Query gi|254780483|ref|YP_003064896.1| putative inner membrane protein translocase component YidC [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 581
No_of_seqs 197 out of 1773
Neff 8.0
Searched_HMMs 33803
Date Wed Jun 1 13:22:15 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780483.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3blc_A Inner membrane protein 100.0 0 0 379.9 18.2 297 55-360 21-330 (330)
2 >3bs6_A Inner membrane protein 100.0 2.4E-39 7E-44 305.2 22.7 265 67-340 2-279 (280)
3 >3dcd_A Galactose mutarotase r 97.1 0.015 4.3E-07 36.7 11.2 119 70-196 2-138 (307)
4 >1snz_A Aldose 1-epimerase; mu 96.9 0.011 3.4E-07 37.4 9.1 111 69-196 22-139 (310)
5 >1jov_A HI1317; hypothetical p 96.7 0.048 1.4E-06 32.9 11.1 30 68-97 21-50 (270)
6 >1lur_A Aldose 1-epimerase; vi 96.2 0.079 2.3E-06 31.3 10.1 115 67-196 11-133 (305)
7 >2hta_A Putative enzyme relate 96.2 0.087 2.6E-06 31.0 10.0 31 67-97 40-70 (309)
8 >2cir_A Hexose-6-phosphate mut 95.5 0.18 5.3E-06 28.7 17.5 240 69-316 11-294 (297)
9 >1yga_A Hypothetical 37.9 kDa 95.3 0.2 6E-06 28.3 9.3 113 67-196 9-137 (308)
10 >3imh_A Galactose-1-epimerase; 95.0 0.25 7.4E-06 27.6 10.6 108 70-196 20-137 (305)
11 >1z45_A GAL10 bifunctional pro 94.6 0.24 7.2E-06 27.7 7.9 130 67-196 18-178 (345)
12 >3k25_A SLR1438 protein; struc 89.5 1.3 3.8E-05 22.5 18.1 123 69-196 14-159 (289)
13 >1nsx_A Galactose mutarotase; 88.3 1.5 4.5E-05 21.9 9.9 120 69-196 13-165 (347)
14 >3bvx_A Alpha-mannosidase 2; f 69.5 6.1 0.00018 17.6 11.8 30 68-97 157-186 (435)
15 >1v54_D Cytochrome C oxidase s 67.2 2.7 7.9E-05 20.1 1.6 32 390-421 31-62 (107)
16 >1o7d_D Lysosomal alpha-mannos 61.3 8.5 0.00025 16.5 3.6 27 70-96 2-28 (282)
17 >2wyh_A Alpha-mannosidase; hyd 58.5 9.4 0.00028 16.2 13.9 94 165-269 127-221 (285)
18 >3bga_A Beta-galactosidase; NY 46.4 14 0.00042 14.8 8.3 111 72-191 2-118 (282)
19 >1jz7_A Lactase, beta-galactos 46.0 15 0.00043 14.8 11.2 33 64-96 8-40 (291)
20 >3h9p_A Putative triphosphorib 42.0 17 0.00049 14.4 4.8 30 412-443 62-91 (96)
21 >2akh_Y Preprotein translocase 39.2 18 0.00054 14.1 9.3 53 420-473 189-242 (360)
22 >1k1x_A 4-alpha-glucanotransfe 39.1 18 0.00054 14.0 4.9 29 68-96 15-44 (69)
23 >3fqd_A Protein DHP1, 5'-3' ex 37.2 11 0.00034 15.5 0.7 40 344-395 322-364 (395)
24 >3ezq_A Tumor necrosis factor 31.3 24 0.00071 13.2 3.4 35 386-421 27-61 (62)
25 >2cr7_A Paired amphipathic hel 28.9 26 0.00077 12.9 4.5 36 395-430 16-52 (80)
26 >1z65_A PRPLP, prion-like prot 27.6 27 0.00081 12.8 1.5 14 356-369 4-17 (30)
27 >1k1x_A 4-alpha-glucanotransfe 25.9 29 0.00087 12.5 4.7 44 153-197 72-121 (207)
28 >2om6_A Probable phosphoserine 24.6 31 0.00092 12.4 3.8 31 387-417 28-60 (85)
29 >3f42_A Protein HP0035; helico 23.9 32 0.00094 12.3 2.4 12 389-400 12-23 (99)
30 >1yew_A Particulate methane mo 23.8 32 0.00095 12.3 4.1 46 336-381 7-74 (80)
31 >1ulv_A Glucodextranase; GH fa 23.0 33 0.00098 12.2 8.9 43 161-203 95-138 (275)
32 >1qop_B Tryptophan synthase be 22.2 34 0.001 12.0 3.4 30 391-422 19-51 (101)
33 >1x1q_A Tryptophan synthase be 21.1 36 0.0011 11.9 2.8 33 392-426 42-78 (134)
34 >2zxe_A Na, K-ATPase alpha sub 20.5 37 0.0011 11.8 5.1 64 357-421 46-115 (154)
No 1
>>3blc_A Inner membrane protein OXAA; YIDC, membrane assembly facilitator, chaperone, periplasmic domain, transmembrane, chaperone; 2.50A {Escherichia coli K12} (A:)
Probab=100.00 E-value=0 Score=379.88 Aligned_cols=297 Identities=15% Similarity=0.292 Sum_probs=245.3
Q ss_pred CCCCCCCHHCCCCCCEEEEECCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCC-CC
Q ss_conf 66667610001458728997664999997699559999953571344788772688545666553100000134787-75
Q gi|254780483|r 55 AVLIDDRAQALSMSPRVELKNPSLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTKNAYFAELDYVSTAN-NI 133 (581)
Q Consensus 55 ~~~~~~~~~~~~~~~~I~Iend~l~i~is~~GG~I~~~~LK~Y~~~~~~ds~~v~Ll~~~~~~~~y~~~~G~~~~~~-~~ 133 (581)
............++++|+||||+++++||++||+|+++.||+|+.+.+++++++.+.. .....|++.+|++..++ +.
T Consensus 21 ~~~~~~~~~~~~~~~~i~v~nd~~~~~~s~~Gg~I~~~~Lk~yk~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~ 98 (330)
T 3blc_A 21 GSAADQGVPASGQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLET--SPQFIYQAQSGLTGRDGPDN 98 (330)
T ss_dssp ------------CCCEEEEECSSCEEEEETBTCCEEEEEEEEEESSTTCSSEEEEEEE--CSSCEEEEEEEEESTTCTTS
T ss_pred CCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCEEECCC--CCCCCCEEEEEEECCCCCCC
T ss_conf 6654455666777668999888299999899988989884788654357885364257--77654125653311457665
Q ss_pred CCCCCCCCEECCCCCCC----CCCCCCEEEEECCCCEEEEEEEEEC-CCCEEEEEEEECCCCCCCCCCCCCEEEECCCCC
Q ss_conf 43334321001566656----6666504774158842699999716-883589998631576664222421012025686
Q gi|254780483|r 134 ELPNSNTVWNLISGKIL----TPTTPIKLVFKNANNILFERTISLD-EHYLFKIVDTVTNNSIDQIRFSPRGRIMRHKPQ 208 (581)
Q Consensus 134 ~~p~~~~~~~~~~~~~l----~~~~~v~l~~~~~~g~~i~kt~t~~-~~Y~i~i~~~v~N~s~~~i~~~~~~~i~r~~~~ 208 (581)
..+..++.|.+...... .++..++|+|.+++|++|+|+|+|+ ++|+++++++|+|.|..++.+.++..+.++..+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~~~~~~g~~i~k~yt~~~~~Y~i~~~~~v~n~s~~~~~~~~~~~~~~~~~~ 178 (330)
T 3blc_A 99 PANGPRPLYNVEKDAYVLAEGQNELQVPXTYTDAAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQSITL 178 (330)
T ss_dssp GGGCSCCBCBCSCSEEECCTTCCEEEEEEEEECTTSCEEEEEEEEETTCCEEEEEEEEECCSSSCEEEEEEEEEEEESSC
T ss_pred CCCCCCCCEEECCCEEEECCCCCCCEEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEECCCCC
T ss_conf 57776520341376057304676517999994575389999999627862389999997156776433431143114667
Q ss_pred CC-----CCC--CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECEEEEEEEECCCCCEEEEEEECCCC
Q ss_conf 54-----442--00110000015654321001333333322233234635787311058999607898415899831676
Q gi|254780483|r 209 TA-----TNT--FGVQEGFIAVLGDKSLVEQKYSDIEKSSISNFHESNSWLGISDKYWASVFIPSKETSFHSQFKYLSDG 281 (581)
Q Consensus 209 ~~-----~~~--~~~~~g~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~Wva~~qkYF~salIP~~~~~~~~~~~~~~~~ 281 (581)
.. .+. ...+.|++....++.+++.+++|++++......+..+|+|++||||++|+||+++.......... .
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~W~g~~~~YF~sa~ip~~~~~~~~~~~~~--~ 256 (330)
T 3blc_A 179 PPHLDTGSSNFALHTFRGAAYSTPDAAYAAYAFDTIADNENLNISSKGGWVAXLQQYFATAWIPHNDGTNNFYTANL--G 256 (330)
T ss_dssp CCCC----------CCEEEEEECSSCSSCEECHHHHHTTCCCEEEESSCEEEEEESSEEEEEEEESSSCEEEEEEEE--E
T ss_pred CCCCCCCCCCCEEEECCCCEEECCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCHHEEEECCCCCCCEEEEEEC--C
T ss_conf 64444455541012113412772576512313232100133121234322123203203046037775411455406--8
Q ss_pred CCCEEEEEECCCCCCCCCCEEEEEEEEEEECHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6410222202444457886036789988500027887632201463101233320110356899999999887632016
Q gi|254780483|r 282 HARYQAKFSANEITILPGKSITTTNFLFAGAKEFPTIHHYEKDLAIPRFEMLIDWGWFYFIAKPMFMLMSYFYNLVGNF 360 (581)
Q Consensus 282 ~~~y~~~~~~~~~~i~pg~~~~~~~~lY~GPk~~~~L~~~~~~l~~~~l~~~vd~Gwf~~i~kplf~~L~~l~~~i~Ny 360 (581)
.+.|.+++..+..+++||++.+.++++|+|||+|++|++++++| |++||||||+||+|||||+|+|||++||||
T Consensus 257 ~~~~~~~~~~~~~~i~pg~~~~~~~~~Y~GPk~~~~L~~~~~~l-----~~~id~Gwf~~iakpl~~lL~~l~~~vgNw 330 (330)
T 3blc_A 257 NGIAAIGYKSQPVLVQPGQTGAXNSTLWVGPEIQDKXAAVAPHL-----DLTVDYGWLWFISQPLLVPRGSLEHHHHHH 330 (330)
T ss_dssp TTEEEEEEECCCEEECTTCEEEEEEEEEEEECCHHHHHHHSTTC-----CCHHHHHHHHHHTSCCCCCCCC--------
T ss_pred CCEEEEEEECCCEEECCCCEEEEEEEEEECCCCHHHHHHHHCCH-----HEEEECCCHHHHHCCCEEECCHHCCCCCCC
T ss_conf 96269998657468789974789989997608199998665192-----007854308874200140552001444579
No 2
>>3bs6_A Inner membrane protein OXAA; YIDC/OXA1/ALB3 family, membrane insertion, chaperone, SEC translocon, periplasmic domain, beta supersandwich fold; HET: PG4 PGE 2PE; 1.80A {Escherichia coli} (A:)
Probab=100.00 E-value=2.4e-39 Score=305.22 Aligned_cols=265 Identities=16% Similarity=0.272 Sum_probs=218.4
Q ss_pred CCCEEEEECCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCC-CCCCCCCCCCEECC
Q ss_conf 58728997664999997699559999953571344788772688545666553100000134787-75433343210015
Q gi|254780483|r 67 MSPRVELKNPSLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTKNAYFAELDYVSTAN-NIELPNSNTVWNLI 145 (581)
Q Consensus 67 ~~~~I~Iend~l~i~is~~GG~I~~~~LK~Y~~~~~~ds~~v~Ll~~~~~~~~y~~~~G~~~~~~-~~~~p~~~~~~~~~ 145 (581)
++++|+||||+++++||++||+|+++.||+|+.+.+++++.+.+ . ++....|++.+|+...+. +...+..++.|+..
T Consensus 2 ~~~~i~vend~~~~~~s~~Gg~i~s~~Lk~yk~~~~~~~~~~l~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (280)
T 3bs6_A 2 QGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLL-E-TSPQFIYQAQSGLTGRDGPDNPANGPRPLYNVE 79 (280)
T ss_dssp --CEEEEECSSCEEEEETBTTEEEEEEEEEEESSTTCCSEEEEE-E-EETTEEEEEEEEEESTTCTTSGGGSSCCBCBCS
T ss_pred CCCEEEEECCCEEEEEECCCCEEEEEECCCCCCCCCCCCCEEEE-C-CCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEC
T ss_conf 97699998896999998999889598878886443799985981-7-888763046730101345544577765204633
Q ss_pred CCCC-C---CCCCCCEEEEECCCCEEEEEEEEEC-CCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCC-----CCCC-
Q ss_conf 6665-6---6666504774158842699999716-88358999863157666422242101202568654-----4420-
Q gi|254780483|r 146 SGKI-L---TPTTPIKLVFKNANNILFERTISLD-EHYLFKIVDTVTNNSIDQIRFSPRGRIMRHKPQTA-----TNTF- 214 (581)
Q Consensus 146 ~~~~-l---~~~~~v~l~~~~~~g~~i~kt~t~~-~~Y~i~i~~~v~N~s~~~i~~~~~~~i~r~~~~~~-----~~~~- 214 (581)
.... + .+..+|+|++.+++|++|+|+|+|+ ++|+++++++|+|.|..++...++..+.+...+.. .+.+
T Consensus 80 ~~~~~~~~~~~~~~vtf~~~~~~g~~i~k~ytf~~~~Y~i~~~~~v~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (280)
T 3bs6_A 80 KDAYVLAEGQNELQVPXTYTDAAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFA 159 (280)
T ss_dssp CSEEECCTTCSEEEEEEEEECTTCCEEEEEEEEETTCCEEEEEEEEECCSSSCEEEEEEEEEEEESSCC-----------
T ss_pred CCEEEECCCCCCEEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCE
T ss_conf 75477426775317999970676279999999459962787566640466666423247998705667644455565301
Q ss_pred -CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECEEEEEEEECCCCCEEEEEEECCCCCCCEEEEEECCC
Q ss_conf -0110000015654321001333333322233234635787311058999607898415899831676641022220244
Q gi|254780483|r 215 -GVQEGFIAVLGDKSLVEQKYSDIEKSSISNFHESNSWLGISDKYWASVFIPSKETSFHSQFKYLSDGHARYQAKFSANE 293 (581)
Q Consensus 215 -~~~~g~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~Wva~~qkYF~salIP~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 293 (581)
..|.|++.+.+++++++.+++|++++......+.++|+|++||||++|+||+++.......... ..+.+.+++..+.
T Consensus 160 ~~~~~g~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~W~g~~~kYF~sa~ip~~~~~~~~~~~~~--~~~~~~~~~~~~~ 237 (280)
T 3bs6_A 160 LHTFRGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAXLQQYFATAWIPHNDGTNNFYTANL--GNGIAAIGYKSQP 237 (280)
T ss_dssp --CCCEEEEECTTTCCEEECHHHHHTTCCCEEEEESCEEEEEETTEEEEEEEESSSEEEEEEEEE--ETTEEEEEEECCC
T ss_pred EEECCCCEEECCCCCCEECCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCCEEEECC--CCCCEEEEEECCC
T ss_conf 22013540322676520103345442221012345236774115356899528986520465306--8981589997675
Q ss_pred CCCCCCCEEEEEEEEEEECHHHHHHHHHHCCCCCCHHHHHHHHCCHH
Q ss_conf 44578860367899885000278876322014631012333201103
Q gi|254780483|r 294 ITILPGKSITTTNFLFAGAKEFPTIHHYEKDLAIPRFEMLIDWGWFY 340 (581)
Q Consensus 294 ~~i~pg~~~~~~~~lY~GPk~~~~L~~~~~~l~~~~l~~~vd~Gwf~ 340 (581)
.+++||++.+.++++|+|||+|++|++++.+| |++||||||.
T Consensus 238 ~~i~pg~~~~~~~~~Y~GPk~~~~L~~~~~~l-----e~~id~GwF~ 279 (280)
T 3bs6_A 238 VLVQPGQTGAXNSTLWVGPEIQDKXAAVAPHL-----DLTVDHHHHH 279 (280)
T ss_dssp EEECTTCEEEEEEEEEEESCCHHHHHHHSTTG-----GGGTC-----
T ss_pred EEECCCCEEEEEEEEEECCCCHHHHHHHHCCC-----CCCCCCCCCC
T ss_conf 68689975789989998428099998774797-----7009876558
No 3
>>3dcd_A Galactose mutarotase related enzyme; Q5FKD7 LAR33 NESG X-RAY, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Lactobacillus acidophilus} (A:)
Probab=97.08 E-value=0.015 Score=36.68 Aligned_cols=119 Identities=17% Similarity=0.228 Sum_probs=63.9
Q ss_pred EEEEECCEEEEEEECCCCEEEEEEECCCCCCC--CCCCCCE----EEECCCCCCCCCEEEEECCCCCCCCCCCCC----C
Q ss_conf 28997664999997699559999953571344--7887726----885456665531000001347877543334----3
Q gi|254780483|r 70 RVELKNPSLIGSINLKGAQFDDLNLRGYHLDV--SSNSPIV----TLLSPSNTKNAYFAELDYVSTANNIELPNS----N 139 (581)
Q Consensus 70 ~I~Iend~l~i~is~~GG~I~~~~LK~Y~~~~--~~ds~~v----~Ll~~~~~~~~y~~~~G~~~~~~~~~~p~~----~ 139 (581)
.|+|+|+.++++|++.||.|.++..++-...+ +.+.... -++.|-..+ ...-.+...++....|-+ +
T Consensus 2 ~i~L~n~~~~v~i~~~Ga~i~s~~~~~~~~~~~~~~~~~~~~~~~p~l~P~~gr---~~~~~~~~~g~~~~~~~HG~~~~ 78 (307)
T 3dcd_A 2 DYTIENNXIKVVISDHGAEIQSVKSAHTDEEFXWQANPEIWGRHAPVLFPIVGR---LKNDEYTYKGKTYHLGQHGFARN 78 (307)
T ss_dssp EEEEECSSEEEEEETBTTEEEEEEETTTCCBCBCCCCTTTCCCSSCEEBSCSSC---CGGGEEEETTEEEECCTTBSGGG
T ss_pred EEEEECCCEEEEEECCCCEEEEEEECCCCEEEEECCCHHHHCCCCCEEEEECCE---ECCCEEEECCEEEEECCCCCCCC
T ss_conf 899997999999974496999999799994888718868817899789998188---08995879999973157798667
Q ss_pred CCEECCCCCCCCCCCCCEEEEECC--------CCEEEEEEEEECCCCEEEEEEEECCCCCCCCCC
Q ss_conf 210015666566666504774158--------842699999716883589998631576664222
Q gi|254780483|r 140 TVWNLISGKILTPTTPIKLVFKNA--------NNILFERTISLDEHYLFKIVDTVTNNSIDQIRF 196 (581)
Q Consensus 140 ~~~~~~~~~~l~~~~~v~l~~~~~--------~g~~i~kt~t~~~~Y~i~i~~~v~N~s~~~i~~ 196 (581)
..|++... .+..+++..... -...++.+|++.++ .+.++++++|.+.++..+
T Consensus 79 ~~w~v~~~----~~~~~~~~~~~~~~~~~~~P~~~~l~~~y~L~~~-~l~~~~~v~N~~~~~~p~ 138 (307)
T 3dcd_A 79 ADFEVENH----TKESITFLLKDNEETRKVYPFKFEFRVNYNLXNN-LLEENFSVVNKSDETXIF 138 (307)
T ss_dssp SBCEEEEE----ETTEEEEEEECCHHHHHHSCCCEEEEEEEEEETT-EEEEEEEEEECSSSCEEE
T ss_pred CEEEEEEE----CCCEEEEEEECCHHHHCCCCCCEEEEEEEEECCC-EEEEEEEEECCCCCEEEE
T ss_conf 14589996----4980899985084450058985599999995288-079999997388841899
No 4
>>1snz_A Aldose 1-epimerase; mutarotase, galactosemia, isomerase; 2.20A {Homo sapiens} (A:1-80,A:115-344)
Probab=96.86 E-value=0.011 Score=37.43 Aligned_cols=111 Identities=12% Similarity=0.144 Sum_probs=67.1
Q ss_pred CEEEEECCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 72899766499999769955999995357134478877268854566655310000013478775433343210015666
Q gi|254780483|r 69 PRVELKNPSLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTKNAYFAELDYVSTANNIELPNSNTVWNLISGK 148 (581)
Q Consensus 69 ~~I~Iend~l~i~is~~GG~I~~~~LK~Y~~~~~~ds~~v~Ll~~~~~~~~y~~~~G~~~~~~~~~~p~~~~~~~~~~~~ 148 (581)
..++++||.++++|-+.||+|.++++++= +.....|.|-. + +...|..+.++.+..-+ +..+..|.+...
T Consensus 22 ~~~~~~~~~~~~~~~~~ga~~~~~~~~~~----~g~~~~~~~~~-~-~~~~y~~~~~~~~~~~g---~ar~~~w~v~~~- 91 (310)
T 1snz_A 22 EKFQLQSDLLRVDIISWGCTITALEVKDR----QGRASDVVLGF-A-ELEGYLQKQPYFGAVIG---RFDKVLWTPRVL- 91 (310)
T ss_dssp EEEEEECSSCEEEEETBTTEEEEEEEECT----TSCEEECBCCC-S-SHHHHHSSCSCTTCEEC---SGGGSBCEEEEE-
T ss_pred EEEEEECCCEEEEEECCCCEEEEEEEECC----CCCEEEEEECC-C-CHHHHHHCCCCCCCEEE---ECEEEEEEECCC-
T ss_conf 99999879999999775909999998888----99887727789-9-98999427886687865---202689883154-
Q ss_pred CCCCCCCCEEEEECCC-------CEEEEEEEEECCCCEEEEEEEECCCCCCCCCC
Q ss_conf 5666665047741588-------42699999716883589998631576664222
Q gi|254780483|r 149 ILTPTTPIKLVFKNAN-------NILFERTISLDEHYLFKIVDTVTNNSIDQIRF 196 (581)
Q Consensus 149 ~l~~~~~v~l~~~~~~-------g~~i~kt~t~~~~Y~i~i~~~v~N~s~~~i~~ 196 (581)
+.+++|+....+ ...++-+|+++++ .++.+++|.++++..+
T Consensus 92 ----~~~v~l~l~~~e~~~~yP~~f~l~vty~L~~~---~L~i~~~N~g~~~~pf 139 (310)
T 1snz_A 92 ----SNGVQFSRISPDGEEGYPGELKVWVTYTLDGG---ELIVNYRAQASQATPV 139 (310)
T ss_dssp ----TTEEEEEEEECTTGGGCCSCEEEEEEEEEETT---EEEEEEEEEESSCEEC
T ss_pred ----CCEEEEEEEECCCCCCCCCCEEEEEEEEECCC---CEEEEEECCCCCCCCC
T ss_conf ----42699999806776898741558999990488---2377884157878663
No 5
>>1jov_A HI1317; hypothetical protein, structure 2 function project, S2F, structural genomics, unknown function; 1.57A {Haemophilus influenzae} (A:)
Probab=96.66 E-value=0.048 Score=32.86 Aligned_cols=30 Identities=27% Similarity=0.308 Sum_probs=27.0
Q ss_pred CCEEEEECCEEEEEEECCCCEEEEEEECCC
Q ss_conf 872899766499999769955999995357
Q gi|254780483|r 68 SPRVELKNPSLIGSINLKGAQFDDLNLRGY 97 (581)
Q Consensus 68 ~~~I~Iend~l~i~is~~GG~I~~~~LK~Y 97 (581)
-+.++|+|+.++++|.+.||.|.++..++-
T Consensus 21 ~~~~~L~n~~~~~~v~~~Ga~i~s~~~~~~ 50 (270)
T 1jov_A 21 IPVLHLKHAVGTAKISLQGAQLISWKPQNA 50 (270)
T ss_dssp EEEEEEEETTEEEEEETBTTEEEEEEETTC
T ss_pred CCEEEEECCCEEEEEECCCCEEEEEEECCC
T ss_conf 028999489989999899968999997999
No 6
>>1lur_A Aldose 1-epimerase; vitamin B12, methyltransferase, structural genomics, structure-based function assignment, decarboxylase, PSI; 1.85A {Caenorhabditis elegans} (A:1-72,A:107-339)
Probab=96.24 E-value=0.079 Score=31.32 Aligned_cols=115 Identities=10% Similarity=0.133 Sum_probs=72.1
Q ss_pred CCCEEEEECCE-EEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCEECC
Q ss_conf 58728997664-99999769955999995357134478877268854566655310000013478775433343210015
Q gi|254780483|r 67 MSPRVELKNPS-LIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTKNAYFAELDYVSTANNIELPNSNTVWNLI 145 (581)
Q Consensus 67 ~~~~I~Iend~-l~i~is~~GG~I~~~~LK~Y~~~~~~ds~~v~Ll~~~~~~~~y~~~~G~~~~~~~~~~p~~~~~~~~~ 145 (581)
....++++|+. ++++|-+.||+|.++++.+= +.+.+.|.| .-+ +-..|..+.+..+..- -+..+..|++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~ga~~~~~~~~~~----~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~---g~ar~~~W~v~ 81 (305)
T 1lur_A 11 ASGFIEIANKQGLTATLLPFGATLAKLTFPDK----NGKNQDLVL-GFD-TIDEFEKDAASIGKTV---GRLGYRKWEVV 81 (305)
T ss_dssp CCCCEEEECSSSCEEEEETBTTEEEEEEEECT----TSCEEECBC-CCS-SHHHHHHCSSCTTCEE---CSGGGSBCEEE
T ss_pred CCCEEEEECCCCCEEEEECCCCEEEEEEEECC----CCCEEEEEE-CCC-CHHHHHHCCCCCCCEE---CCCCEECCEEE
T ss_conf 57569999699959999896929999998888----898814288-899-9899953888606588---77313521147
Q ss_pred CCCCCCCCCCCEEEEECCC-------CEEEEEEEEECCCCEEEEEEEECCCCCCCCCC
Q ss_conf 6665666665047741588-------42699999716883589998631576664222
Q gi|254780483|r 146 SGKILTPTTPIKLVFKNAN-------NILFERTISLDEHYLFKIVDTVTNNSIDQIRF 196 (581)
Q Consensus 146 ~~~~l~~~~~v~l~~~~~~-------g~~i~kt~t~~~~Y~i~i~~~v~N~s~~~i~~ 196 (581)
.. ++.+++|+....+ ...++-+|+++++-. ++.+++|.+.++..+
T Consensus 82 ~~----~~~~V~f~l~~~e~~~gyP~~~~l~vtytL~~~l~--~~~~v~N~~~~~~pf 133 (305)
T 1lur_A 82 RH----APESVSFSVRANEQDDGLPGDAKIDVTYTVNDRNQ--LIIEHHATCDTPGLL 133 (305)
T ss_dssp EE----ETTEEEEEEEEEHHHHSSSSEEEEEEEEEECTTSE--EEEEEEEECSSCEEC
T ss_pred EE----CCCCEEEEEECCCCCCCCCCEEEEEEEEEECCCCE--EEEEEEEECCCCCEE
T ss_conf 70----58722999981787678774489999999656986--999999755987057
No 7
>>2hta_A Putative enzyme related to aldose 1-epimerase; carbohydrate, mutarotase, YEAD, GALM, sugar phosphate, isomerase; 1.90A {Salmonella typhimurium} PDB: 2htb_A (A:)
Probab=96.15 E-value=0.087 Score=30.98 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=27.2
Q ss_pred CCCEEEEECCEEEEEEECCCCEEEEEEECCC
Q ss_conf 5872899766499999769955999995357
Q gi|254780483|r 67 MSPRVELKNPSLIGSINLKGAQFDDLNLRGY 97 (581)
Q Consensus 67 ~~~~I~Iend~l~i~is~~GG~I~~~~LK~Y 97 (581)
.-+.|+|+|+.++++|.+.||.|.++++++=
T Consensus 40 ~~~~~~L~~~~~~~~i~~~Ga~i~s~~~~~~ 70 (309)
T 2hta_A 40 DLDLIVVDHPQVKASFALQGAHLLSWKPVGE 70 (309)
T ss_dssp TEEEEEEEETTEEEEEETBTTEEEEEEETTS
T ss_pred CCCEEEEECCCEEEEEECCCCEEEEEEECCC
T ss_conf 9768999689889999888989989990999
No 8
>>2cir_A Hexose-6-phosphate mutarotase; mannose-6-phosphate-1-epimerase, galactose-6-phosphate-1- epimerase, hypothetical protein, isomerase; HET: BG6; 1.6A {Saccharomyces cerevisiae} PDB: 2ciq_A* 2cis_A* (A:)
Probab=95.50 E-value=0.18 Score=28.68 Aligned_cols=240 Identities=13% Similarity=0.092 Sum_probs=99.3
Q ss_pred CEEEEECCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCC---EEEEECCCC-CCCCCCCCC----CC
Q ss_conf 7289976649999976995599999535713447887726885456665531---000001347-877543334----32
Q gi|254780483|r 69 PRVELKNPSLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTKNAY---FAELDYVST-ANNIELPNS----NT 140 (581)
Q Consensus 69 ~~I~Iend~l~i~is~~GG~I~~~~LK~Y~~~~~~ds~~v~Ll~~~~~~~~y---~~~~G~~~~-~~~~~~p~~----~~ 140 (581)
+.++|+|+.++++|++.||.|.++++++-.. +..+.+. ............ +...|-... ++....+.| ..
T Consensus 11 ~~~~L~n~~~~~~i~~~Ga~i~s~~~~~~~~-l~~~~~~-~~~~~~~~~g~~~~~~p~rg~~~~~g~~~~~~~HG~~~~~ 88 (297)
T 2cir_A 11 VLTHPADETTSVHILKYGATVYSWKLKSEEQ-LWLSTAA-KLDGSKPVRGGIPLVFPVFGKNSTDEHLSKLPQHGLARNS 88 (297)
T ss_dssp EEEETTEEEEEEEEETBTTEEEEEEETTEEC-BCBCTTC-CCSSSSCCSBSBCEEBSCSSCCSSSTTGGGSCTTBSGGGS
T ss_pred EEECCCCCCEEEEEECCCCEEEEEEECCEEE-EECCCHH-HCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 9990699978999987892999999899898-8438777-6179997558883988330889889862689888522564
Q ss_pred CEECCCCCCCCCCCCCEEEE----EC-------CCCEEEEEEEEECCCCEEEEEEEECCCCC-CC--CCC--CCCEEEEC
Q ss_conf 10015666566666504774----15-------88426999997168835899986315766-64--222--42101202
Q gi|254780483|r 141 VWNLISGKILTPTTPIKLVF----KN-------ANNILFERTISLDEHYLFKIVDTVTNNSI-DQ--IRF--SPRGRIMR 204 (581)
Q Consensus 141 ~~~~~~~~~l~~~~~v~l~~----~~-------~~g~~i~kt~t~~~~Y~i~i~~~v~N~s~-~~--i~~--~~~~~i~r 204 (581)
.|++...... ....++++. .+ .-...++.+|+++++ .+.+..+++|.++ .+ +.+ .+|..+..
T Consensus 89 ~w~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~y~L~~~-~L~i~~~v~n~g~~~~~p~~~g~HpyF~l~~ 166 (297)
T 2cir_A 89 TWEFLGQTKE-NPPTVQFGLKPEIANPELTKLWPMDYLLILTVELGSD-YLKTAIEVENTSSSKELKFNWLFHTYFRIED 166 (297)
T ss_dssp BCEEEEEEEE-TTEEEEEEECGGGSCHHHHHHSCCCCEEEEEEEECSS-EEEEEEEEECCCSSCCEEEEEEECCEEECSC
T ss_pred CEEEEEECCC-CCCEEEEEEEECCCCHHHHHCCCCEEEEEEEEEECCC-EEEEEEEEEECCCCCCEEEEEECCCEEECCC
T ss_conf 3699886058-8746999998467997798218841799999998898-4899999991997742287785262684486
Q ss_pred CCCCCC-----CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECEEEEEEEECCCCCEEEEEEEC-
Q ss_conf 568654-----44200110000015654321001333333322233234635787311058999607898415899831-
Q gi|254780483|r 205 HKPQTA-----TNTFGVQEGFIAVLGDKSLVEQKYSDIEKSSISNFHESNSWLGISDKYWASVFIPSKETSFHSQFKYL- 278 (581)
Q Consensus 205 ~~~~~~-----~~~~~~~~g~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~Wva~~qkYF~salIP~~~~~~~~~~~~~- 278 (581)
...... ...+...++........... ....-+.-. .......|+-..++-.-.++.-..+..........
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (297)
T 2cir_A 167 IEGTMVSNLAGMKLYDQLLKESYVDKHPVVT---FNQETDVIY-QNVSAERAIQIVDKGVQIHTLKRYNLPDTVVWNPWI 242 (297)
T ss_dssp GGGEEEESCTTCEEEETTTTEEEECCSSSBC---CSSCEEEEE-CCCCTTCCEEEEETTEEEEEEEEESCCEEEEEECHH
T ss_pred CCCEEECCCCCCEEEEECCCCCCCCCCCCCC---CCCCEEEEE-CCCCCCEEEEEECCCCEEEEEEECCCCEEEEECCCC
T ss_conf 4523882688860564036776256787241---685404798-279987399995899609999938999799979974
Q ss_pred ----------C--CCCCCEEEE--EECCCCCCCCCCEEEEEEEEEEECHHHH
Q ss_conf ----------6--766410222--2024444578860367899885000278
Q gi|254780483|r 279 ----------S--DGHARYQAK--FSANEITILPGKSITTTNFLFAGAKEFP 316 (581)
Q Consensus 279 ----------~--~~~~~y~~~--~~~~~~~i~pg~~~~~~~~lY~GPk~~~ 316 (581)
+ ...+.+... -....+.+.||++.+...++-+.+..++
T Consensus 243 ~~~~~~~~~EP~~~~~~~~~~e~~~~~~~~~L~pg~~~~~~~~i~~~~~~~~ 294 (297)
T 2cir_A 243 EKSQGMADFEPKTGYQQMICIEPGHVHDFISLAPGKKWNAYQLLXKEELKYQ 294 (297)
T ss_dssp HHHHHCTTCCSTTGGGGEEEEEEEEEEEEEEECTTCEEEEEEEEECC-----
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCCEEECCCCEEEEEEEEECCCCCEE
T ss_conf 4676111148887647989989455799889899996999999953662027
No 9
>>1yga_A Hypothetical 37.9 kDa protein in BIO3-HXT17 intergenic region; aldose_1_epimerase, sugar metabolism, predicted, structural genomics; 2.00A {Saccharomyces cerevisiae} (A:1-65,A:100-342)
Probab=95.34 E-value=0.2 Score=28.33 Aligned_cols=113 Identities=10% Similarity=0.150 Sum_probs=63.0
Q ss_pred CCCEEEEECC-EEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCC------CCCC-----
Q ss_conf 5872899766-499999769955999995357134478877268854566655310000013478------7754-----
Q gi|254780483|r 67 MSPRVELKNP-SLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTKNAYFAELDYVSTA------NNIE----- 134 (581)
Q Consensus 67 ~~~~I~Iend-~l~i~is~~GG~I~~~~LK~Y~~~~~~ds~~v~Ll~~~~~~~~y~~~~G~~~~~------~~~~----- 134 (581)
.-..|+++|| .++++|-+.||+|.++++.+-..-++-++ ...|..+-++.+.. ...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----------~~~y~~~~~~~~~~~g~~~g~~~~~~~~~ 77 (308)
T 1yga_A 9 KYGVITIGDEKKFQATIAPLGATLVDLKVNGQSVVQGYSN-----------VQDYLTDGNMMGATVGRLNLKQYKASPVE 77 (308)
T ss_dssp TTCCEEEEETTTEEEEEETBTTEEEEEEETTEECBCCCSS-----------GGGGTTCSSCTTCEECSGGGSBCEECCCE
T ss_pred EEEEEEEECCCCEEEEEECCCEEEEEEEECCEEEEECCCC-----------HHHHHCCCCCCCCEECCCCCEEEEEEEEE
T ss_conf 5999999789966999987790999999999588947999-----------89981189816528445772688899964
Q ss_pred CCCC---CCCEECCCCCCCCCCCCCEEEEECCCCEEEEEEEEEC-CCCEEEEEEEECCCCCCCCCC
Q ss_conf 3334---3210015666566666504774158842699999716-883589998631576664222
Q gi|254780483|r 135 LPNS---NTVWNLISGKILTPTTPIKLVFKNANNILFERTISLD-EHYLFKIVDTVTNNSIDQIRF 196 (581)
Q Consensus 135 ~p~~---~~~~~~~~~~~l~~~~~v~l~~~~~~g~~i~kt~t~~-~~Y~i~i~~~v~N~s~~~i~~ 196 (581)
.+.| ...|.+............. -...++-+|++. ++..++++++|+|.++++..+
T Consensus 78 ~~~HGfar~~w~v~~~~s~~~~~~yP------~~f~~~vty~L~~~g~~L~i~~~v~N~g~~~~p~ 137 (308)
T 1yga_A 78 NPSKGVYVVEFKLLDDHTQPNPNEFP------GDLEVTVKYTLNVAEMTLDMEYQAQLVRGDATPI 137 (308)
T ss_dssp EEETTEEEEEEEEEECSSSSSCCCSS------SEEEEEEEEEEETTTTEEEEEEEEEEEESSEEEC
T ss_pred CCCCCEEEEEEEEECCCCCCCCCCCC------EEEEEEEEEEEECCCCCEEEEEEEECCCCCCCEE
T ss_conf 27874599999993046788657821------6899999999922676237899996366877468
No 10
>>3imh_A Galactose-1-epimerase; structural genomics, PSI-2, protein structure initiative; 1.76A {Lactobacillus acidophilus ncfm} (A:1-74,A:108-338)
Probab=95.00 E-value=0.25 Score=27.64 Aligned_cols=108 Identities=17% Similarity=0.195 Sum_probs=63.3
Q ss_pred EEEEECCE-EEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCCCCCCCC--CCCCEECCC
Q ss_conf 28997664-999997699559999953571344788772688545666553100000134787754333--432100156
Q gi|254780483|r 70 RVELKNPS-LIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTKNAYFAELDYVSTANNIELPN--SNTVWNLIS 146 (581)
Q Consensus 70 ~I~Iend~-l~i~is~~GG~I~~~~LK~Y~~~~~~ds~~v~Ll~~~~~~~~y~~~~G~~~~~~~~~~p~--~~~~~~~~~ 146 (581)
.++++||. ++++|-+.||+|.++++-+-.. .| +- ++...|..+.++....-+ .+++ .+..|.+.+
T Consensus 20 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---------~~-~~-~~~~~~~~~~~~~~~~~g-~~~gRi~~~~~~~dG 87 (305)
T 3imh_A 20 EITLENDAGMAVKVLNYGATLEKVLLDGENM---------IL-SL-NSPEDYSKERNFLGGTVG-RIDMHVWDFRPSCDS 87 (305)
T ss_dssp EEEEECSSSEEEEEETBTTEEEEEEETTEEC---------BC-CC-SSGGGGGTSCCCTTCEEC-SBGGSBCEEEEEECS
T ss_pred EEEEECCCCCEEEEECCCCEEEEEEECCCCE---------EE-CC-CCHHHHHHCCCCCCCEEC-CCCCCCEEEEEEECC
T ss_conf 9999979982999977690999999899046---------85-48-998998318783165834-548753257877136
Q ss_pred CCCCCCCCCCEEEEECCC-------CEEEEEEEEECCCCEEEEEEEECCCCCCCCCC
Q ss_conf 665666665047741588-------42699999716883589998631576664222
Q gi|254780483|r 147 GKILTPTTPIKLVFKNAN-------NILFERTISLDEHYLFKIVDTVTNNSIDQIRF 196 (581)
Q Consensus 147 ~~~l~~~~~v~l~~~~~~-------g~~i~kt~t~~~~Y~i~i~~~v~N~s~~~i~~ 196 (581)
. .-.++|++...+ ...++-+|+++++- .++.+++|.++++..+
T Consensus 88 k-----~y~Ltl~l~s~~t~~~yPf~f~l~vtY~L~~~l--~l~i~v~N~g~~~~pf 137 (305)
T 3imh_A 88 E-----HARVDLTLFDPDGNNDYPGNLKLHARYELDNEN--NLHYLLEAVSDKLTIF 137 (305)
T ss_dssp S-----EEEEEEEEEECTTGGGCCSCEEEEEEEEEETTS--EEEEEEEEEESSSEEC
T ss_pred C-----CCEEEEEEECCCCCCCCCCCEEEEEEEEEECCC--EEEEEEEEEECCCCCE
T ss_conf 6-----768999998588777876327899999991598--7999997351444210
No 11
>>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, , isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} (A:355-699)
Probab=94.60 E-value=0.24 Score=27.73 Aligned_cols=130 Identities=8% Similarity=0.033 Sum_probs=65.0
Q ss_pred CCCEEEEECC-EEEEEEECCCCEEEEEEECCCCCCCCCCC--------CC--EEEECCCCC---CCCCEEEEECCC---C
Q ss_conf 5872899766-49999976995599999535713447887--------72--688545666---553100000134---7
Q gi|254780483|r 67 MSPRVELKNP-SLIGSINLKGAQFDDLNLRGYHLDVSSNS--------PI--VTLLSPSNT---KNAYFAELDYVS---T 129 (581)
Q Consensus 67 ~~~~I~Iend-~l~i~is~~GG~I~~~~LK~Y~~~~~~ds--------~~--v~Ll~~~~~---~~~y~~~~G~~~---~ 129 (581)
..+.++++|+ ..+++|...||.|.+++.++=......++ .. .-++.|-.. ...|...-.... .
T Consensus 18 ~~~~~~L~n~~~~~~~v~~~Ga~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~g~il~P~~gRi~~g~~~~~g~~y~l~~~ 97 (345)
T 1z45_A 18 DARFVTIGAGTRFQATFANLGASIVDLKVNGQSVVLGYENEEGYLNPDSAYIGATIGRYANRISKGKFSLCNKDYQLTVN 97 (345)
T ss_dssp TSEEEEESTTSSEEEEEESBTTCEEEEEETTEECBCCCSSHHHHTCTTCCCTTCEECSBCSEEGGGEEEETTEEEECCCC
T ss_pred CEEEEEEECCCCEEEEEEECCCEEEEECCCCCEEEECCCCHHHHCCCCCCEECCCCCCCCCEEECCEEEECCEEEEECCC
T ss_conf 12799994487369999816859999671997888379998997078997418675576686868899999999992789
Q ss_pred CCC--CCCC----CCCCCEECCCCCCCCCCCCCEEEEECC-------CCEEEEEEEEEC-CCCEEEEEEEECCCCCCCCC
Q ss_conf 877--5433----343210015666566666504774158-------842699999716-88358999863157666422
Q gi|254780483|r 130 ANN--IELP----NSNTVWNLISGKILTPTTPIKLVFKNA-------NNILFERTISLD-EHYLFKIVDTVTNNSIDQIR 195 (581)
Q Consensus 130 ~~~--~~~p----~~~~~~~~~~~~~l~~~~~v~l~~~~~-------~g~~i~kt~t~~-~~Y~i~i~~~v~N~s~~~i~ 195 (581)
++. ...+ ..+..|.+...........+++..... -...++.+|++. ++..++++++++|.++++..
T Consensus 98 ~~~~~~~~~~HGf~r~~~w~v~~~~~~~~~~~l~~~l~~~e~~~~~p~~~~~~v~ytl~~~~~~l~~~~~v~N~~~~~~p 177 (345)
T 1z45_A 98 NGVNANHSSIGSFHRKRFLGPIIQNPSKDVFTAEYMLIDNEKDTEFPGDLLVTIQYTVNVAQKSLEIVYKGKLTAGEATP 177 (345)
T ss_dssp BTTBEETTGGGCGGGSBCEEEEEEEEETTEEEEEEEEEECGGGSSSSSEEEEEEEEEEETTTTEEEEEEEEEEEESSEEE
T ss_pred CCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCCEEEEEEEEECCCCCEE
T ss_conf 99987789988888548867777507886699999988898889988078999999996699917999999705775236
Q ss_pred C
Q ss_conf 2
Q gi|254780483|r 196 F 196 (581)
Q Consensus 196 ~ 196 (581)
+
T Consensus 178 ~ 178 (345)
T 1z45_A 178 I 178 (345)
T ss_dssp C
T ss_pred E
T ss_conf 5
No 12
>>3k25_A SLR1438 protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SGR112, P73504_SYNY3; 2.55A {Synechocystis SP} (A:)
Probab=89.54 E-value=1.3 Score=22.50 Aligned_cols=123 Identities=11% Similarity=0.196 Sum_probs=59.7
Q ss_pred CEEEEECCEEE-EEEECCCCEEEEEEECCCCCCC-------CCCCCC---EEEECCCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 72899766499-9997699559999953571344-------788772---688545666553100000134787754333
Q gi|254780483|r 69 PRVELKNPSLI-GSINLKGAQFDDLNLRGYHLDV-------SSNSPI---VTLLSPSNTKNAYFAELDYVSTANNIELPN 137 (581)
Q Consensus 69 ~~I~Iend~l~-i~is~~GG~I~~~~LK~Y~~~~-------~~ds~~---v~Ll~~~~~~~~y~~~~G~~~~~~~~~~p~ 137 (581)
..++++|+.+. +.+...||.|.++...+-..-. ..+.+. ...+.|-..+- ..-++...+.....+.
T Consensus 14 ~~i~l~n~~~~~~~i~~~Ga~i~s~~~~g~~vl~~~~~~~~~~~~~~~~g~~~l~P~~~r~---~~~~~~~~g~~~~l~~ 90 (289)
T 3k25_A 14 YHLEDDQSLARLSLVPGRGGLVTEWTVQGQPILYFDRERFQDPSLSVRGGIPILFPICGNL---PQDQFNHAGKSYRLKQ 90 (289)
T ss_dssp EEEEETTTTEEEEEEGGGTSEEEEEEETTEECBCBCTTGGGSTTSCCCBSBCEEBSCSSCC---GGGEEEETTEEEECCT
T ss_pred EEEECCCCCEEEEECCCCCCEEEEEEECCEEEECCCCHHHCCCCCCCCCCCEEEEEEECCC---CCCEEEECCCCCCCCC
T ss_conf 9999489868999892279799999989999984491786067885268874989871884---7997868983735677
Q ss_pred C----CCCEECCCCCCCCCCCCCEEEEECC--------CCEEEEEEEEECCCCEEEEEEEECCCCCCCCCC
Q ss_conf 4----3210015666566666504774158--------842699999716883589998631576664222
Q gi|254780483|r 138 S----NTVWNLISGKILTPTTPIKLVFKNA--------NNILFERTISLDEHYLFKIVDTVTNNSIDQIRF 196 (581)
Q Consensus 138 ~----~~~~~~~~~~~l~~~~~v~l~~~~~--------~g~~i~kt~t~~~~Y~i~i~~~v~N~s~~~i~~ 196 (581)
| +..|++..... .+...++++.... -...++.+|++.++ .+.+.++++|.|.++..+
T Consensus 91 HG~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~g~p~~~~~~~~y~L~~~-~l~i~~~v~N~g~~~~p~ 159 (289)
T 3k25_A 91 HGFARDLPWEVIGQQT-QDNARLDLRLSHNDATLEAFPFAFELVFSYQLQGH-SLRIEQRIANLGDQRXPF 159 (289)
T ss_dssp TBSGGGSCCEEEEEEC-SSSEEEEEEEECCHHHHTTSCSCEEEEEEEEEETT-EEEEEEEEEECSSSCEEE
T ss_pred CCCCCCCCCCEEEECC-CCCCEEEEEECCCCCHHHCCCCCEEEEEEEEEECC-CCEEEEEEECCCCCCEEE
T ss_conf 7532476631023114-65410467821571034119985399999999089-318999788379976799
No 13
>>1nsx_A Galactose mutarotase; epimerase, galactose metabolism, isomerase; HET: GAL; 1.75A {Lactococcus lactis} (A:)
Probab=88.32 E-value=1.5 Score=21.93 Aligned_cols=120 Identities=17% Similarity=0.102 Sum_probs=59.6
Q ss_pred CEEEEECCE-EEEEEECCCCEEEEEEECCCCCCCCCCCC-----------CEEEECCCC-CCCCCEEEEECCCCCCCCCC
Q ss_conf 728997664-99999769955999995357134478877-----------268854566-65531000001347877543
Q gi|254780483|r 69 PRVELKNPS-LIGSINLKGAQFDDLNLRGYHLDVSSNSP-----------IVTLLSPSN-TKNAYFAELDYVSTANNIEL 135 (581)
Q Consensus 69 ~~I~Iend~-l~i~is~~GG~I~~~~LK~Y~~~~~~ds~-----------~v~Ll~~~~-~~~~y~~~~G~~~~~~~~~~ 135 (581)
+.++|+|+. ++++|+..||.|.++..++-+.-+..+.+ ++..--+.. ....|. ..+....+
T Consensus 13 ~~~~L~n~~~~~~~i~~~Ga~i~s~~~~~~~~~l~~~~~~~~~~~~~~~g~il~p~~gRi~~g~~~------~~G~~~~l 86 (347)
T 1nsx_A 13 DLISLTNKAGVTISFTNLGARIVDWQKDGKHLILGFDSAKEYLEKDAYPGATVGPTAGRIKDGLVK------ISGKDYIL 86 (347)
T ss_dssp EEEEEECTTSCEEEEETBTTEEEEEEETTEESBCCCSSHHHHHHTCSCTTCEECSBCSEEGGGEEE------ETTEEEEC
T ss_pred EEEEEECCCCCEEEEECCCEEEEEECCCCCEEEECCCCHHHHHHCCCCCCCEECCCCCCCCCCEEE------ECCEEEEE
T ss_conf 699999599839999798869997036997589669998998317885275714516711388040------89989991
Q ss_pred C-----------CCCCCEECCCCCCCCCCCC--CEEEEECC-------CCEEEEEEEEECCCCEEEEEEEECCCCCCCCC
Q ss_conf 3-----------3432100156665666665--04774158-------84269999971688358999863157666422
Q gi|254780483|r 136 P-----------NSNTVWNLISGKILTPTTP--IKLVFKNA-------NNILFERTISLDEHYLFKIVDTVTNNSIDQIR 195 (581)
Q Consensus 136 p-----------~~~~~~~~~~~~~l~~~~~--v~l~~~~~-------~g~~i~kt~t~~~~Y~i~i~~~v~N~s~~~i~ 195 (581)
+ .+...|++.......++.. ++|..... ....++-+|++.++- .+..+++|.++++..
T Consensus 87 ~~n~~~~~~HG~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~ty~L~~~l--~~~~~~~n~~~~~~p 164 (347)
T 1nsx_A 87 NQNEGPQTLHGGEESIHTKLWTYEVTDLGAEVQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDN--KWKIHYEAISDKDTV 164 (347)
T ss_dssp CCCBTTBEETTSTTCGGGSBCEEEEEECSSEEEEEEEEEECTTGGGCCSCEEEEEEEEEETTS--EEEEEEEEEESSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCCCCCCEEEEEEEEEEECCCC--EEEEEEEEECCCCEE
T ss_conf 478898755788655576002467652788438999999689878875789999999964598--489999974377547
Q ss_pred C
Q ss_conf 2
Q gi|254780483|r 196 F 196 (581)
Q Consensus 196 ~ 196 (581)
+
T Consensus 165 ~ 165 (347)
T 1nsx_A 165 F 165 (347)
T ss_dssp C
T ss_pred E
T ss_conf 6
No 14
>>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} (A:517-951)
Probab=69.49 E-value=6.1 Score=17.55 Aligned_cols=30 Identities=7% Similarity=-0.037 Sum_probs=25.5
Q ss_pred CCEEEEECCEEEEEEECCCCEEEEEEECCC
Q ss_conf 872899766499999769955999995357
Q gi|254780483|r 68 SPRVELKNPSLIGSINLKGAQFDDLNLRGY 97 (581)
Q Consensus 68 ~~~I~Iend~l~i~is~~GG~I~~~~LK~Y 97 (581)
.....++|+.++++++..+|.+.++.-|.-
T Consensus 157 ~~~~~l~n~~~~l~~~~~~G~~~s~~~~~~ 186 (435)
T 3bvx_A 157 PREISLRVGNGPTLAFSEQGLLKSIQLTQD 186 (435)
T ss_dssp CCCEEEECTTSCEEEECTTSCEEEEECSTT
T ss_pred CCCEEEEECCEEEEEECCCCCEEEEEECCC
T ss_conf 751478606647999757782689995477
No 15
>>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} (D:1-107)
Probab=67.22 E-value=2.7 Score=20.15 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 87788899999731451156789999999850
Q gi|254780483|r 390 KNIQPKIDELREKFKQSPPQVLQKAMIQLYKT 421 (581)
Q Consensus 390 ~~lqP~i~~i~ekyk~d~~~~~~~e~m~ly~~ 421 (581)
+.+.||+++|+||-|+|=.+--.+|-.+||+-
T Consensus 31 ~~~~~eq~aLreKekg~Wk~LS~eEKkAlYri 62 (107)
T 1v54_D 31 KNLSASQKALKEKEKASWSSLSIDEKVELYRL 62 (107)
T ss_dssp CCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCHHHCCHHHHHHHHHH
T ss_conf 12899999999985099666699999999999
No 16
>>1o7d_D Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} (D:)
Probab=61.32 E-value=8.5 Score=16.48 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=24.4
Q ss_pred EEEEECCEEEEEEECCCCEEEEEEECC
Q ss_conf 289976649999976995599999535
Q gi|254780483|r 70 RVELKNPSLIGSINLKGAQFDDLNLRG 96 (581)
Q Consensus 70 ~I~Iend~l~i~is~~GG~I~~~~LK~ 96 (581)
.|+|+|+.++++||...|.+.++..|+
T Consensus 2 ~i~i~N~~~~l~fd~~tG~L~sit~~~ 28 (282)
T 1o7d_D 2 DLVIQNEYLRARFDPNTGLLMELENLE 28 (282)
T ss_dssp CCEEECSSEEEEECTTTCSEEEEEEC-
T ss_pred CEEEECCEEEEEEECCCCCEEEEEECC
T ss_conf 089967879999959988389999877
No 17
>>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A* (A:541-825)
Probab=58.55 E-value=9.4 Score=16.15 Aligned_cols=94 Identities=7% Similarity=0.088 Sum_probs=43.6
Q ss_pred CEEEEEEEEEC-CCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 42699999716-88358999863157666422242101202568654442001100000156543210013333333222
Q gi|254780483|r 165 NILFERTISLD-EHYLFKIVDTVTNNSIDQIRFSPRGRIMRHKPQTATNTFGVQEGFIAVLGDKSLVEQKYSDIEKSSIS 243 (581)
Q Consensus 165 g~~i~kt~t~~-~~Y~i~i~~~v~N~s~~~i~~~~~~~i~r~~~~~~~~~~~~~~g~~~~~~d~~~~~~~~~d~~~~~~~ 243 (581)
...++.++++. ++=.|+++.+|.|+..... ++. ............+.. +.++..........+. +.. .
T Consensus 127 ~~~i~~~i~L~~~~~~I~~~~~vd~~~~~~~-lrv---~fp~~i~~~~~~~~~---~fG~i~R~~~~~~~~~---e~~-~ 195 (285)
T 2wyh_A 127 ELTLTTLIRMEKNNPRLQFTTRFDNQMTNHR-LRV---LFPTHLKTDHHLADS---IFETVKRPNHPDATFW---KNP-S 195 (285)
T ss_dssp EEEEEEEEEEETTCSCEEEEEEEEECCCSEE-EEE---EEECCCCCSEEEEEE---TTEEEEEESSCCTTTC---CCS-C
T ss_pred EEEEEEEEEEECCCCEEEEEEEEECCCCCEE-EEE---CCCCCCCCCCEEEEC---CCEEEECCCCCCCCCC---CCC-C
T ss_conf 3799999999799984799999843667589-997---055653457579726---8618988898887765---267-7
Q ss_pred CCCCCCCEEEEEECEEEEEEEECCCC
Q ss_conf 33234635787311058999607898
Q gi|254780483|r 244 NFHESNSWLGISDKYWASVFIPSKET 269 (581)
Q Consensus 244 ~~~~~~~Wva~~qkYF~salIP~~~~ 269 (581)
...-.-+||++.+.=...+++.+...
T Consensus 196 ~~~p~~~wv~~~d~~~g~ai~~~g~~ 221 (285)
T 2wyh_A 196 NPQHQECFVSLFDGENGVTIGNYGLN 221 (285)
T ss_dssp CCEECSSEEEEECSSEEEEEEESSCC
T ss_pred CCEEEEEEEEEECCCCEEEEEECCCC
T ss_conf 74665669999879916999978976
No 18
>>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II (PSI-II), glycosyl hydrolase family 2, jelly-roll fold; 2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB: 3dec_A (A:729-1010)
Probab=46.44 E-value=14 Score=14.82 Aligned_cols=111 Identities=15% Similarity=0.128 Sum_probs=52.6
Q ss_pred EEECCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCEEEE---ECCCCCCCCCCCCCCCCEECCCCC
Q ss_conf 99766499999769955999995357134478877268854566655310000---013478775433343210015666
Q gi|254780483|r 72 ELKNPSLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTKNAYFAEL---DYVSTANNIELPNSNTVWNLISGK 148 (581)
Q Consensus 72 ~Iend~l~i~is~~GG~I~~~~LK~Y~~~~~~ds~~v~Ll~~~~~~~~y~~~~---G~~~~~~~~~~p~~~~~~~~~~~~ 148 (581)
+|+++.++++||..-|.|.++..++-.- +. ..+...+. ..-+.|..-... -|...+-+ .+ ...+....
T Consensus 2 tI~g~~f~~~Fdk~tG~l~s~~~~g~~l-l~-~gp~~~~w-RAptDND~~~~~~~~~W~~agl~-~~-----~~~~~~~~ 72 (282)
T 3bga_A 2 PQKAGETAFVVDKNTGALSSLTLDGKEL-LA-APITLSLF-RPATDNDNRDRNGARLWRKAGLN-NL-----TQKVVSLK 72 (282)
T ss_dssp CCCCSCEEEEECTTTCSEEEEEETTEEC-CS-EEEEEECC-CCCCTTTTTCTTSHHHHHHTTTT-SC-----EEEEEEEE
T ss_pred EEECCCEEEEEECCCCEEEEEEECCEEH-HC-CCCCCCCC-CCCCCCCCCCCCHHHHHHHCCCC-CC-----EEEEEEEE
T ss_conf 6406976999967877499999899952-12-78530331-46546664566436789875836-00-----43568999
Q ss_pred CCCCCCCCEEEEEC--C-CCEEEEEEEEECCCCEEEEEEEECCCCC
Q ss_conf 56666650477415--8-8426999997168835899986315766
Q gi|254780483|r 149 ILTPTTPIKLVFKN--A-NNILFERTISLDEHYLFKIVDTVTNNSI 191 (581)
Q Consensus 149 ~l~~~~~v~l~~~~--~-~g~~i~kt~t~~~~Y~i~i~~~v~N~s~ 191 (581)
....+..++..+.. . .+...+.+|++..+-.|.++.++.-.+.
T Consensus 73 ~~~~~~~v~i~~~~~~~~~~~~~~~~Y~i~~~G~i~v~~~~~~~~~ 118 (282)
T 3bga_A 73 EEKTSATVRAEILNGKGQKVGXADFVYALDKNGALKVRTTFQPDTA 118 (282)
T ss_dssp ECSSEEEEEEEEECTTSCEEEEEEEEEEECTTSCEEEEEEEEECTT
T ss_pred EECCCEEEEEEEECCCCCEEEEEEEEEEECCCCEEEEEEEEEECCC
T ss_conf 9669589999998678861699999999918928999999996887
No 19
>>1jz7_A Lactase, beta-galactosidase, LACZ; TIM barrel (alpha/beta barrel), jelly-roll barrel, immunoglobulin, beta supersandwich, hydrolase; HET: GAL; 1.50A {Escherichia coli} (A:733-1023)
Probab=45.97 E-value=15 Score=14.78 Aligned_cols=33 Identities=3% Similarity=-0.087 Sum_probs=28.0
Q ss_pred CCCCCCEEEEECCEEEEEEECCCCEEEEEEECC
Q ss_conf 014587289976649999976995599999535
Q gi|254780483|r 64 ALSMSPRVELKNPSLIGSINLKGAQFDDLNLRG 96 (581)
Q Consensus 64 ~~~~~~~I~Iend~l~i~is~~GG~I~~~~LK~ 96 (581)
.......++|+.+.++++||.+-|.|.++...+
T Consensus 8 v~e~~~~i~i~~~~~~~~Fdk~tG~l~s~~~~g 40 (291)
T 1jz7_A 8 LTTSEMDFCIELGNKRWQFNRQSGFLSQMWIGD 40 (291)
T ss_dssp EEECSSEEEEEETTEEEEEETTTCSEEEEEETT
T ss_pred EEECCCEEEEEECCEEEEEECCCCCEEEEEECC
T ss_conf 144265379997989999876778368999887
No 20
>>3h9p_A Putative triphosphoribosyl-dephospho-COA synthase; structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.30A {Archaeoglobus fulgidus dsm 4304} (A:154-249)
Probab=41.97 E-value=17 Score=14.35 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=21.4
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998504878678899999999999999
Q gi|254780483|r 412 QKAMIQLYKTHNINPLAGCWPILLQIPVFFAI 443 (581)
Q Consensus 412 ~~e~m~ly~~~~vnP~~GClP~l~q~p~~~a~ 443 (581)
=.+.=+.++++++|| |||-.+|. .-+|+++
T Consensus 62 l~~ld~~~~~~~isP-GgsADLla-~tlfl~~ 91 (96)
T 3h9p_A 62 RKELDEKLLKDGANP-GTIADLTA-SSIFLAL 91 (96)
T ss_dssp HHHHHHHHHHHTCCC-HHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHCCCCC-CHHHHHHH-HHHHHHH
T ss_conf 999999999889896-47999999-9999999
No 21
>>2akh_Y Preprotein translocase SECY subunit; protein transport, translocation, transmembrane, transport; 14.90A {Escherichia coli} PDB: 2aki_Y (Y:41-400)
Probab=39.20 E-value=18 Score=14.06 Aligned_cols=53 Identities=15% Similarity=0.095 Sum_probs=25.8
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-CCCCCHHHH
Q ss_conf 504878678899999999999999999987698628875341000-033572566
Q gi|254780483|r 420 KTHNINPLAGCWPILLQIPVFFAIYKVISISLEMRHAPFWGWIKD-LAAADPTNI 473 (581)
Q Consensus 420 ~~~~vnP~~GClP~l~q~p~~~a~~~~~~~~ielr~~~f~~Wi~d-ls~~d~~~~ 473 (581)
=-=|+|| +|++|+.++.=++.-.....+-.-......+.-|+.+ +|.++|.+.
T Consensus 189 iPiKln~-agvmPiIfassll~~p~~i~~~l~~~~~~~~~~~i~~~~s~~~~~~~ 242 (360)
T 2akh_Y 189 LPLKVNM-AGVIPAIFASSIILFPATIASWFGGGTGWNWLTTISLYLQPGQPLYV 242 (360)
T ss_pred CCEEHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHH
T ss_conf 4001278-88889999999999999999873224317899999987089982999
No 22
>>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} (A:384-452)
Probab=39.11 E-value=18 Score=14.05 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=24.9
Q ss_pred CCEEEEECCEEEEEEEC-CCCEEEEEEECC
Q ss_conf 87289976649999976-995599999535
Q gi|254780483|r 68 SPRVELKNPSLIGSINL-KGAQFDDLNLRG 96 (581)
Q Consensus 68 ~~~I~Iend~l~i~is~-~GG~I~~~~LK~ 96 (581)
.+.|-++|+.+.+.|.+ .||+|.++..|.
T Consensus 15 ~~Ei~l~~~~~~~~~~p~~gGsl~Eld~k~ 44 (69)
T 1k1x_A 15 RAEIMVENDGFIATIKPHYGGSIFELSSKR 44 (69)
T ss_dssp SCEEEEECSSEEEEEETTTTTEEEEEEETT
T ss_pred CEEEEEECCCEEEEEECCCCCEEEEECCCC
T ss_conf 868999769668999138984799960565
No 23
>>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex, exonuclease, hydrolase, mRNA processing, nuclease, nucleus, rRNA processing, transcription; 2.20A {Schizosaccharomyces pombe} (A:301-651,A:856-899)
Probab=37.22 E-value=11 Score=15.53 Aligned_cols=40 Identities=10% Similarity=0.413 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q ss_conf 99999999887632016399999999999988899999999999---88877888
Q gi|254780483|r 344 KPMFMLMSYFYNLVGNFGIAIMLTTVFVKLLFFPLAKKQYVSTA---NMKNIQPK 395 (581)
Q Consensus 344 kplf~~L~~l~~~i~NyGiaIIllTilikli~~PLt~ks~~Sm~---kM~~lqP~ 395 (581)
+.|.|+|.+-|.-|++|+| +||--|.=+.|-. --|+|.|+
T Consensus 322 eGL~WVL~YYy~GcpSW~W------------yYPYHYAPfaS~~~~~~~~~~~~~ 364 (395)
T 3fqd_A 322 HGLCWVLLYYYQGCPSWTW------------YYPYHYAPFAARGVKXPNRVLTPE 364 (395)
T ss_dssp HHHHHHHHHHHTCCSCSSC------------CCCCSSCCCGGTTCCCCCCCCCHH
T ss_pred HHHEEHHHHHCCCCCCCCC------------CCCCCCCCHHHCCCCCCCCCCCHH
T ss_conf 7760076875899788740------------068888962999998998878988
No 24
>>3ezq_A Tumor necrosis factor receptor superfamily member 6; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1ddf_A (A:1-62)
Probab=31.26 E-value=24 Score=13.18 Aligned_cols=35 Identities=14% Similarity=0.188 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 998887788899999731451156789999999850
Q gi|254780483|r 386 TANMKNIQPKIDELREKFKQSPPQVLQKAMIQLYKT 421 (581)
Q Consensus 386 m~kM~~lqP~i~~i~ekyk~d~~~~~~~e~m~ly~~ 421 (581)
+.++..-.++|++|+++|.+|. +.+--+|...+++
T Consensus 27 aR~Lglse~~Id~I~~~~~~d~-~eq~~~mL~~W~~ 61 (62)
T 3ezq_A 27 VRKNGVNEAKIDEIKNDNVQDT-AEQKVQLLRNWHQ 61 (62)
T ss_dssp HHHTTCCHHHHHHHHHHCSSCH-HHHHHHHHHHHHT
T ss_pred HHHCCCCHHHHHHHHHHCCCCH-HHHHHHHHHHHHH
T ss_conf 9993989999999998788988-9999999999998
No 25
>>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A (A:)
Probab=28.91 E-value=26 Score=12.91 Aligned_cols=36 Identities=14% Similarity=0.284 Sum_probs=26.7
Q ss_pred HHHHHHHHCCCCHHH-HHHHHHHHHHHHCCCCHHHHH
Q ss_conf 899999731451156-789999999850487867889
Q gi|254780483|r 395 KIDELREKFKQSPPQ-VLQKAMIQLYKTHNINPLAGC 430 (581)
Q Consensus 395 ~i~~i~ekyk~d~~~-~~~~e~m~ly~~~~vnP~~GC 430 (581)
=++++|+++.++|.. ..=-+.|..|+..++++-+-|
T Consensus 16 yl~kVK~~f~~~p~~Y~~FL~il~~~~~~~i~~~~v~ 52 (80)
T 2cr7_A 16 YLDQVKIRFGSDPATYNGFLEIMKEFKSQSIDTPGVI 52 (80)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 9999999981698999999999999987689899999
No 26
>>1z65_A PRPLP, prion-like protein doppel, doppelganger; transmembrane helix, DHPC, mouse doppel, unknown function; NMR {Synthetic} (A:)
Probab=27.64 E-value=27 Score=12.76 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 32016399999999
Q gi|254780483|r 356 LVGNFGIAIMLTTV 369 (581)
Q Consensus 356 ~i~NyGiaIIllTi 369 (581)
-+|-||++|..+-+
T Consensus 4 r~gtw~~~ilcmll 17 (30)
T 1z65_A 4 RLGTWWVAILCMLL 17 (30)
T ss_dssp SCSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
T ss_conf 11008999999999
No 27
>>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} (A:453-659)
Probab=25.90 E-value=29 Score=12.54 Aligned_cols=44 Identities=20% Similarity=0.094 Sum_probs=27.2
Q ss_pred CCCCEEEEEC------CCCEEEEEEEEECCCCEEEEEEEECCCCCCCCCCC
Q ss_conf 6650477415------88426999997168835899986315766642224
Q gi|254780483|r 153 TTPIKLVFKN------ANNILFERTISLDEHYLFKIVDTVTNNSIDQIRFS 197 (581)
Q Consensus 153 ~~~v~l~~~~------~~g~~i~kt~t~~~~Y~i~i~~~v~N~s~~~i~~~ 197 (581)
...++|.... ...+.++|+|++.++ .+.+++.++|.+.....+.
T Consensus 72 ~~~v~l~r~G~v~~~~~~p~~i~K~y~l~~~-~~~V~y~~~~~~~~~~~f~ 121 (207)
T 1k1x_A 72 ENGVKLWREGGVYAEEKIPARVEKKIELTED-GFIAKYRVLLEKPYKALFG 121 (207)
T ss_dssp TTEEEEEEEEEEESSSEEEEEEEEEEEEETT-EEEEEEEEEESSCCCEEEE
T ss_pred CCCEEEEEECCCCCCCCCCEEEEEEEEECCC-CEEEEEEEEECCCCCEEEE
T ss_conf 5716999967613467565489999997189-5089999950798520146
No 28
>>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural genomics, NPPSFA; 2.20A {Pyrococcus horikoshii OT3} (A:15-99)
Probab=24.55 E-value=31 Score=12.37 Aligned_cols=31 Identities=16% Similarity=0.386 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHHH--HHHHHH
Q ss_conf 9888778889999973145115678--999999
Q gi|254780483|r 387 ANMKNIQPKIDELREKFKQSPPQVL--QKAMIQ 417 (581)
Q Consensus 387 ~kM~~lqP~i~~i~ekyk~d~~~~~--~~e~m~ 417 (581)
.++=..+-+|++++++-.+||++.+ +|||.+
T Consensus 28 e~vm~~ReeiK~mRa~~~gdP~kaLeeSQe~LA 60 (85)
T 2om6_A 28 NAVIEVRNEIKKXRAQASEDPRKVLTGSQEALA 60 (85)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 999999899999997600028899998888778
No 29
>>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori} (A:)
Probab=23.95 E-value=32 Score=12.29 Aligned_cols=12 Identities=8% Similarity=0.373 Sum_probs=3.8
Q ss_pred HHHHHHHHHHHH
Q ss_conf 887788899999
Q gi|254780483|r 389 MKNIQPKIDELR 400 (581)
Q Consensus 389 M~~lqP~i~~i~ 400 (581)
++++|-+|+++|
T Consensus 12 aq~~q~~~~~~q 23 (99)
T 3f42_A 12 LDGXKKEFSQLE 23 (99)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999999
No 30
>>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, copper, zinc, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus str} (A:151-230)
Probab=23.79 E-value=32 Score=12.27 Aligned_cols=46 Identities=9% Similarity=0.268 Sum_probs=27.3
Q ss_pred HCC-HHHHHHHHHHHHHHHHH--HHHHHH-------------------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 011-03568999999998876--320163-------------------99999999999988899999
Q gi|254780483|r 336 WGW-FYFIAKPMFMLMSYFYN--LVGNFG-------------------IAIMLTTVFVKLLFFPLAKK 381 (581)
Q Consensus 336 ~Gw-f~~i~kplf~~L~~l~~--~i~NyG-------------------iaIIllTilikli~~PLt~k 381 (581)
++| +-|.+-.++|++-|+-. |++-++ ++..+.|+++=+..+-.|..
T Consensus 7 ~~Wh~~W~~~g~~Wi~~W~~rp~fipR~~~v~ag~~~eLit~~Dkkvg~~~l~~ti~iV~~g~~~T~~ 74 (80)
T 1yew_A 7 YFWHAFWFAIGVAWIGYWSRRPIFIPRLLMVDAGRADELVSATDRKVAMGFLAATILIVVMAMSSANS 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHSSCSCTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHCC
T ss_conf 63035999999998778775465311367776488121168422252347899999998877754223
No 31
>>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} (A:1-275)
Probab=23.01 E-value=33 Score=12.17 Aligned_cols=43 Identities=12% Similarity=-0.074 Sum_probs=31.6
Q ss_pred ECCCCEEEEEEEEECCCCE-EEEEEEECCCCCCCCCCCCCEEEE
Q ss_conf 1588426999997168835-899986315766642224210120
Q gi|254780483|r 161 KNANNILFERTISLDEHYL-FKIVDTVTNNSIDQIRFSPRGRIM 203 (581)
Q Consensus 161 ~~~~g~~i~kt~t~~~~Y~-i~i~~~v~N~s~~~i~~~~~~~i~ 203 (581)
....|+.+++++..+.+-- .-.+++|+|.++.++++..|.-..
T Consensus 95 ~~~~gi~~~~~~~v~~~~~v~i~rv~i~N~~~r~l~l~~y~e~~ 138 (275)
T 1ulv_A 95 DNAGRWRLTKTYVTDPRRSTVMLGVTFEVLDGGDYQLFVLSDPS 138 (275)
T ss_dssp CTTSSEEEEEEEEECTTSSEEEEEEEEEECSSCCCEEEEEEEEC
T ss_pred CCCCCEEEEEEEECCCCCCEEEEEEEEEECCCCCCEEEEEECCC
T ss_conf 48985699999976898677999999994699951289996375
No 32
>>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} (B:1-52,B:271-319)
Probab=22.16 E-value=34 Score=12.05 Aligned_cols=30 Identities=27% Similarity=0.534 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHC
Q ss_conf 7788899999731---4511567899999998504
Q gi|254780483|r 391 NIQPKIDELREKF---KQSPPQVLQKAMIQLYKTH 422 (581)
Q Consensus 391 ~lqP~i~~i~eky---k~d~~~~~~~e~m~ly~~~ 422 (581)
.|.|-++||.+.| ++|+ ..+.|...|.|.+
T Consensus 19 ~L~~aL~ELe~ay~~~~~Dp--~F~~El~~ll~~Y 51 (101)
T 1qop_B 19 ILMPALNQLEEAFVSAQKDP--EFQAQFADLLKNY 51 (101)
T ss_dssp GGHHHHHHHHHHHHHHHTCH--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHC
T ss_conf 88999999999999997298--9999999998624
No 33
>>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus HB8} (A:1-75,A:286-344)
Probab=21.14 E-value=36 Score=11.91 Aligned_cols=33 Identities=15% Similarity=0.425 Sum_probs=15.5
Q ss_pred HHHHHHHHHH---HCCCCHHHHHHHHHHHHHHHC-CCCH
Q ss_conf 7888999997---314511567899999998504-8786
Q gi|254780483|r 392 IQPKIDELRE---KFKQSPPQVLQKAMIQLYKTH-NINP 426 (581)
Q Consensus 392 lqP~i~~i~e---kyk~d~~~~~~~e~m~ly~~~-~vnP 426 (581)
|.|-++||.+ |+++|+ ..++|...|+|.+ ||.+
T Consensus 42 L~~aL~ELe~ay~~~~~Dp--~F~~El~~ll~~YvG~~t 78 (134)
T 1x1q_A 42 LIPALEELEAAYREAKKDP--AFLEELDHYLRQFAGLST 78 (134)
T ss_dssp THHHHHHHHHHHHHHHHCH--HHHHHHHHHHHHTTCSSS
T ss_pred HHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHCCCCCC
T ss_conf 9999999999999996699--999999999874489776
No 34
>>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 1mo7_A 1mo8_A* 1q3i_A (A:87-170,A:269-338)
Probab=20.49 E-value=37 Score=11.81 Aligned_cols=64 Identities=8% Similarity=0.122 Sum_probs=38.7
Q ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC---CCCHHHHHHHHHHHHHHH
Q ss_conf 2016--39999999999998889999999999988877-88899999731---451156789999999850
Q gi|254780483|r 357 VGNF--GIAIMLTTVFVKLLFFPLAKKQYVSTANMKNI-QPKIDELREKF---KQSPPQVLQKAMIQLYKT 421 (581)
Q Consensus 357 i~Ny--GiaIIllTilikli~~PLt~ks~~Sm~kM~~l-qP~i~~i~eky---k~d~~~~~~~e~m~ly~~ 421 (581)
.+|| |++|+++-++.=.+=+-=.+|+-+++++.+.+ +=++.+|.+-- ++.+ -.+|+++-++=|.
T Consensus 46 ~~~~~~~i~I~~iv~in~~i~f~qE~ka~k~~~aL~~~~~T~lgkI~~lv~~~~~~~-t~l~~~idr~~~~ 115 (154)
T 2zxe_A 46 NDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSFKNMVRTVMGRIATLASGLEVGR-TPIAIEIEHFIHI 115 (154)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHTTSGSHHHHHHHHHHHSCCCC-CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
T ss_conf 201878889789999999999999999999999975459330216666212011233-4899999999999
Done!