RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780483|ref|YP_003064896.1| putative inner membrane
protein translocase component YidC [Candidatus Liberibacter asiaticus
str. psy62]
(581 letters)
>gnl|CDD|179279 PRK01318, PRK01318, membrane protein insertase; Provisional.
Length = 521
Score = 544 bits (1404), Expect = e-155
Identities = 196/565 (34%), Positives = 300/565 (53%), Gaps = 63/565 (11%)
Query: 6 NYFVAIALSVIIVYAWQNFYVYPRIEEMNNERKNIQTVKQPNQVDNSYAAVLIDDRAQAL 65
+AIALS +I WQ + ++ Q
Sbjct: 5 RLLLAIALSFVIFLGWQYWQQ---------DKAQAAAQAPAPQA---------------- 39
Query: 66 SMSPRVELKNPSLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTKNAYFAELD 125
R+ ++ L SI+ KG + DDL L+ Y + S SP V LLSP +T++ YFA+
Sbjct: 40 ----RITVETDVLRLSIDTKGGRIDDLLLKKYKETLDS-SPPVVLLSP-STEHPYFAQSG 93
Query: 126 YVSTANNIELPNS-NTVWNLISGKIL----TPTTPIKLVFKNANNILFERTISLDEH-YL 179
+PN T++ ++ P+ L + N N + F +T +LD Y+
Sbjct: 94 LTGADGPDNVPNPDRTLYTADGDSLVLADGQNELPVTLTWTNGNGLTFTKTYTLDRGDYM 153
Query: 180 FKIVDTVTNNSIDQIRFSPRGRIMRHKPQTATNTFGVQEGFIAVLGDKSLVEQKYSDIEK 239
F + +V NNS + SP G++ R + ++ G I +K + Y DI+
Sbjct: 154 FTVEYSVNNNSGAPVNLSPYGQLKRTGS-SNFASYTFHGGAIGTPDEK-YEKYTYKDIDD 211
Query: 240 SSISNFHESNSWLGISDKYWASVFIPSKETSFHSQFKYLSDGHARYQAKFSANEITILPG 299
+ N W+ I DKY+A+ IP + F + G+ YQ F + +T+ PG
Sbjct: 212 NL--NISSKGGWVAILDKYFATALIPQNGQN---NFYSKNLGNGLYQVGFKSPPVTVAPG 266
Query: 300 KSITTTNFLFAGAKEFPTIHHYEKDLAIPRFEMLIDWGWFYFIAKPMFMLMSYFYNLVGN 359
+S +TT L+AG KE + P ++ +D+GW +FI KP+F L+ + ++ VGN
Sbjct: 267 QSASTTARLYAGPKEVKLL----AKEIAPGLDLAVDYGWLWFITKPLFWLLDFLHSFVGN 322
Query: 360 FGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQSPPQVLQKAMIQLY 419
+G AI+L T+ VKLL FPL K YVS A MK +QPK+ EL+EK+K PQ +Q+ M++LY
Sbjct: 323 WGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYK-DDPQKMQQEMMELY 381
Query: 420 KTHNINPLAGCWPILLQIPVFFAIYKVISISLEMRHAPFWGWIKDLAAADPTNIFTLFGI 479
K +NPL GC PIL+QIP+FFA+YKV+ +S+E+RHAPF GWI DL+A DP I
Sbjct: 382 KKEKVNPLGGCLPILIQIPIFFALYKVLLVSIELRHAPFIGWIHDLSAPDPYFIL----- 436
Query: 480 LPFYLPGFMHVGIWPIIMSLSMFIQMKMSPPPADKGQAMILNWMPVVFVFALSSFPAGLI 539
H+G+ PI+M ++MF+Q K++P P D QA I+ +MP++F F SFPAGL+
Sbjct: 437 ---------HIGLLPILMGITMFLQQKLNPTPTDPMQAKIMKFMPLIFTFFFLSFPAGLV 487
Query: 540 IYWSWSNVISIVQQAVIMKMHGAEI 564
+YW +N+++I+QQ +I + +
Sbjct: 488 LYWIVNNLLTIIQQYLINRRLEKKK 512
>gnl|CDD|163342 TIGR03593, yidC_nterm, membrane protein insertase, YidC/Oxa1
family, N-terminal domain. Essentially all bacteria
have a member of the YidC family, whose C-terminal
domain is modeled by TIGR03592. The two copies are found
in endospore-forming bacteria such as Bacillus subtilis
appear redundant during vegetative growth, although the
member designated spoIIIJ (stage III sporulation protein
J) has a distinct role in spore formation. YidC, its
mitochondrial homolog Oxa1, and its chloroplast homolog
direct insertion into the bacterial/organellar inner (or
only) membrane. This model describes an N-terminal
sequence region, including a large periplasmic domain
lacking in YidC members from Gram-positive species. The
multifunctional YidC protein acts both with and
independently of the Sec system.
Length = 366
Score = 245 bits (627), Expect = 3e-65
Identities = 102/370 (27%), Positives = 164/370 (44%), Gaps = 23/370 (6%)
Query: 6 NYFVAIALSVIIVYAWQNFYVYPRIEEMNNERKNIQTVKQPNQVDNSYAAVLI------- 58
+AIALS +I WQ + P Q + AA
Sbjct: 3 RLILAIALSFVIFLLWQAWQSDPGPPPPKPPAAAQTASAQSATAAATPAAAPPAADAPAA 62
Query: 59 -DDRAQALSMSPRVELKNPSLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTK 117
A + + R+ +K L SI+ KG D L L+ Y + +SP V LLS +
Sbjct: 63 AAAADAAAATAKRITVKTDVLRASISTKGGDIDSLELKKYKETLDKDSPPVLLLS-DGAE 121
Query: 118 NAYFAELDYV-STANNIELPNSNTVWNLISGKI-LTP-TTPIKLVFKNANNILFERTISL 174
Y A+ + + ++ LP TVW G+ LTP P+ L + N+N + +T +
Sbjct: 122 RLYVAQSGLIGANGADLALPGHRTVWQAEGGEYTLTPGQLPVTLTWDNSNGVTVTKTYTF 181
Query: 175 DEH-YLFKIVDTVTNNSIDQIRFSPRGRIMRHKPQTATNTFGVQEGFIAVL---GDKSLV 230
D YL + VTNN + S G++ R T +T+ + E F +
Sbjct: 182 DRDSYLIDVEYKVTNNGDAPVSLSLYGQLKRDLSPTEKSTYFLHETFTGAAYYTDGEKYQ 241
Query: 231 EQKYSDIEKSSISNFHES-NSWLGISDKYWASVFIPSKETSFHSQFKYLSD-GHARYQAK 288
+ + DIEK ++ + W+G+ Y+AS +IP + + F Y G+ Y A
Sbjct: 242 KVSFKDIEKKKLNVETKGGAGWVGMLQHYFASAWIPPAGSDGTTAFYYGRKLGNNVYIAG 301
Query: 289 FSANEITILPGKSITTTNFLFAGAKEFPTIHHYEKDLAIPRFEMLIDWGWFYFIAKPMFM 348
F + +T+ PG+S T + L+AG KE + P ++ +D+GW +FIAKP+F
Sbjct: 302 FVSPVVTVAPGQSATIKSRLYAGPKEQDVLKAIA-----PGLDLAVDYGWLWFIAKPLFW 356
Query: 349 LMSYFYNLVG 358
L+ +F++LVG
Sbjct: 357 LLDFFHSLVG 366
>gnl|CDD|163341 TIGR03592, yidC_oxa1_cterm, membrane protein insertase, YidC/Oxa1
family, C-terminal domain. This model describes
full-length from some species, and the C-terminal region
only from other species, of the YidC/Oxa1 family of
proteins. This domain appears to be univeral among
bacteria (although absent from Archaea). The
well-characterized YidC protein from Escherichia coli
and its close homologs contain a large N-terminal
periplasmic domain in addition to the region modeled
here.
Length = 181
Score = 234 bits (600), Expect = 4e-62
Identities = 91/202 (45%), Positives = 132/202 (65%), Gaps = 23/202 (11%)
Query: 359 NFGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQSPPQVLQKAMIQL 418
N+G+AI+L T+ V+LL PL KQY S M+ +QPK+ E++EK+K P Q LQ+ M++L
Sbjct: 1 NWGLAIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDP-QKLQQEMMKL 59
Query: 419 YKTHNINPLAGCWPILLQIPVFFAIYKVISISLEMRHAPFWGWIKDLAAADPTNIFTLFG 478
YK +NPL GC P+L+Q+P+F A+Y+V+ S+E+RHAPF WIKDL+A DP
Sbjct: 60 YKEEGVNPLGGCLPLLIQMPIFIALYQVLRRSIELRHAPFL-WIKDLSAPDPY------- 111
Query: 479 ILPFYLPGFMHVGIWPIIMSLSMFIQMKMSPP-PADKGQAMILNW-MPVVFVFALSSFPA 536
I PI+M +MF+Q K+SP P D Q I+ + MP++F+F SFPA
Sbjct: 112 ------------YILPILMGATMFLQQKLSPSGPPDPAQQKIMMYIMPLMFLFFFLSFPA 159
Query: 537 GLIIYWSWSNVISIVQQAVIMK 558
GL++YW SN+ +I+QQ +I +
Sbjct: 160 GLVLYWVVSNLFTIIQQLIINR 181
>gnl|CDD|179202 PRK01001, PRK01001, putative inner membrane protein translocase
component YidC; Provisional.
Length = 795
Score = 149 bits (378), Expect = 2e-36
Identities = 132/475 (27%), Positives = 214/475 (45%), Gaps = 67/475 (14%)
Query: 135 LPNSNTVWNLISGKILTP--TTPIKLVFKNANNILFE-------RTISLDEH----YLFK 181
+P N++SG+ L ++V + +I+ E +T SL E Y F+
Sbjct: 318 VPPQYHALNIVSGRELAEPVALGYRVVSFDNKSIILESNDRSIRKTYSLGEPEEQPYAFE 377
Query: 182 IVDTVTNNSIDQIRFS--PRGRIMRHKPQTATNTFGVQEGFIAV----LGDKSLVEQKYS 235
+ +T +S D S P IM + A +++ + L S
Sbjct: 378 LAIQLTGDSEDLWITSGVPEVEIMSNAFAPAIKYRVIKKNKSELDKVKLPKAKDPLAVRS 437
Query: 236 DIEKSSISNFHESNSWLGIS-------DKYWASVFIPSKETSFHSQFKYLSDGHARYQAK 288
+ I N SN + GI +AS +IP ++ LS + Y A
Sbjct: 438 GVYPQWILN---SNGYFGIILTPLTPIPAGYASSYIPG--NVVPTRLSQLSPKNQAYPAS 492
Query: 289 FSANEITILP-GKSITTTNFL-FAGAKEFPTIHHYEKDLAIPRFE--MLIDW----GWFY 340
+LP K T FL +AG PT+ ++ + E +D G+F
Sbjct: 493 KYPGYEAMLPLPKEAGTYRFLVYAGPLADPTLKTLDRAYTNSKGENPEYLDSITFRGFFS 552
Query: 341 FIAKP----MFMLMSYFYNLVGNFGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKI 396
FI +P +F++M +F L G++GI+I+L TVF+KLL +PL S M+ + P I
Sbjct: 553 FITEPFAALLFIIMKFFKFLTGSWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYI 612
Query: 397 DELREKFKQSPPQVLQKAMIQLYKTHNINPLAGCWPILLQIPVFFAIYKVISISLEMRHA 456
E+++K+K+ P + Q ++ LYKT+ +NP+ GC P+L+Q+P A++ ++ S +R A
Sbjct: 613 QEIQQKYKKEPKRA-QMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLKSSFLLRGA 671
Query: 457 PFW-GWIKDLAAAD-----PTNIFTLFGILPFYLPGFMHVGIWPIIMSLSMFIQMK-MSP 509
F GWI +L A D T I+ F F+L PI++ + MF Q K S
Sbjct: 672 SFIPGWIDNLTAPDVLFSWETPIW--FIGNEFHL--------LPILLGVVMFAQQKISSL 721
Query: 510 PPAD------KGQAMILNWMPVVFVFALSSFPAGLIIYWSWSNVISIVQQAVIMK 558
+ Q + M ++F F +FP+GL IYW S ++ ++QQ V K
Sbjct: 722 KRKGPVTDQQRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSMLLGVIQQWVTNK 776
>gnl|CDD|179508 PRK02944, PRK02944, OxaA-like protein precursor; Validated.
Length = 255
Score = 141 bits (356), Expect = 6e-34
Identities = 82/228 (35%), Positives = 128/228 (56%), Gaps = 32/228 (14%)
Query: 338 WFYFIAKPMFMLMSYFYNLVG-NFGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKI 396
W + P+ L++YF NL G N+G+AI++ T+ ++LL PL KQ ST M+ +QP++
Sbjct: 36 WNEYFVYPLSQLITYFANLFGSNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEM 95
Query: 397 DELREKFK---QSPPQVLQKAMIQLYKTHNINPLAGCWPILLQIPVFFAIYKVISISLEM 453
+L+EK+ Q+ Q LQ+ M+QL++ + +NPLAGC PI +Q+P+ A Y I + E+
Sbjct: 96 QKLKEKYSSKDQATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSEI 155
Query: 454 -RHAPFWGWIKDLAAADPTNIFTLFGILPFYLPGFMHVGIWPIIMSLSMFIQMK--MSPP 510
+H+ W DL AD P+Y I PI+ ++ FIQ K M+
Sbjct: 156 SKHSFLW---FDLGQAD-----------PYY--------ILPIVAGITTFIQQKLMMAGT 193
Query: 511 PADKGQ-AMILNWMPV-VFVFALSSFPAGLIIYWSWSNVISIVQQAVI 556
Q AM+L MP+ + +FA+ +FPA L +YW N+ I Q +I
Sbjct: 194 AGQNPQMAMMLWLMPIMILIFAI-NFPAALSLYWVVGNIFMIAQTYLI 240
>gnl|CDD|178899 PRK00145, PRK00145, putative inner membrane protein translocase
component YidC; Provisional.
Length = 223
Score = 124 bits (314), Expect = 4e-29
Identities = 70/211 (33%), Positives = 105/211 (49%), Gaps = 24/211 (11%)
Query: 354 YNLVGN----FGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQSPPQ 409
+++ N +GIAI+L T+ ++LL PL KQ S+ M IQP+I +L+ K+K + PQ
Sbjct: 21 SSVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYK-NDPQ 79
Query: 410 VLQKAMIQLYKTHNINPLAGCWPILLQIPVFFAIYKVISISLEMRHAPFWGWIKDLAAAD 469
LQ+ M++LYK +NPL GC P+L+Q P+ A+Y V + + F WIKDLA D
Sbjct: 80 KLQQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNLTGINGVSFL-WIKDLAKPD 138
Query: 470 PTNIFTLFGILPFYLPGFMHVGIWPIIMSLSMFIQMKMSPPPADKGQAMILN-WMPVVFV 528
T I + YL G +M + GQ +N M +
Sbjct: 139 ITWILPILSGATTYLSG--------YLM---------TKADSSQAGQMKTMNIGMSIFMG 181
Query: 529 FALSSFPAGLIIYWSWSNVISIVQQAVIMKM 559
F + L++YW N+I I+Q I K+
Sbjct: 182 VMSWKFKSALVLYWVIGNLIQIIQTYFIKKL 212
>gnl|CDD|179310 PRK01622, PRK01622, OxaA-like protein precursor; Validated.
Length = 256
Score = 124 bits (313), Expect = 6e-29
Identities = 70/234 (29%), Positives = 113/234 (48%), Gaps = 37/234 (15%)
Query: 340 YFIAKPMFMLMSYFYNLVGNFGIAIMLTTVFVKLLFFPLA----KKQYVSTANMKNIQPK 395
YF+ F++ +++ G++GIAI++ T+ ++ L PLA K Q M ++P+
Sbjct: 40 YFVYPFSFLIQFVAHHIGGSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPE 99
Query: 396 IDELREKFKQSPPQV----LQKAMIQLYKTHNINPLA-GCWPILLQIPVFFAIYKVISIS 450
+D+++ K K + QK M++LYK+ NINPLA GC P+L+Q+P+ A Y I +
Sbjct: 100 LDKIQAKLKVTKDLEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRRT 159
Query: 451 LEMRHAPFWGWIKDLAAADPTNIFTLFGILPFYLPGFMHVGIWPIIMSLSMFIQMKMSPP 510
E+ F W +L AD I PII L+ FIQMK+S
Sbjct: 160 EEIASHSFL-WF-NLGHADH---------------------ILPIIAGLTYFIQMKVSQS 196
Query: 511 ----PADKGQAMILNWM-PVVFVFALSSFPAGLIIYWSWSNVISIVQQAVIMKM 559
P I M P + +F + P+ L++YW + + Q V+ K+
Sbjct: 197 NGTSPEQVQMLKIQGIMMPAMILFMSFAAPSALVLYWITGGLFLMGQTIVLRKV 250
>gnl|CDD|179278 PRK01315, PRK01315, putative inner membrane protein translocase
component YidC; Provisional.
Length = 329
Score = 121 bits (304), Expect = 6e-28
Identities = 67/216 (31%), Positives = 108/216 (50%), Gaps = 20/216 (9%)
Query: 361 GIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQSPPQVLQKAMIQLYK 420
++I+ + ++ L PL KQ S NM+ IQPK+ +++EK+K + + + M++LYK
Sbjct: 43 VLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEKYK-GDRERMSQEMMKLYK 101
Query: 421 THNINPLAGCWPILLQIPVFFAIYKVISISLEMRHAPFWGWIKDLAA-ADPTNIFTLFGI 479
NPL+ C P+LLQ+P+FFA+Y+V+ + R L +IF
Sbjct: 102 ETGTNPLSSCLPLLLQMPIFFALYRVLDSAAS-RGDGIGPINPPLLESFRHAHIFGAPLA 160
Query: 480 LPFYLP---GFMHV----GIWPIIMSLSMFIQM-----KMSPPPADKG-----QAMILNW 522
F G V + I+MS S FI K PP A G Q M+L
Sbjct: 161 ATFLQALNAGNTAVQVVAAVLIILMSASQFITQLQLMTKNMPPEAKTGPMAQQQKMLLYL 220
Query: 523 MPVVFVFALSSFPAGLIIYWSWSNVISIVQQAVIMK 558
P++F+ + +FP G++ YW SNV ++ QQ +++
Sbjct: 221 FPLMFLVSGIAFPVGVLFYWLTSNVWTMGQQFYVIR 256
>gnl|CDD|179426 PRK02463, PRK02463, OxaA-like protein precursor; Provisional.
Length = 307
Score = 82.9 bits (205), Expect = 2e-16
Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 35/235 (14%)
Query: 337 GWFY-FIAKPMFMLMSYFYNLVG-NFGIAIMLTTVFVKLLFFPL----AKKQYVSTANMK 390
G+ + F+ PM + YF N +G FG+AI++ T+ V+L+ PL + K + M
Sbjct: 35 GFIWNFLGAPMSYFIDYFANNLGLGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMA 94
Query: 391 NIQPKIDELREKFKQSPPQ----VLQKAMIQLYKTHNINPLA--GCWPILLQIPVFFAIY 444
++P + + E+ K + Q Q ++ + + I+ L GC P+L+Q+P F A+Y
Sbjct: 95 YLKPVFEPINERLKNATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSALY 154
Query: 445 KVISISLEMRHAPFWGWIKDLAAADPTNIFTLFGILPFYLPGFMHVGIWPIIMS-LSMFI 503
+ + + F G DL + L I +G+ S LSM
Sbjct: 155 FAAQYTKGVSTSTFLGI--DLGSPS----LVLTAI----------IGVLYFFQSWLSM-- 196
Query: 504 QMKMSPPPADKGQAM-ILNWMPVVFVFALSSFPAGLIIYWSWSNVISIVQQAVIM 557
M P + Q ++ MP++ V S PAG+ +YW SI+QQ +
Sbjct: 197 ---MGVPEEQREQMKAMMYMMPIMMVVFSFSSPAGVGLYWLVGGFFSIIQQLITT 248
>gnl|CDD|179458 PRK02654, PRK02654, putative inner membrane protein translocase
component YidC; Provisional.
Length = 375
Score = 81.6 bits (202), Expect = 5e-16
Identities = 35/103 (33%), Positives = 63/103 (61%), Gaps = 6/103 (5%)
Query: 346 MFMLMSYFYNLVGNFGIAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQP----KIDELRE 401
M ++ +FY +V ++G+AI+ T+ ++ +PL+ + MK QP + E++E
Sbjct: 13 MLPILDFFYGIVPSYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQE 72
Query: 402 KFKQSPPQVLQKAMIQLYKTHNINPLAGCWPILLQIPVFFAIY 444
++K + PQ Q+ M +L K NPLAGC P+L+Q+P+ FA++
Sbjct: 73 RYK-NDPQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALF 113
>gnl|CDD|179383 PRK02201, PRK02201, putative inner membrane protein translocase
component YidC; Provisional.
Length = 357
Score = 76.6 bits (189), Expect = 2e-14
Identities = 51/206 (24%), Positives = 94/206 (45%), Gaps = 21/206 (10%)
Query: 362 IAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFK------QSPPQVLQKAM 415
+AI++ + ++L+ F + K + + +Q K ++ K+K Q Q Q+ +
Sbjct: 135 LAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKDYKKDKQMK-QRKQQEI 193
Query: 416 IQLYKTHNINPLAGCWPILLQIPVFFAIYKVISISLEMRHAPFWGWIKDLAAADPTNIFT 475
+LYK HNI+P + + + +P+F A+Y+V+ ++ W I DL+A IF
Sbjct: 194 QELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQSLPSIKVT-TWLGI-DLSATSWQEIFA 251
Query: 476 -LFGILPFYLPGFMHVGIWPIIMSLSMFIQMK--------MSPPPADKGQAMILNWMPVV 526
+ LP + + V + + L + K + A K Q N + +V
Sbjct: 252 GNWIYLPILI---IVVPVQALSQLLPQILNKKKNKERTLNVKEKEALKKQNKTQNIISIV 308
Query: 527 FVFALSSFPAGLIIYWSWSNVISIVQ 552
F+F F AG+ IYW + +I+Q
Sbjct: 309 FIFFGVIFAAGVQIYWIIGGIWTILQ 334
>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase
component YidC; Provisional.
Length = 304
Score = 74.3 bits (183), Expect = 7e-14
Identities = 58/278 (20%), Positives = 105/278 (37%), Gaps = 63/278 (22%)
Query: 341 FIAKPMFMLMSYFYNLVG------NFG---IAIMLTTVFVKLLFFPLAKKQYVSTANMKN 391
FI P+ ++ +++ L N +++M ++ L + +Q +T M+
Sbjct: 4 FIYYPVSAILWFWHKLFSFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQE 63
Query: 392 IQPKIDELREKFKQSPPQVLQKAMIQLYKTHNINPLAGCWPILLQIPVFFAIYKVI---- 447
+QP+I L++K+ Q + M +L K H NP+ GC P+L QIPVF ++ V+
Sbjct: 64 LQPQIKALQKKYGNDR-QKMALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSFN 122
Query: 448 ---------SISLEMRH----------------------APFWGWIKDLAAA-DPTNIFT 475
+S+E AP +I + D FT
Sbjct: 123 RTGTGFGQLGMSVEENRNTPNYVFSAEDVQSFLDARLFGAPLSAYITMPRSGLDAFVDFT 182
Query: 476 LFGILPFYLPGFMHVGIWPIIMSLSMFIQMKMS-----PPPADKGQAMILN----W-MPV 525
I+ +P M II ++ + S A Q ++N W P+
Sbjct: 183 RTNIILVGVP-LM------IIAGVATHFNSRASVARQSAEAAANPQTAMMNKLALWVFPL 235
Query: 526 VFVFALSSFPAGLIIYWSWSNVISIVQQAVIMKMHGAE 563
+ P +++YW +N+ + QQ + E
Sbjct: 236 GVLVGGPFLPLAILLYWVSNNIWTFGQQHYVFGKIDKE 273
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 66.0 bits (161), Expect = 2e-11
Identities = 57/244 (23%), Positives = 96/244 (39%), Gaps = 55/244 (22%)
Query: 362 IAIMLTTVFVKLLFFPLAKKQYVSTANMKNIQPKIDELREKFKQSPPQVLQKAMIQ---- 417
++ + V+ + P +QY S +I+PK LRE++K + + + Q
Sbjct: 34 ASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDEASIRELQQKQKD 93
Query: 418 LYKTHNINPLAGCWPILLQIPVFFAIYKVISISLEM----------RHAPFWGWIKDLAA 467
L K + NPLAGC P L+QIPVF +Y+V+ L M H P I L +
Sbjct: 94 LNKEYGYNPLAGCVPALIQIPVFLGLYQVL---LRMARPEGGLENPVHQP----IGFLTS 146
Query: 468 AD--------------------PTNIFTLFG-----ILPFYLPGFMHVGIWPII-MSLSM 501
+ P G +L F LP F+ ++ I M++S
Sbjct: 147 EEVESFLQGRVFNVPLPAYVSMPAEQLAYLGTTQATVLAFVLPLFIAAAVFTAINMAMST 206
Query: 502 F--IQMKMSPPPADKGQAMILNWMPVV-----FVFALSS-FPAGLIIYWSWSNVISIVQQ 553
+ Q G L M ++ L+ FP + +YW +N+ +++Q
Sbjct: 207 YRSFQTNDHDSGFAVGMLKFLIVMAILAPIFPLSLGLTGPFPTAIALYWVANNLWTLIQN 266
Query: 554 AVIM 557
++
Sbjct: 267 IIMY 270
>gnl|CDD|181145 PRK07850, PRK07850, acetyl-CoA acetyltransferase; Provisional.
Length = 387
Score = 31.6 bits (72), Expect = 0.52
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 40 IQTVKQPNQVDNSYAAVLI--DDRAQALSMSPRVELKNPSLIGS 81
I T +Q+ + AAVL +DRA+AL + PR + +L+G+
Sbjct: 235 IHTAGTSSQISDGAAAVLWMDEDRARALGLRPRARIVAQALVGA 278
>gnl|CDD|184876 PRK14876, PRK14876, conjugal transfer mating pair stabilization
protein TraN; Provisional.
Length = 928
Score = 31.0 bits (70), Expect = 0.92
Identities = 37/158 (23%), Positives = 59/158 (37%), Gaps = 36/158 (22%)
Query: 70 RVELKNPSLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTKNAYFAELDYVST 129
RV++ NP I S L+ A++DD ++ V S + E T
Sbjct: 274 RVQVSNPDAIISATLERAKWDD------YMQVLVGKSGQETKVWSGPDGVFPPE-----T 322
Query: 130 ANNIELPNSNTVWNLISGKILTPTTPIKLVFKNANNILFERTISLDEHYLFKIVDTVTNN 189
A E +T W P I FK+ + + FKI +VT
Sbjct: 323 AGRCE---RSTSWE------RNPNVDITPKFKSVKD---------GDVVTFKIRTSVTGA 364
Query: 190 SID----QIRFSPRGRIMRHK--PQTATNTF-GVQEGF 220
+IR+ P I + + PQ+ ++ GV++GF
Sbjct: 365 GEGYGRIKIRYDPAKAITKDEWAPQSCMDSAKGVEDGF 402
>gnl|CDD|151684 pfam11242, DUF2774, Protein of unknown function (DUF2774). This is
a viral family of proteins with unknown function.
Length = 63
Score = 29.7 bits (67), Expect = 2.2
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 16/64 (25%)
Query: 371 VKLLFFPLAKKQYVSTANMKNIQPK--------IDELREKFKQSPPQVLQKAMIQLYKTH 422
V++ F + +V A +I+ K ++ REKFK V Y+
Sbjct: 4 VQVHFLHESGLGFVEIAKKYDIRAKDVAKLWVMVETAREKFKTREKVV--------YRKR 55
Query: 423 NINP 426
+IN
Sbjct: 56 HINK 59
>gnl|CDD|166628 PLN02987, PLN02987, Cytochrome P450, family 90, subfamily A.
Length = 472
Score = 28.8 bits (64), Expect = 3.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 459 WGWIKDLAAADPTNIFTLFGILPFYLPGF 487
W W + P+N+FT FG P PG+
Sbjct: 393 WRWQSNSGTTVPSNVFTPFGGGPRLCPGY 421
>gnl|CDD|161683 TIGR00054, TIGR00054, RIP metalloprotease RseP. A model that
detects fragments as well matches a number of members of
the PEPTIDASE FAMILY S2C. The region of match appears
not to overlap the active site domain.
Length = 420
Score = 29.0 bits (65), Expect = 3.6
Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 4/73 (5%)
Query: 105 SPIVTLLSP-SNTKNAYFAELDYVSTANNIELPNSNTVWNLISGKILTPTTPIKLVFKNA 163
P++ LL S A D + + N ++P V I+ P I
Sbjct: 129 GPVIELLDKNSIALEAGIEPGDEILSVNGNKIPGFKDVRQQIADIAGEPMVEILA---ER 185
Query: 164 NNILFERTISLDE 176
N FE L
Sbjct: 186 ENWTFEVMKELIP 198
>gnl|CDD|182537 PRK10547, PRK10547, chemotaxis protein CheA; Provisional.
Length = 670
Score = 28.2 bits (63), Expect = 5.8
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 30 IEEMNNERKNIQTVKQPNQVDNSYAAVLIDDRAQ 63
++ + E N+ T+ + +S A L A+
Sbjct: 173 VDLLEEELGNLGTLTDVVKGADSLEATLPGSVAE 206
>gnl|CDD|152562 pfam12127, YdfA_immunity, SigmaW regulon antibacterial. This
protein is found in bacteria. Proteins in this family
are about 330 amino acids in length. The operon from
which this protein is derived confers immunity for the
host species to a broad range of antibacterial
compounds, unlike the specific immunity proteins that
are linked to and co-regulated with their
antibiotic-synthesis proteins.
Length = 321
Score = 28.1 bits (63), Expect = 6.1
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 438 PVFFAIYKVISISLEMRHAPFWGWIKDLAAADPTNIFTLFG 478
+ A +I +++ P WI LA+ +IFTL G
Sbjct: 6 ILVIAALILIFLAVFFSFVPVGLWISALASGVKVSIFTLVG 46
>gnl|CDD|117326 pfam08756, YfkB, YfkB-like domain. This protein is adjacent to
YfkA in B. subtilis. In other bacterial species it is
fused to this protein. As YfkA contains a Radical SAM
domain it suggests this domain is interacts with them.
Length = 153
Score = 27.7 bits (62), Expect = 8.2
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 448 SISL-EMRHAPFWGWIKDLAAADPTNIFTLFGILPFY 483
+SL E+R A I L N++ LFG LPFY
Sbjct: 12 VLSLDEIREA-----IHRLLDIRDENVWMLFGTLPFY 43
>gnl|CDD|185102 PRK15180, PRK15180, Vi polysaccharide biosynthesis protein TviD;
Provisional.
Length = 831
Score = 27.4 bits (60), Expect = 9.8
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 11 IALSVIIVYAWQNFYVYP--RIEEMNNERK 38
++LS + Y++ F VYP RI NNE K
Sbjct: 551 VSLSTSLAYSYSAFMVYPHSRISRFNNEVK 580
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.323 0.137 0.417
Gapped
Lambda K H
0.267 0.0719 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 9,575,768
Number of extensions: 623176
Number of successful extensions: 1232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1185
Number of HSP's successfully gapped: 45
Length of query: 581
Length of database: 5,994,473
Length adjustment: 99
Effective length of query: 482
Effective length of database: 3,855,281
Effective search space: 1858245442
Effective search space used: 1858245442
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (26.9 bits)