-value=26 Score=13.34 Aligned_cols=10 Identities=30% Similarity=0.415 Sum_probs=5.1
Q ss_pred CCEEEECCCC
Q ss_conf 7268854566
Q gi|254780483|r 106 PIVTLLSPSN 115 (581)
Q Consensus 106 ~~v~Ll~~~~ 115 (581)
|-|.|+.-+.
T Consensus 263 PDV~LiGVEA 272 (412)
T TIGR00263 263 PDVELIGVEA 272 (412)
T ss_pred CCCEEEEEEC
T ss_conf 8605898733
No 78
>PRK03598 hypothetical protein; Provisional
Probab=32.61 E-value=27 Score=13.34 Aligned_cols=31 Identities=13% Similarity=0.207 Sum_probs=19.5
Q ss_pred EEEEECC-CCEEEEEEECCCCCCCCCCCCCEEE
Q ss_conf 9999769-9559999953571344788772688
Q gi|254780483|r 79 IGSINLK-GAQFDDLNLRGYHLDVSSNSPIVTL 110 (581)
Q Consensus 79 ~i~is~~-GG~I~~~~LK~Y~~~~~~ds~~v~L 110 (581)
++.++++ +|+|.++..++- +...++..+..|
T Consensus 43 ~V~vs~~v~G~V~~v~V~eG-d~Vk~Gq~La~L 74 (331)
T PRK03598 43 TVNLSFRVGGRLASLAVDEG-DAVKAGQVLGEL 74 (331)
T ss_pred EEEECCCCCEEEEEEECCCC-CEECCCCEEEEE
T ss_conf 99991327759999986897-987799889998
No 79
>KOG2639 consensus
Probab=31.73 E-value=27 Score=13.24 Aligned_cols=79 Identities=16% Similarity=0.254 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCC
Q ss_conf 999888778889999973145-115678999999985048786---7889999999999999999998769862-88753
Q gi|254780483|r 385 STANMKNIQPKIDELREKFKQ-SPPQVLQKAMIQLYKTHNINP---LAGCWPILLQIPVFFAIYKVISISLEMR-HAPFW 459 (581)
Q Consensus 385 Sm~kM~~lqP~i~~i~ekyk~-d~~~~~~~e~m~ly~~~~vnP---~~GClP~l~q~p~~~a~~~~~~~~ielr-~~~f~ 459 (581)
+++|.|.+.-++.+=+-+.++ .+.....+-.-+|-++|.+|- +--|+-.| .|.++|.++.+...++ |.+-
T Consensus 423 ~~~~i~~r~~~lr~r~~~~~~~~~a~~y~~tl~~l~~~~~irnk~ll~k~~~aL----~fviv~F~l~svp~~~~gl~L- 497 (685)
T KOG2639 423 LSAKIRARARSLRERLPTSCNSNPAENYFNTLAELQAKNRIRNKTLLIKCLRAL----WFVIVCFFLQSVPSLHMGLSL- 497 (685)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH----HHHHHHHHHHCCHHHHCCCCC-
T ss_conf 999999999987551343456884377785599886546642078999999999----999999998211887618874-
Q ss_pred CCCCCCCCC
Q ss_conf 410000335
Q gi|254780483|r 460 GWIKDLAAA 468 (581)
Q Consensus 460 ~Wi~dls~~ 468 (581)
+|+.=|++.
T Consensus 498 gW~AIlgA~ 506 (685)
T KOG2639 498 GWTAILGAI 506 (685)
T ss_pred CHHHHHHHH
T ss_conf 489999999
No 80
>KOG0904 consensus
Probab=30.86 E-value=27 Score=13.29 Aligned_cols=19 Identities=16% Similarity=0.354 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCCCCCEEEE
Q ss_conf 3333322233234635787
Q gi|254780483|r 236 DIEKSSISNFHESNSWLGI 254 (581)
Q Consensus 236 d~~~~~~~~~~~~~~Wva~ 254 (581)
++...+.+...-...||-.
T Consensus 433 ~~~~kk~k~~~~plaWvN~ 451 (1076)
T KOG0904 433 ESTKKKSKKEHCPLAWVNL 451 (1076)
T ss_pred CCCCCCCCCCCCCEEEEEE
T ss_conf 0023456644584367764
No 81
>pfam12127 YdfA_immunity SigmaW regulon antibacterial. This protein is found in bacteria. Proteins in this family are about 330 amino acids in length. The operon from which this protein is derived confers immunity for the host species to a broad range of antibacterial compounds, unlike the specific immunity proteins that are linked to and co-regulated with their antibiotic-synthesis proteins.
Probab=30.46 E-value=28 Score=13.13 Aligned_cols=18 Identities=22% Similarity=0.494 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHCCC
Q ss_conf 888778889999973145
Q gi|254780483|r 388 NMKNIQPKIDELREKFKQ 405 (581)
Q Consensus 388 kM~~lqP~i~~i~ekyk~ 405 (581)
+-|+++-+.+|.|+|-=.
T Consensus 259 ~EQEm~A~vqemrAkvVe 276 (321)
T pfam12127 259 REQEMKAKVQEMRAKVVE 276 (321)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 989999999997767312
No 82
>pfam05029 TIMELESS_C Timeless protein C terminal region. The timeless (tim) gene is essential for circadian function in Drosophila. Putative homologues of Drosophila tim have been identified in both mice and humans (mTim and hTIM, respectively). Mammalian TIM is not the true orthologue of Drosophila TIM, but is the likely orthologue of a fly gene, timeout (also called tim-2). mTim has been shown to be essential for embryonic development, but does not have substantiated circadian function. Some family members contain a SANT domain in this region.
Probab=30.35 E-value=29 Score=13.08 Aligned_cols=11 Identities=27% Similarity=0.537 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999998876
Q gi|254780483|r 345 PMFMLMSYFYN 355 (581)
Q Consensus 345 plf~~L~~l~~ 355 (581)
++.|+=+-|+.
T Consensus 298 ~L~WIqs~L~~ 308 (507)
T pfam05029 298 PLLWLQSCLIR 308 (507)
T ss_pred HHHHHHHHHHH
T ss_conf 99999988777
No 83
>pfam11120 DUF2636 Protein of unknown function (DUF2636). This family is conserved in the Enterobacteriaceae family. Several members are named as being YhjT, but the function is not known.
Probab=29.57 E-value=30 Score=12.99 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999888999999999998887
Q gi|254780483|r 364 IMLTTVFVKLLFFPLAKKQYVSTANMKN 391 (581)
Q Consensus 364 IIllTilikli~~PLt~ks~~Sm~kM~~ 391 (581)
|+=+-++--+||+||-|-.-+|..+++.
T Consensus 6 I~Qlv~lcAlIffpLGYla~~~~~r~r~ 33 (62)
T pfam11120 6 IVQLVLLCALIFFPLGYLARRSLRRIRT 33 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998409999875589999
No 84
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=29.27 E-value=30 Score=12.95 Aligned_cols=19 Identities=5% Similarity=0.123 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHCCC
Q ss_conf 9888778889999973145
Q gi|254780483|r 387 ANMKNIQPKIDELREKFKQ 405 (581)
Q Consensus 387 ~kM~~lqP~i~~i~ekyk~ 405 (581)
.+=+.|...+++|+++|.+
T Consensus 354 ~~G~~l~~~L~~L~~~~p~ 372 (442)
T TIGR03372 354 IKGDFLLDGFQQLAAEYPD 372 (442)
T ss_pred HHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999876878
No 85
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=29.05 E-value=30 Score=12.93 Aligned_cols=31 Identities=3% Similarity=0.081 Sum_probs=25.9
Q ss_pred CCCCEEEEECCEEEEEEECCCCEEEEEEECC
Q ss_conf 4587289976649999976995599999535
Q gi|254780483|r 66 SMSPRVELKNPSLIGSINLKGAQFDDLNLRG 96 (581)
Q Consensus 66 ~~~~~I~Iend~l~i~is~~GG~I~~~~LK~ 96 (581)
..+..+.|..+.++++||..-|.+.++...+
T Consensus 721 e~~~~~~v~g~~f~~~Fdk~tG~L~s~~~~G 751 (1030)
T PRK10340 721 DDRLSCTVRGYNFAITFSKVSGKLTSWQVNG 751 (1030)
T ss_pred ECCCEEEEEECCEEEEEECCCCEEEEEEECC
T ss_conf 4697799996999999985666289999899
No 86
>KOG3543 consensus
Probab=28.87 E-value=26 Score=13.39 Aligned_cols=22 Identities=27% Similarity=0.501 Sum_probs=13.0
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 99876986288753410000335
Q gi|254780483|r 446 VISISLEMRHAPFWGWIKDLAAA 468 (581)
Q Consensus 446 ~~~~~ielr~~~f~~Wi~dls~~ 468 (581)
+|...-|-.++.| .|-.||-+-
T Consensus 816 vlqqneehhgeaf-awwsdll~e 837 (1218)
T KOG3543 816 VLQQNEEHHGEAF-AWWSDLLSE 837 (1218)
T ss_pred HHHHHHHHCCHHH-HHHHHHHHH
T ss_conf 9973356412178-768888898
No 87
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; InterPro: IPR011772 This entry respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions . This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This entry identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologues of this gene are not found in plants which rely solely on the aerobic cyclase.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050661 NADP binding, 0015995 chlorophyll biosynthetic process.
Probab=28.85 E-value=30 Score=12.90 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=13.8
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
Q ss_conf 8999997314511567899999998504878
Q gi|254780483|r 395 KIDELREKFKQSPPQVLQKAMIQLYKTHNIN 425 (581)
Q Consensus 395 ~i~~i~ekyk~d~~~~~~~e~m~ly~~~~vn 425 (581)
+++.+++.=+ . ..++|=-+|-|+|++=
T Consensus 317 ~Ld~~rK~t~---~-~~nkeAIrLlr~h~i~ 343 (506)
T TIGR02026 317 TLDRFRKETT---V-SENKEAIRLLRQHNIL 343 (506)
T ss_pred HHHHHCCCCC---C-HHHHHHHHHHHHCCCE
T ss_conf 2312136675---2-4448999999761840
No 88
>pfam04912 Dynamitin Dynamitin. Dynamitin is a subunit of the microtubule-dependent motor complex and in implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS).
Probab=28.73 E-value=31 Score=12.89 Aligned_cols=49 Identities=18% Similarity=0.365 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Q ss_conf 99888778889999973145---1156789999999850-487867889999999
Q gi|254780483|r 386 TANMKNIQPKIDELREKFKQ---SPPQVLQKAMIQLYKT-HNINPLAGCWPILLQ 436 (581)
Q Consensus 386 m~kM~~lqP~i~~i~ekyk~---d~~~~~~~e~m~ly~~-~~vnP~~GClP~l~q 436 (581)
-++++.|.-+|++|.++-+. |. ..++.+-+||-. -..++++--||.+|.
T Consensus 266 e~Rl~~L~~k~e~lae~r~~~~~d~--~~~~KI~eLY~~l~~~~~~~~~LP~vl~ 318 (387)
T pfam04912 266 EARLQTVLGKMNSIAEKKAATDQDA--DTQSKISELYELMQKWDPVVSSLPDVVN 318 (387)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999998640323462--1566899999998757777635158999
No 89
>TIGR00934 2a38euk potassium uptake protein, Trk family; InterPro: IPR004773 The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and Triticum aestivum (Wheat). The proteins of Escherichia coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterised. The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.; GO: 0015079 potassium ion transmembrane transporter activity, 0006813 potassium ion transport, 0016021 integral to membrane.
Probab=28.36 E-value=31 Score=12.84 Aligned_cols=107 Identities=17% Similarity=0.431 Sum_probs=56.9
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf 85048786788999999999999999999876986288753410000335725666764102222027899999999999
Q gi|254780483|r 419 YKTHNINPLAGCWPILLQIPVFFAIYKVISISLEMRHAPFWGWIKDLAAADPTNIFTLFGILPFYLPGFMHVGIWPIIMS 498 (581)
Q Consensus 419 y~~~~vnP~~GClP~l~q~p~~~a~~~~~~~~ielr~~~f~~Wi~dls~~d~~~~~~~~~~~p~~~~~~~~~~ilp~l~~ 498 (581)
=++.||+| +++|||....+= -...|-|=-+-.-+.+. .++-|...++|....-. .+||++-
T Consensus 815 v~~~g~sp------------~wW~fft~~SaF---~nlGL~LTp~SM~sF~k-~~~~Ll~m~~fiiiGNT---GFP~fLR 875 (1197)
T TIGR00934 815 VRSKGVSP------------TWWGFFTAMSAF---ANLGLTLTPDSMVSFNK-AVYLLLLMIFFIIIGNT---GFPIFLR 875 (1197)
T ss_pred CCCCCCCC------------HHHHHHHHHHHH---HCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHC---CHHHHHH
T ss_conf 03167850------------568889999998---53788758665441112-46899999999997531---3468888
Q ss_pred HHHHHHHHCCCCCCCHHHHH-HHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999975288774689999-99996---8-999999987879999999999999999
Q gi|254780483|r 499 LSMFIQMKMSPPPADKGQAM-ILNWM---P-VVFVFALSSFPAGLIIYWSWSNVISIV 551 (581)
Q Consensus 499 ~~m~~~~k~~p~~~d~~q~~-~~~~m---p-~~~~~~~~~~~~gl~~y~~~~~~~~~~ 551 (581)
.-.|+.-|++|-- -|.| -+.|+ | .-|+.+ ||+|.+. |+...|+.+.
T Consensus 876 ~~IW~l~k~~P~~---S~~~E~~~fLlDHprrCFtlL---fP~~aTW-wL~~tL~gLn 926 (1197)
T TIGR00934 876 FIIWILFKISPDL---SKRKESLGFLLDHPRRCFTLL---FPSGATW-WLFLTLVGLN 926 (1197)
T ss_pred HHHHHHHEECCCH---HHHHHHHHHHHCCCHHHHHHH---HHHHHHH-HHHHHHHHHH
T ss_conf 8755542023321---225678776608612446653---0225799-9999999999
No 90
>pfam08216 DUF1716 Eukaryotic domain of unknown function (DUF1716). This domain is found in eukaryotic proteins. A human nuclear protein with this domain is thought to have a role in apoptosis.
Probab=28.28 E-value=31 Score=12.83 Aligned_cols=15 Identities=40% Similarity=0.629 Sum_probs=11.3
Q ss_pred HHHHHHHCCCCHHHHH
Q ss_conf 9999973145115678
Q gi|254780483|r 396 IDELREKFKQSPPQVL 411 (581)
Q Consensus 396 i~~i~ekyk~d~~~~~ 411 (581)
=+++|.||.||| +|.
T Consensus 42 Nqe~R~K~~d~P-eKF 56 (108)
T pfam08216 42 NQELRIKFPDDP-EKF 56 (108)
T ss_pred HHHHHHHCCCCH-HHH
T ss_conf 599986088988-999
No 91
>COG4449 Predicted protease of the Abi (CAAX) family [General function prediction only]
Probab=28.27 E-value=31 Score=12.83 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=10.6
Q ss_pred CCCCCCCEEEE----EECEEE-EEEEEC
Q ss_conf 33234635787----311058-999607
Q gi|254780483|r 244 NFHESNSWLGI----SDKYWA-SVFIPS 266 (581)
Q Consensus 244 ~~~~~~~Wva~----~qkYF~-salIP~ 266 (581)
+..+..||--+ +|--|. ..+.|.
T Consensus 275 sp~gqagwyiyga~~~~gif~vq~~~pr 302 (827)
T COG4449 275 SPVGQAGWYVYGAQGKDGIFTVQSLNPR 302 (827)
T ss_pred CCCCCCCEEEECCCCCCCEEEEECCCCH
T ss_conf 8776440489714577606998412613
No 92
>PRK09738 small toxic polypeptide; Provisional
Probab=28.03 E-value=31 Score=12.80 Aligned_cols=20 Identities=25% Similarity=0.469 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 63999999999999888999999
Q gi|254780483|r 360 FGIAIMLTTVFVKLLFFPLAKKQ 382 (581)
Q Consensus 360 yGiaIIllTilikli~~PLt~ks 382 (581)
|++-||.+|+++ |..||.+|
T Consensus 10 ~c~livC~TlLi---FT~ltR~s 29 (52)
T PRK09738 10 WCVLIVCLTLLI---FTYLTRKS 29 (52)
T ss_pred HHHHHHHHHHHH---HHHHHHHH
T ss_conf 338999999999---99997612
No 93
>pfam02411 MerT MerT mercuric transport protein. MerT is an mercuric transport integral membrane protein and is responsible for transport of the Hg2+ iron from periplasmic MerP (also part of the transport system) to mercuric reductase (MerE).
Probab=27.66 E-value=32 Score=12.76 Aligned_cols=69 Identities=14% Similarity=0.318 Sum_probs=38.6
Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC--------CCH---HHHHHHH
Q ss_conf 62887534100003357256667641022220278999999999999999997528877--------468---9999999
Q gi|254780483|r 453 MRHAPFWGWIKDLAAADPTNIFTLFGILPFYLPGFMHVGIWPIIMSLSMFIQMKMSPPP--------ADK---GQAMILN 521 (581)
Q Consensus 453 lr~~~f~~Wi~dls~~d~~~~~~~~~~~p~~~~~~~~~~ilp~l~~~~m~~~~k~~p~~--------~d~---~q~~~~~ 521 (581)
.=|.|= -||..|+.-+||.. .|..+.+ +.+|..- .+.+-|.. ..| .++|++.
T Consensus 33 ~lGvSG-awig~Lt~LePyRP------------~fi~~al--~~lg~a~--~~~yrp~~~C~~g~~Ca~p~~r~~~k~~~ 95 (116)
T pfam02411 33 LLGVSG-AWIGNLTLLEPYRP------------IFILAAL--VALFFAW--RRIYRPVEACEPGTVCAVPQVRKTYKVIF 95 (116)
T ss_pred HHCCCH-HHHHHHHHHHCCHH------------HHHHHHH--HHHHHHH--HHHHCCHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 962304-87743566502117------------9999999--9999999--99858652059998578811433788899
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 96899999998787999
Q gi|254780483|r 522 WMPVVFVFALSSFPAGL 538 (581)
Q Consensus 522 ~mp~~~~~~~~~~~~gl 538 (581)
|.-.++..++..||-=+
T Consensus 96 Wivt~~vl~~l~fPy~~ 112 (116)
T pfam02411 96 WLVALLALVAVTFPYVI 112 (116)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999737668
No 94
>pfam03056 consensus
Probab=27.04 E-value=33 Score=12.68 Aligned_cols=56 Identities=18% Similarity=0.372 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 32016399999999999988899999999-9998887788899999731451156789999999850
Q gi|254780483|r 356 LVGNFGIAIMLTTVFVKLLFFPLAKKQYV-STANMKNIQPKIDELREKFKQSPPQVLQKAMIQLYKT 421 (581)
Q Consensus 356 ~i~NyGiaIIllTilikli~~PLt~ks~~-Sm~kM~~lqP~i~~i~ekyk~d~~~~~~~e~m~ly~~ 421 (581)
|..+-|+.++++-|++=++++|.-.+|.. -...||.| .++.|+. ..-+..|+|-+.
T Consensus 151 ~~~~i~vga~~~~i~~~i~~~~cl~~sl~~~~~~~~vl-----~lk~k~~-----~~~~~~~e~~~~ 207 (213)
T pfam03056 151 WFIFIGVGALLLVIVIMIFVFPCLARSLVQVFLDMRVL-----LLKKKKM-----LQHRHLMELLKN 207 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHH-----HHHHHHHHHHCC
T ss_conf 99999999999999999999999998899999987999-----9989889-----869999999736
No 95
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=26.48 E-value=33 Score=12.61 Aligned_cols=35 Identities=9% Similarity=0.173 Sum_probs=21.3
Q ss_pred EECCEEEEEEECC-CCEEEEEEECCCCCCCCCCCCCEEE
Q ss_conf 9766499999769-9559999953571344788772688
Q gi|254780483|r 73 LKNPSLIGSINLK-GAQFDDLNLRGYHLDVSSNSPIVTL 110 (581)
Q Consensus 73 Iend~l~i~is~~-GG~I~~~~LK~Y~~~~~~ds~~v~L 110 (581)
|+.+. +.|+++ +|.|.++..++. +...++..++.|
T Consensus 46 V~~~i--v~Is~~VsG~V~~V~V~eg-q~VkkGq~L~~L 81 (348)
T PRK10476 46 IDADV--VHVASEVGGRIVELAVTEN-QAVKKGDLLFRI 81 (348)
T ss_pred EEEEE--EEEECCCCEEEEEEEECCC-CEECCCCEEEEE
T ss_conf 99799--9993434459999994699-986489789997
No 96
>PRK12860 transcriptional activator FlhC; Provisional
Probab=26.31 E-value=34 Score=12.59 Aligned_cols=18 Identities=39% Similarity=0.846 Sum_probs=16.4
Q ss_pred HHHHHHH-CCCCHHHHHHH
Q ss_conf 9999850-48786788999
Q gi|254780483|r 415 MIQLYKT-HNINPLAGCWP 432 (581)
Q Consensus 415 ~m~ly~~-~~vnP~~GClP 432 (581)
..+|||| .||+|=-|-||
T Consensus 40 LirLYKElrG~sPPKGmLP 58 (189)
T PRK12860 40 LIRLYKEVRGVSPPKGMLP 58 (189)
T ss_pred HHHHHHHHCCCCCCCCCCC
T ss_conf 9999999808999988788
No 97
>PRK09953 wcaD putative colanic acid biosynthesis protein; Provisional
Probab=25.81 E-value=34 Score=12.53 Aligned_cols=51 Identities=18% Similarity=0.234 Sum_probs=25.7
Q ss_pred EEEEEEECHHHHHHHHHHCCCCCCHHHHHHHHCCHHHH--HHHHHHHHHH-HHHHHHHHHH
Q ss_conf 89988500027887632201463101233320110356--8999999998-8763201639
Q gi|254780483|r 305 TNFLFAGAKEFPTIHHYEKDLAIPRFEMLIDWGWFYFI--AKPMFMLMSY-FYNLVGNFGI 362 (581)
Q Consensus 305 ~~~lY~GPk~~~~L~~~~~~l~~~~l~~~vd~Gwf~~i--~kplf~~L~~-l~~~i~NyGi 362 (581)
++.+|-|..-= +..|++|. -+++.||||+.+ +..++.+++. ++++-.|||.
T Consensus 311 ~f~ifNGAdvG---~tiDNGLY----lLi~YF~W~~vlL~~~~~~~~lk~Ml~~~~~n~~~ 364 (405)
T PRK09953 311 SFGIFNGADVG---KTIDNGLY----LLIIYFSWFAVLLSLWYMGKVLKMMLNAFGDNRNF 364 (405)
T ss_pred HCCCCCCHHHC---CCCCCCEE----EEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 43763525534---60258628----97616889999999999999999998622777673
No 98
>TIGR01726 HEQRo_perm_3TM amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family; InterPro: IPR010065 This entry represents one of several classes of multiple membrane spanning regions found in the inner membrane component of binding-protein-dependent transport systems. The region covered by this entry generally is predicted to contain three transmembrane helices. Substrate specificities attributed to members of this family include histidine, arginine, glutamine, glutamate, and (in Agrobacterium) the opines octopine and nopaline.; GO: 0005215 transporter activity, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=25.29 E-value=35 Score=12.46 Aligned_cols=12 Identities=17% Similarity=0.395 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q ss_conf 689999999878
Q gi|254780483|r 523 MPVVFVFALSSF 534 (581)
Q Consensus 523 mp~~~~~~~~~~ 534 (581)
-|+++..|+.-|
T Consensus 55 ~PlLvqlf~~yf 66 (99)
T TIGR01726 55 TPLLVQLFFIYF 66 (99)
T ss_pred HHHHHHHHHHHH
T ss_conf 079999999998
No 99
>COG3901 NosR Regulator of nitric oxide reductase transcription [Transcription]
Probab=25.19 E-value=27 Score=13.27 Aligned_cols=18 Identities=11% Similarity=0.078 Sum_probs=13.4
Q ss_pred EEEECCCCEEEEEEECCCC
Q ss_conf 9997699559999953571
Q gi|254780483|r 80 GSINLKGAQFDDLNLRGYH 98 (581)
Q Consensus 80 i~is~~GG~I~~~~LK~Y~ 98 (581)
+-++. -|.|+.++|.+|+
T Consensus 98 vglD~-qGvirG~KlvdH~ 115 (482)
T COG3901 98 VGLDP-QGVIRGAKLVDHH 115 (482)
T ss_pred EEECC-CCEEEEEEEECCC
T ss_conf 98757-7658411763167
No 100
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=25.11 E-value=35 Score=12.44 Aligned_cols=29 Identities=10% Similarity=0.098 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Q ss_conf 888778889999973145-115678999999
Q gi|254780483|r 388 NMKNIQPKIDELREKFKQ-SPPQVLQKAMIQ 417 (581)
Q Consensus 388 kM~~lqP~i~~i~ekyk~-d~~~~~~~e~m~ 417 (581)
|.-+-.|+-++-.|=||+ |+ +|-=++|++
T Consensus 34 k~~v~~pRKkaYadFYknYD~-~kdFerMr~ 63 (70)
T cd00927 34 KFLVNEPRKKAYADFYKTYDA-MKDFERMRK 63 (70)
T ss_pred HHHHCCHHHHHHHHHHHCCCH-HHHHHHHHH
T ss_conf 999736988999999981691-779999997
No 101
>pfam10095 DUF2333 Uncharacterized protein conserved in bacteria (DUF2333). Members of this family of hypothetical bacterial proteins have no known function.
Probab=24.95 E-value=30 Score=12.95 Aligned_cols=22 Identities=9% Similarity=0.200 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99999999975137898876544
Q gi|254780483|r 13 LSVIIVYAWQNFYVYPRIEEMNN 35 (581)
Q Consensus 13 Ls~~ill~w~~~~~~p~~e~~~~ 35 (581)
|..++++|| +|...|..-.+.+
T Consensus 25 ll~~~~lg~-~WS~eP~~fdv~~ 46 (337)
T pfam10095 25 LLILYLLGI-YWSFEPAAFDVQT 46 (337)
T ss_pred HHHHHHHHH-EEECCCCCCCHHH
T ss_conf 999999984-1426887788367
No 102
>PRK10189 hypothetical protein; Provisional
Probab=24.92 E-value=35 Score=12.42 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHCCCCCC
Q ss_conf 9999999999999999---9999874799834
Q gi|254780483|r 537 GLIIYWSWSNVISIVQ---QAVIMKMHGAEIG 565 (581)
Q Consensus 537 gl~~y~~~~~~~~~~q---q~~i~~~~~~~~~ 565 (581)
|+.+++.+..++-..- -.|++|....||+
T Consensus 446 ~~~~~~~v~~vl~~~r~~~g~W~~k~~~~~~~ 477 (481)
T PRK10189 446 GMFLDWAVRGVLFYWRMVTGRWLWKYPRSEPQ 477 (481)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHH
T ss_conf 69999999999999999479675568888721
No 103
>pfam04284 DUF441 Protein of unknown function (DUF441). Predicted to be an integral membrane protein.
Probab=24.85 E-value=36 Score=12.41 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9988763201639999999999998889999999
Q gi|254780483|r 350 MSYFYNLVGNFGIAIMLTTVFVKLLFFPLAKKQY 383 (581)
Q Consensus 350 L~~l~~~i~NyGiaIIllTilikli~~PLt~ks~ 383 (581)
+.++.+.--|||+.|+.+.+++-+..-..+.+..
T Consensus 38 fp~le~~Gi~~Gi~iLti~vL~PiAsGkI~~~~l 71 (140)
T pfam04284 38 FPFLEKKGINWGVTILTIAVLVPIATGKIGFKDL 71 (140)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 7999976953759999999987200487578999
No 104
>pfam07745 Glyco_hydro_53 Glycosyl hydrolase family 53. This domain belongs to family 53 of the glycosyl hydrolase classification. These enzymes are enzymes are endo-1,4- beta-galactanases (EC:3.2.1.89). The structure of this domain is known and has a TIM barrel fold.
Probab=24.81 E-value=20 Score=14.25 Aligned_cols=66 Identities=6% Similarity=0.148 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88877888999997314511567899999998-------------------50487867889999999999999999998
Q gi|254780483|r 388 NMKNIQPKIDELREKFKQSPPQVLQKAMIQLY-------------------KTHNINPLAGCWPILLQIPVFFAIYKVIS 448 (581)
Q Consensus 388 kM~~lqP~i~~i~ekyk~d~~~~~~~e~m~ly-------------------~~~~vnP~~GClP~l~q~p~~~a~~~~~~ 448 (581)
.+..|+--|+.|.+||..|- +=.|+-=-| ..+-+.|-| |.-.+-.+...+.
T Consensus 213 tl~~l~~~l~~l~~~y~K~v---~VvEtayp~t~~~~D~~~N~~~~~~~~~~~yp~t~~G-------Q~~~l~~l~~~v~ 282 (332)
T pfam07745 213 TLENLRTNLKDMASRYGKPV---MVVETAYPWTLEDGDGHGNPLPEYGFDLSGYPASVQG-------QATYLRDLAQLVS 282 (332)
T ss_pred HHHHHHHHHHHHHHHHCCCE---EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH-------HHHHHHHHHHHHH
T ss_conf 39999999999999978967---9998168775656788888576422345799988899-------9999999999997
Q ss_pred HHHHHCCCCCCCCCCC
Q ss_conf 7698628875341000
Q gi|254780483|r 449 ISLEMRHAPFWGWIKD 464 (581)
Q Consensus 449 ~~ielr~~~f~~Wi~d 464 (581)
+.- =|+..+|.|-+.
T Consensus 283 ~v~-~~G~GvfYWEP~ 297 (332)
T pfam07745 283 AVP-SDGLGVFYWEPA 297 (332)
T ss_pred HCC-CCEEEEEEECCC
T ss_conf 179-984799996154
No 105
>TIGR01523 ATPase-IID_K-Na potassium/sodium efflux P-type ATPase, fungal-type; InterPro: IPR006414 Initially described as a calcium efflux ATPase , more recent work has shown that the Schizosaccharomyces pombe CTA3 gene is in fact a potassium ion efflux pump . These sequences form the clade which represents the fungal P-type ATPases which are responsible for potassium and sodium efflux. The degree to which these pumps show preference for sodium or potassium varies. This group of ATPases has been classified by phylogentic analysis as type IID . ; GO: 0015662 ATPase activity coupled to transmembrane movement of ions phosphorylative mechanism, 0006812 cation transport, 0016021 integral to membrane.
Probab=24.73 E-value=31 Score=12.88 Aligned_cols=51 Identities=18% Similarity=0.367 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHHH----------HHHHHHHHH-HHHHHHHHHHHHHHHCCCCH
Q ss_conf 76320163999999999-----99988899----------999999999-88877888999997314511
Q gi|254780483|r 354 YNLVGNFGIAIMLTTVF-----VKLLFFPL----------AKKQYVSTA-NMKNIQPKIDELREKFKQSP 407 (581)
Q Consensus 354 ~~~i~NyGiaIIllTil-----ikli~~PL----------t~ks~~Sm~-kM~~lqP~i~~i~ekyk~d~ 407 (581)
|=++.|=|=+|.|+-=| +..-.||| --.++=||. -|-+-||-+ -||-..|.
T Consensus 762 ~LL~~NV~~~~~L~~GL~FRDE~~~SVFPlSPVE~LW~~~~TS~FP~MGLGlE~A~PD~---M~R~PHD~ 828 (1001)
T TIGR01523 762 QLLVENVAEVLLLVVGLVFRDEVGKSVFPLSPVEVLWIIVVTSSFPAMGLGLEKAAPDL---MDRLPHDS 828 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHEEECCCCEECCCCHHHHHHHHHHHHCCCCHHCCHHHCCCCC---CCCCCCCC
T ss_conf 99999899898777621025047740057753787777787505530010023338630---15777987
No 106
>pfam05280 FlhC Flagellar transcriptional activator (FlhC). This family consists of several bacterial flagellar transcriptional activator (FlhC) proteins. FlhC combines with FlhD to form a regulatory complex in E. coli, this complex has been shown to be a global regulator involved in many cellular processes as well as a flagellar transcriptional activator.
Probab=24.49 E-value=36 Score=12.36 Aligned_cols=18 Identities=39% Similarity=0.846 Sum_probs=16.3
Q ss_pred HHHHHHH-CCCCHHHHHHH
Q ss_conf 9999850-48786788999
Q gi|254780483|r 415 MIQLYKT-HNINPLAGCWP 432 (581)
Q Consensus 415 ~m~ly~~-~~vnP~~GClP 432 (581)
..+|||| .|++|=-|-||
T Consensus 40 LirLYKElrG~sPPKGmLP 58 (176)
T pfam05280 40 LIKLYKEVRGVSPPKGMLP 58 (176)
T ss_pred HHHHHHHHCCCCCCCCCCC
T ss_conf 9999999728999988778
No 107
>pfam07358 DUF1482 Protein of unknown function (DUF1482). This family consists of several Enterobacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=24.37 E-value=28 Score=13.16 Aligned_cols=12 Identities=33% Similarity=1.088 Sum_probs=5.7
Q ss_pred HHCCCCHHHHHHHH
Q ss_conf 50487867889999
Q gi|254780483|r 420 KTHNINPLAGCWPI 433 (581)
Q Consensus 420 ~~~~vnP~~GClP~ 433 (581)
.+.++. |||+|.
T Consensus 34 ~EQki~--g~C~Pv 45 (57)
T pfam07358 34 AEQKIR--GGCYPV 45 (57)
T ss_pred HHCCCC--CCCEEH
T ss_conf 865478--887133
No 108
>pfam05462 Dicty_CAR Slime mold cyclic AMP receptor. This family consists of cyclic AMP receptor (CAR) proteins from slime molds. CAR proteins are responsible for controlling development in Dictyostelium discoideum.
Probab=23.90 E-value=37 Score=12.28 Aligned_cols=99 Identities=19% Similarity=0.308 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCH
Q ss_conf 99999999999876986288753410-000335725666764102222027899999999999999-9997528877468
Q gi|254780483|r 437 IPVFFAIYKVISISLEMRHAPFWGWI-KDLAAADPTNIFTLFGILPFYLPGFMHVGIWPIIMSLSM-FIQMKMSPPPADK 514 (581)
Q Consensus 437 ~p~~~a~~~~~~~~ielr~~~f~~Wi-~dls~~d~~~~~~~~~~~p~~~~~~~~~~ilp~l~~~~m-~~~~k~~p~~~d~ 514 (581)
+|+..+....+..+++-+| +| -|| .|++.+- + .-|++|.+.-+..=.|+.|.+. +..+-+...+.|
T Consensus 126 iPlI~tII~la~~~y~~~G-~W-CWI~~~y~~yr--F-------~~Fy~Pf~iI~~~sailv~lt~ryty~vi~~~vs~- 193 (305)
T pfam05462 126 LPLISTIIMLSKNTIEPVG-NW-CWIGEQYVGYR--F-------GLFYGPFFIIWGTSAILVGLTSRYTYQVIRNSVSD- 193 (305)
T ss_pred CCHHHHHHHHHCCCCCCCC-CE-EEECCCCCCEE--E-------EEEECCHHHHHHHHHHEEEEEHHHHHHHHHCCCCH-
T ss_conf 2199999999707723567-64-89748642157--7-------65300579987650331453078889998528880-
Q ss_pred HHHHHHHH------HHHHHHHHHHHH------HHHHHHHHHHHHHH
Q ss_conf 99999999------689999999878------79999999999999
Q gi|254780483|r 515 GQAMILNW------MPVVFVFALSSF------PAGLIIYWSWSNVI 548 (581)
Q Consensus 515 ~q~~~~~~------mp~~~~~~~~~~------~~gl~~y~~~~~~~ 548 (581)
.|.|-|.+ -.++|+ .++-| --|+..|=.+.|++
T Consensus 194 ~k~kh~~yqFkl~nyI~vfl-vcWiFa~inri~n~~~~~~~~~n~l 238 (305)
T pfam05462 194 NKDKHMTYQFKLINYIIVFL-VCWVFAVVNRILNGLGYFPTAPNIL 238 (305)
T ss_pred HHHHHHHEEEEEHHHHHHHH-HHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 34312113553235799999-9999999999864566620699999
No 109
>TIGR02951 DMSO_dmsB dimethylsulfoxide reductase, chain B; InterPro: IPR014297 This family consists of the iron-sulphur subunit, or chain B, of the anaerobic dimethyl sulphoxide reductase enzyme. Chains A and B are catalytic, while chain C is a membrane anchor..
Probab=23.67 E-value=29 Score=13.03 Aligned_cols=16 Identities=19% Similarity=0.447 Sum_probs=10.4
Q ss_pred CCEEEEEEEEECC-CCE
Q ss_conf 8426999997168-835
Q gi|254780483|r 164 NNILFERTISLDE-HYL 179 (581)
Q Consensus 164 ~g~~i~kt~t~~~-~Y~ 179 (581)
=|..++|+|++.+ +|.
T Consensus 29 vG~~fRRVyey~GG~w~ 45 (162)
T TIGR02951 29 VGVLFRRVYEYEGGSWT 45 (162)
T ss_pred CCCCCCEEEEEECCEEE
T ss_conf 46652237883289067
No 110
>pfam10319 7TM_GPCR_Srj Serpentine type 7TM GPCR chemoreceptor Srj. Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srj is part of the Str superfamily of chemoreceptors. The srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'.
Probab=23.55 E-value=37 Score=12.24 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=11.0
Q ss_pred HHHH-HHHHHHHHHHHHH
Q ss_conf 9999-9999999999999
Q gi|254780483|r 430 CWPI-LLQIPVFFAIYKV 446 (581)
Q Consensus 430 ClP~-l~q~p~~~a~~~~ 446 (581)
+.|+ ++.+|+.+-+..-
T Consensus 253 iIP~ilm~iP~~~~~~~P 270 (310)
T pfam10319 253 IIPICISFSPCLLAWYSP 270 (310)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 988999998899999999
No 111
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=23.50 E-value=38 Score=12.23 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 77888999997314
Q gi|254780483|r 391 NIQPKIDELREKFK 404 (581)
Q Consensus 391 ~lqP~i~~i~ekyk 404 (581)
.+.|.+++|-++|.
T Consensus 32 ~i~P~~e~La~~~~ 45 (103)
T cd02985 32 KIYPTMVKLSRTCN 45 (103)
T ss_pred HHHHHHHHHHHHCC
T ss_conf 63089999997779
No 112
>TIGR02794 tolA_full protein TolA; InterPro: IPR014161 TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cut-offs are based largely on conserved operon structure. The Tol-Pal complex is required for maintaining outer membrane integrity, and is also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins OmpC, PhoE and LamB..
Probab=23.39 E-value=38 Score=12.22 Aligned_cols=21 Identities=5% Similarity=0.165 Sum_probs=8.3
Q ss_pred HHHHHHH--HHHHHHHHH-HHCCC
Q ss_conf 9999999--999999997-51378
Q gi|254780483|r 7 YFVAIAL--SVIIVYAWQ-NFYVY 27 (581)
Q Consensus 7 ~iIai~L--s~~ill~w~-~~~~~ 27 (581)
++|.++| +++++|.|. .++..
T Consensus 4 ~~~s~~lH~~l~~~L~~~~~~~~~ 27 (452)
T TIGR02794 4 FLLSVLLHILLLGLLILGASLTHS 27 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999971233013
No 113
>pfam11037 Musclin Insulin-resistance promoting peptide in skeletal muscle. Musclin is a muscle derived secretory peptide which induces insulin resistance in vitro. It encodes a 130 amino acid sequence including a NH(2) terminal 30 amino acid signal sequence. Musclin expression level is tightly regulated by nutritional changes.
Probab=22.84 E-value=21 Score=14.04 Aligned_cols=22 Identities=23% Similarity=0.146 Sum_probs=12.6
Q ss_pred CCEEEEECCEEEE----EEECCCCEE
Q ss_conf 8728997664999----997699559
Q gi|254780483|r 68 SPRVELKNPSLIG----SINLKGAQF 89 (581)
Q Consensus 68 ~~~I~Iend~l~i----~is~~GG~I 89 (581)
.+.|.+|||+++- +|+-.|.-+
T Consensus 65 deLVSLENdV~ETKKKRSF~gFGsPl 90 (132)
T pfam11037 65 DELVSLENDVTETKKKRSFSGFGSPL 90 (132)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf 99986412666653115678779826
No 114
>pfam03273 Baculo_gp64 Baculovirus gp64 envelope glycoprotein family. This family includes the gp64 glycoprotein from baculovirus as well as other viruses.
Probab=22.82 E-value=39 Score=12.14 Aligned_cols=41 Identities=15% Similarity=0.278 Sum_probs=20.9
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 123332011035689999999988763201639999999999998
Q gi|254780483|r 330 FEMLIDWGWFYFIAKPMFMLMSYFYNLVGNFGIAIMLTTVFVKLL 374 (581)
Q Consensus 330 l~~~vd~Gwf~~i~kplf~~L~~l~~~i~NyGiaIIllTilikli 374 (581)
|+++.||-+ +||+--|. .++++.++||=+.+.++.++++++
T Consensus 462 L~di~~~~~-G~l~~~l~---~~~~g~~~~~~li~~vi~~l~cm~ 502 (508)
T pfam03273 462 LTDILDYPS-GWLNGKLG---SLLLGHIGNFVLIFGVILFLVCMI 502 (508)
T ss_pred HHHHHHCCC-HHHHHHHH---HHHHCCCCEEEHHHHHHHHHHHHC
T ss_conf 778651753-34543247---775567401302345677553010
No 115
>KOG0190 consensus
Probab=22.26 E-value=40 Score=12.06 Aligned_cols=19 Identities=37% Similarity=0.616 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHCCCCH
Q ss_conf 8877888999997314511
Q gi|254780483|r 389 MKNIQPKIDELREKFKQSP 407 (581)
Q Consensus 389 M~~lqP~i~~i~ekyk~d~ 407 (581)
-+.|.|..+||-|+|+||+
T Consensus 399 Ck~laP~yeeLAe~~k~~~ 417 (493)
T KOG0190 399 CKALAPIYEELAEKYKDDE 417 (493)
T ss_pred HHHHHHHHHHHHHHHCCCC
T ss_conf 5655479999999965898
No 116
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=22.24 E-value=40 Score=12.06 Aligned_cols=37 Identities=32% Similarity=0.279 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999988899999999999888778889999
Q gi|254780483|r 363 AIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDEL 399 (581)
Q Consensus 363 aIIllTilikli~~PLt~ks~~Sm~kM~~lqP~i~~i 399 (581)
||-+-+-+-.=++-|.+...|-=|+---.+||-+-++
T Consensus 151 aIy~t~~LAP~Ll~~iAvAAYSYMALVPiIQPpimka 187 (375)
T COG1883 151 AIYLTNKLAPELLGAIAVAAYSYMALVPIIQPPIMKA 187 (375)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 6876022488888899999999887733014188888
No 117
>PRK11103 mannose-specific PTS system protein IID; Provisional
Probab=22.16 E-value=40 Score=12.05 Aligned_cols=13 Identities=15% Similarity=0.674 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780483|r 491 GIWPIIMSLSMFI 503 (581)
Q Consensus 491 ~ilp~l~~~~m~~ 503 (581)
++||++....+|.
T Consensus 236 ~LLPl~~t~~~y~ 248 (277)
T PRK11103 236 GLVPLLLTFACMW 248 (277)
T ss_pred HHHHHHHHHHHHH
T ss_conf 4799999999999
No 118
>KOG1517 consensus
Probab=22.07 E-value=40 Score=12.04 Aligned_cols=154 Identities=18% Similarity=0.265 Sum_probs=67.1
Q ss_pred HHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCCCC---HHHHHHHH-HCCCCC
Q ss_conf 99999998504878---6788999999999999999999876986-2887534100003357---25666764-102222
Q gi|254780483|r 412 QKAMIQLYKTHNIN---PLAGCWPILLQIPVFFAIYKVISISLEM-RHAPFWGWIKDLAAAD---PTNIFTLF-GILPFY 483 (581)
Q Consensus 412 ~~e~m~ly~~~~vn---P~~GClP~l~q~p~~~a~~~~~~~~iel-r~~~f~~Wi~dls~~d---~~~~~~~~-~~~p~~ 483 (581)
|---.++|=++|++ | ---|||.|| |+.+=--=++.-+-| |--.+--|+-||+-.= || ++.|. -..+=.
T Consensus 453 QLTAFevWLd~gse~r~P-PeQLPiVLQ--VLLSQvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPY-VLKLLQS~a~EL 528 (1387)
T KOG1517 453 QLTAFEVWLDYGSESRTP-PEQLPIVLQ--VLLSQVHRLRALVLLARFLDLGPWAVDLALSVGIFPY-VLKLLQSSAREL 528 (1387)
T ss_pred HHHHHHHHHHHCCCCCCC-HHHCCHHHH--HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHH-HHHHHCCCHHHH
T ss_conf 778999998706546898-375453999--9999989999999999876343145344200143799-999861663764
Q ss_pred CHHHHHHHHHHHHHHH-------------HHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHH-----------H
Q ss_conf 0278999999999999-------------9999975288-7746899999999689999999878799-----------9
Q gi|254780483|r 484 LPGFMHVGIWPIIMSL-------------SMFIQMKMSP-PPADKGQAMILNWMPVVFVFALSSFPAG-----------L 538 (581)
Q Consensus 484 ~~~~~~~~ilp~l~~~-------------~m~~~~k~~p-~~~d~~q~~~~~~mp~~~~~~~~~~~~g-----------l 538 (581)
-|. .+-|+.=++++ -+++-|-+.| +..+|.|+.|-.| +...+..+|+-| +
T Consensus 529 rpi--LVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAF---VLAviv~nf~lGQ~acl~~~li~i 603 (1387)
T KOG1517 529 RPI--LVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAF---VLAVIVRNFKLGQKACLNGNLIGI 603 (1387)
T ss_pred HHH--HHHHHHHHHHCCCHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHHH---HHHHHHCCCCHHHHHHCCCCHHHH
T ss_conf 255--999889987148414788886067616899816767799888889999---999998154046787616218899
Q ss_pred HHHHHHHHHHHHHHHHH------------HHHHCCCCCCHHHHHHHHH
Q ss_conf 99999999999999999------------9874799834798988885
Q gi|254780483|r 539 IIYWSWSNVISIVQQAV------------IMKMHGAEIGLIDRLRSTF 574 (581)
Q Consensus 539 ~~y~~~~~~~~~~qq~~------------i~~~~~~~~~~~~~~~~~~ 574 (581)
+|+-....-..++-||+ -.|-+|.+.....++-.-+
T Consensus 604 Cle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~L 651 (1387)
T KOG1517 604 CLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLL 651 (1387)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHH
T ss_conf 888743883079999999998887630626431040001789999985
No 119
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=21.98 E-value=40 Score=12.02 Aligned_cols=14 Identities=50% Similarity=0.883 Sum_probs=8.6
Q ss_pred HHHCCCCHHHHHHHH
Q ss_conf 850487867889999
Q gi|254780483|r 419 YKTHNINPLAGCWPI 433 (581)
Q Consensus 419 y~~~~vnP~~GClP~ 433 (581)
|=--|||| +|..|.
T Consensus 227 ylPlKvN~-aGVmPi 240 (399)
T PRK12417 227 YLSIKVNP-AGGIPI 240 (399)
T ss_pred EEEEEECC-CCCHHH
T ss_conf 56675245-553189
No 120
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=21.92 E-value=40 Score=12.02 Aligned_cols=26 Identities=15% Similarity=0.300 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHH------HHHHHHCCCCCCC
Q ss_conf 78999999999999------9997513789887
Q gi|254780483|r 5 WNYFVAIALSVIIV------YAWQNFYVYPRIE 31 (581)
Q Consensus 5 Kn~iIai~Ls~~il------l~w~~~~~~p~~e 31 (581)
++.+++++|+..+. -|| +||+.|..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~k~~Gw-~WYnep~~~ 33 (247)
T PRK13703 2 NKALLPLLLCCFIFPASGKDAGW-QWYNEKINP 33 (247)
T ss_pred CHHHHHHHHHHHHCCCCCCCCCC-EECCCCCCC
T ss_conf 33699999998717655688761-421788666
No 121
>COG3976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.90 E-value=40 Score=12.01 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=20.4
Q ss_pred CCEEEEEEECCCCEEEEEEECCCCCC
Q ss_conf 66499999769955999995357134
Q gi|254780483|r 75 NPSLIGSINLKGAQFDDLNLRGYHLD 100 (581)
Q Consensus 75 nd~l~i~is~~GG~I~~~~LK~Y~~~ 100 (581)
+..+.+.+.-+||+|..++|.+|+++
T Consensus 61 ~g~lqv~vtIk~grItaikvl~h~~d 86 (135)
T COG3976 61 YGILQVQVTIKGGRITAIKVLKHPSD 86 (135)
T ss_pred CCEEEEEEEEECCCEEEEEEECCCCC
T ss_conf 42689999982583888998448887
No 122
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=21.72 E-value=41 Score=11.99 Aligned_cols=16 Identities=38% Similarity=0.694 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999999751
Q gi|254780483|r 9 VAIALSVIIVYAWQNF 24 (581)
Q Consensus 9 Iai~Ls~~ill~w~~~ 24 (581)
++++|+.++-..|.+.
T Consensus 21 ~~itl~~~~ss~w~y~ 36 (275)
T COG3031 21 LAITLSVFLSSFWLYY 36 (275)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999885
No 123
>pfam05934 MCLC Mid-1-related chloride channel (MCLC). This family consists of several mid-1-related chloride channels. mid-1-related chloride channel (MCLC) proteins function as a chloride channel when incorporated in the planar lipid bilayer.
Probab=21.46 E-value=35 Score=12.42 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780483|r 430 CWPILLQIPVFFA 442 (581)
Q Consensus 430 ClP~l~q~p~~~a 442 (581)
-+|+++|+|++|-
T Consensus 349 eiPv~l~iPVLi~ 361 (577)
T pfam05934 349 EIPAFFHLPVLIF 361 (577)
T ss_pred HCCHHHCCHHHHH
T ss_conf 3626520369999
No 124
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=20.97 E-value=42 Score=11.88 Aligned_cols=50 Identities=18% Similarity=0.334 Sum_probs=26.5
Q ss_pred EEEECCEEEEEEECCCCEEEEEEECC-CCCCCCCCCCCEEEECCCCCCCCCEEEEECC
Q ss_conf 89976649999976995599999535-7134478877268854566655310000013
Q gi|254780483|r 71 VELKNPSLIGSINLKGAQFDDLNLRG-YHLDVSSNSPIVTLLSPSNTKNAYFAELDYV 127 (581)
Q Consensus 71 I~Iend~l~i~is~~GG~I~~~~LK~-Y~~~~~~ds~~v~Ll~~~~~~~~y~~~~G~~ 127 (581)
-...++-+.+++|..| +++.+. |. .+...|.+.....++.. .+.-.+.|.
T Consensus 72 ~~~~~e~Lt~~V~~dg----slk~tGk~~--Kd~~nP~I~~gfe~n~~-s~~~~s~wl 122 (288)
T COG4814 72 YKAGTESLTMTVDVDG----SLKVTGKIS--KDAKNPIIEFGFEDNTA-SGLDQSKWL 122 (288)
T ss_pred CCCCCCCEEEEECCCC----CEEEEEEEC--CCCCCCEEEEEEECCCC-CHHHHHHHH
T ss_conf 1334565699981788----378856613--45778718999863867-624578999
No 125
>KOG0637 consensus
Probab=20.76 E-value=42 Score=11.85 Aligned_cols=69 Identities=19% Similarity=0.380 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999988899999999999888778889999973145115678999999985048786788999999999999999
Q gi|254780483|r 365 MLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQSPPQVLQKAMIQLYKTHNINPLAGCWPILLQIPVFFAIY 444 (581)
Q Consensus 365 IllTilikli~~PLt~ks~~Sm~kM~~lqP~i~~i~ekyk~d~~~~~~~e~m~ly~~~~vnP~~GClP~l~q~p~~~a~~ 444 (581)
-+.|++-.+-.+|...--...|.+ |-|.+||...-+.|.+++|. +||- -||+-+.++-++ -++|
T Consensus 285 ~i~~lltW~a~f~f~LF~TDfmG~------------~vy~GDp~a~~~S~a~~~Y~-~GV~--~G~~GL~ins~~-lgi~ 348 (498)
T KOG0637 285 LIVTLLTWIAWFPFLLFDTDFMGR------------EVYGGDPKADENSEAKKLYN-AGVR--MGCLGLMLNSIV-LGIY 348 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCH------------HHHCCCCCCCCCHHHHHHHH-HCCC--CCHHHHHHHHHH-HHHH
T ss_conf 999999999999999998886045------------76578999995266899887-4344--235899998899-9999
Q ss_pred HHHHH
Q ss_conf 99987
Q gi|254780483|r 445 KVISI 449 (581)
Q Consensus 445 ~~~~~ 449 (581)
..+..
T Consensus 349 S~~~~ 353 (498)
T KOG0637 349 SLLVE 353 (498)
T ss_pred HHHHH
T ss_conf 99999
No 126
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=20.63 E-value=30 Score=12.93 Aligned_cols=14 Identities=14% Similarity=0.121 Sum_probs=8.5
Q ss_pred CCCEEEEEEECCCC
Q ss_conf 99559999953571
Q gi|254780483|r 85 KGAQFDDLNLRGYH 98 (581)
Q Consensus 85 ~GG~I~~~~LK~Y~ 98 (581)
-||+......++++
T Consensus 127 DG~D~~~~vh~~~~ 140 (420)
T COG0499 127 DGGDLTKLVHLERP 140 (420)
T ss_pred CCCCEEEEEECCCH
T ss_conf 47320210000548
No 127
>pfam04744 Monooxygenase_B Monooxygenase subunit B protein. Family of membrane associated monooxygenases (EC 1.13.12.-) which utilize O(2) to oxidize their substrate. Family members include both ammonia and methane monooxygenases involved in the oxidation of their respective substrates. These enzymes are multi-subunit complexes. This family represents the B subunit of the enzyme; the A subunit is thought to contain the active site..
Probab=20.46 E-value=43 Score=11.81 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=10.6
Q ss_pred CCCCCCEEEEEEEEEEECHHHHHHHH
Q ss_conf 45788603678998850002788763
Q gi|254780483|r 295 TILPGKSITTTNFLFAGAKEFPTIHH 320 (581)
Q Consensus 295 ~i~pg~~~~~~~~lY~GPk~~~~L~~ 320 (581)
.|+||++.+.+...==..=|.++|..
T Consensus 320 pI~PGETk~v~v~a~dA~WEveRLs~ 345 (381)
T pfam04744 320 PIAPGETKTVDVEAKDAAWEVQRLSD 345 (381)
T ss_pred CCCCCCCEEEEEEEECHHHHHHHHHH
T ss_conf 76999625899997301455998887
No 128
>pfam05829 Adeno_PX Adenovirus late L2 mu core protein (Protein X). This family consists of several Adenovirus late L2 mu core protein or Protein X sequences.
Probab=20.38 E-value=36 Score=12.40 Aligned_cols=14 Identities=36% Similarity=0.719 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 8899999999999999
Q gi|254780483|r 428 AGCWPILLQIPVFFAI 443 (581)
Q Consensus 428 ~GClP~l~q~p~~~a~ 443 (581)
||.||.|+ ||.-|.
T Consensus 14 GGfLPaLi--PiiAAa 27 (44)
T pfam05829 14 GGFLPALI--PIIAAA 27 (44)
T ss_pred CCCHHHHH--HHHHHH
T ss_conf 66537899--999999
No 129
>PRK12722 transcriptional activator FlhC; Provisional
Probab=20.38 E-value=43 Score=11.80 Aligned_cols=36 Identities=28% Similarity=0.681 Sum_probs=24.6
Q ss_pred HHHHHHHHH-CCCCHHHHHHHH----------HHHHHHHHHHHHHHH
Q ss_conf 999999850-487867889999----------999999999999998
Q gi|254780483|r 413 KAMIQLYKT-HNINPLAGCWPI----------LLQIPVFFAIYKVIS 448 (581)
Q Consensus 413 ~e~m~ly~~-~~vnP~~GClP~----------l~q~p~~~a~~~~~~ 448 (581)
.+..+|||+ +|++|=-|-||- =|---+|+..|.++.
T Consensus 38 ~RLirLYkE~~G~sPPKGmLPfStDWFmtW~pNIHsSlF~n~y~~l~ 84 (185)
T PRK12722 38 GRLIKLYKELRGVSPPKGMLPFSTDWFMTWEPNIHSSLFYNIYRFLL 84 (185)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 99999999973899998788875889987020368999999999999
Done!