RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780483|ref|YP_003064896.1| putative inner membrane
protein translocase component YidC [Candidatus Liberibacter asiaticus
str. psy62]
(581 letters)
>3blc_A Inner membrane protein OXAA; YIDC, membrane assembly
facilitator, chaperone, periplasmic domain,
transmembrane, chaperone; 2.50A {Escherichia coli K12}
(A:)
Length = 330
Score = 203 bits (517), Expect = 6e-53
Identities = 54/337 (16%), Positives = 114/337 (33%), Gaps = 23/337 (6%)
Query: 38 KNIQTVKQPN-QVDNSYAAVLIDDRAQALSMSPRVELKNPSLIGSINLKGAQFDDLNLRG 96
KN Q Q Q + A D A + +K L +IN +G + L
Sbjct: 3 KNPQPQAQQTTQTTTTAAGSAADQGVPASGQGKLISVKTDVLDLTINTRGGDVEQALLPA 62
Query: 97 YHLDVSSNSPIVTLLSPSNTKNAYFAELDYVSTA-NNIELPNSNTVWNLISGKILT---- 151
Y +++S P L + Y A+ + ++N+ +
Sbjct: 63 YPKELNSTQPFQLLETSPQ--FIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQ 120
Query: 152 PTTPIKLVFKNANNILFERTISLDE-HYLFKIVDTVTNNSIDQIRFSPRGRIMRH----- 205
+ + +A F +T L Y + V N + S G++ +
Sbjct: 121 NELQVPXTYTDAAGNTFTKTFVLKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPP 180
Query: 206 KPQTATNTFGVQEGFIAVLG--DKSLVEQKYSDIEKSSISNFHESNSWLGISDKYWASVF 263
T ++ F + A D + + I + N W+ +Y+A+ +
Sbjct: 181 HLDTGSSNFALHTFRGAAYSTPDAAYAAYAFDTIADNENLNISSKGGWVAXLQQYFATAW 240
Query: 264 IPSKETSFHSQFKYLSDGHARYQAKFSANEITILPGKSITTTNFLFAGAKEFPTIHHYEK 323
IP + + + L +G + + + + PG++ + L+ G +
Sbjct: 241 IPHNDGTNNFYTANLGNG--IAAIGYKSQPVLVQPGQTGAXNSTLWVGPEIQDKXAAVA- 297
Query: 324 DLAIPRFEMLIDWGWFYFIAKPMFMLMSYFYNLVGNF 360
P ++ +D+GW +FI++P+ + + +
Sbjct: 298 ----PHLDLTVDYGWLWFISQPLLVPRGSLEHHHHHH 330
>3bs6_A Inner membrane protein OXAA; YIDC/OXA1/ALB3 family, membrane
insertion, chaperone, SEC translocon, periplasmic
domain, beta supersandwich fold; HET: PG4 PGE 2PE; 1.80A
{Escherichia coli} (A:)
Length = 280
Score = 175 bits (445), Expect = 1e-44
Identities = 43/286 (15%), Positives = 98/286 (34%), Gaps = 22/286 (7%)
Query: 68 SPRVELKNPSLIGSINLKGAQFDDLNLRGYHLDVSSNSPIVTLLSPSNTKNAYFAELDYV 127
+ +K L +IN +G + L Y +++S P L ++ + Y A+
Sbjct: 3 GKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQ--LLETSPQFIYQAQSGLT 60
Query: 128 STA-NNIELPNSNTVWNLISGK-ILTP---TTPIKLVFKNANNILFERTISLDE-HYLFK 181
+ ++N+ +L + + +A F +T L Y
Sbjct: 61 GRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPXTYTDAAGNTFTKTFVLKRGDYAVN 120
Query: 182 IVDTVTNNSIDQIRFSPRGRIMRH-----KPQTATNTFGVQE--GFIAVLGDKSLVEQKY 234
+ V N + S G++ + T ++ F + G D+ + K+
Sbjct: 121 VNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFALHTFRGAAYSTPDEKYEKYKF 180
Query: 235 SDIEKSSISNFHESNSWLGISDKYWASVFIPSKETSFHSQFKYLSDGHARYQAKFSANEI 294
I + N W+ +Y+A+ +IP + + + L +G + + +
Sbjct: 181 DTIADNENLNISSKGGWVAXLQQYFATAWIPHNDGTNNFYTANLGNG--IAAIGYKSQPV 238
Query: 295 TILPGKSITTTNFLFAGAKEFPTIHHYEKDLAIPRFEMLIDWGWFY 340
+ PG++ + L+ G + P ++ +D +
Sbjct: 239 LVQPGQTGAXNSTLWVGPEIQDKXAAVA-----PHLDLTVDHHHHH 279
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} (A:97-199)
Length = 103
Score = 27.5 bits (61), Expect = 5.0
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 237 IEKSSISNFHESNSWLGISDKYWASVFIPSKETSFH 272
+ S +F E + S K+ + +P ++SF+
Sbjct: 38 FQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFY 73
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal
phosphate, structural genomics, PSI, protein structure
initiative; HET: PLP; 2.00A {Escherichia coli}
(A:34-83,A:275-319)
Length = 95
Score = 27.3 bits (61), Expect = 5.2
Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 1/22 (4%)
Query: 405 QSPPQVLQKAMIQLYKTHNINP 426
Q P QV+ A + Y+
Sbjct: 1 QKPSQVID-AEAEFYRHGYAAV 21
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, cytoplasm,
nucleus, phosphoprotein, UBL conjugation pathway, WD
repeat, nuclear protein; 1.60A {Saccharomyces
cerevisiae} (A:1-86)
Length = 86
Score = 27.4 bits (61), Expect = 5.5
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 4/40 (10%)
Query: 375 FFPLAKKQYVS--TANMKNIQPKIDELREKFKQSPPQVLQ 412
P KQY+ N I I ++ K ++L
Sbjct: 4 VLP--VKQYLIMENYNPDTIFNGIVKINSNEKTFDDEILA 41
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme,
transferase; HET: 2OS PLP; 1.80A {Synechocystis SP}
(A:38-88,A:279-301)
Length = 74
Score = 27.1 bits (60), Expect = 6.2
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 405 QSPPQVLQKAMIQLYKTHNINP 426
Q P VL+ ++ Y+ N N
Sbjct: 2 QKPRAVLE-KLMHYYENDNANV 22
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase
membrane protein translocation protein- protein complex,
ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
(G:1-181)
Length = 181
Score = 27.1 bits (60), Expect = 6.3
Identities = 12/93 (12%), Positives = 28/93 (30%), Gaps = 9/93 (9%)
Query: 472 NIFTLFGILPFYLPGFMHVGIWPIIMSLSMF--------IQMKMSPPPADKGQAMILNWM 523
++ +F +G+ P I + M +++ D G+ I +
Sbjct: 57 ALYDIFSGGNLGRLTVFALGVMPYISASIMMQLLTVAIPSLQRLAKEEGDYGRYKINEYT 116
Query: 524 PVVFVFALSSFPAGLIIYWSWSNVISIVQQAVI 556
+++ + I +W V V
Sbjct: 117 -KYLTLFVATVQSLGIAFWIRGQVSPKGIPVVE 148
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein,
transmembrane, phosphoprotein, signal sequence,
membrane, ribosome, cytoplasm; 8.60A {Saccharomyces
cerevisiae} PDB: 2wwa_A (A:1-215)
Length = 215
Score = 27.1 bits (60), Expect = 6.5
Identities = 18/118 (15%), Positives = 31/118 (26%), Gaps = 11/118 (9%)
Query: 453 MRHAPFWGWIKDLAAADPTNIFTLFGILPFYLPGFMHVGIWPIIMS--------LSMFIQ 504
P G K I+ L G+ + G++P I S I+
Sbjct: 45 FAQFPLVGLPKATTPNVNDPIYFLRGVFGCEPRTLLEFGLFPNISSGLILQLLAGLKVIK 104
Query: 505 MKMSPPPADKGQAMILNWMPVVFVFALS---SFPAGLIIYWSWSNVISIVQQAVIMKM 559
+ + + +V L+ F S + I Q V +
Sbjct: 105 VNFKIQSDRELFQSLTKVFAIVQYVILTNIFIFAGYFGDDLSVVQIGLINFQLVGAGI 162
>1uvj_A P2 protein; polymerase/complex, RNA-dependent RNA
polymerase, oligonucleotide, polymerase; 1.9A
{Bacteriophage phi-6} (A:1-208,A:255-664)
Length = 618
Score = 26.9 bits (59), Expect = 7.4
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 15/69 (21%)
Query: 455 HAPFW-GWIKDLAAADPTNIFTLFGILPFYLPGFMHVGIWPIIMSLSMFIQMKMSPPPAD 513
H FW GW++DL + N+ G P W + S+ + + + P +
Sbjct: 282 HDTFWPGWLRDLICDELLNM----GYAP----------WWVKLFETSLKLPVYVGAPAPE 327
Query: 514 KGQAMILNW 522
+G ++ +
Sbjct: 328 QGHTLLGDP 336
>1rh5_A Preprotein translocase SECY subunit; protein translocation,
SECY, membrane protein, protein channels, protein
transport; 3.20A {Methanocaldococcus jannaschii} (A:)
Length = 436
Score = 26.9 bits (59), Expect = 8.0
Identities = 12/117 (10%), Positives = 37/117 (31%), Gaps = 10/117 (8%)
Query: 446 VISISLEMRHAPFWGWIKDLAAADPTNIFTLFGILPFYLPGFMHVGIWPIIMSLSMFIQM 505
V+ + M + A P I + + +GI PI+ + + +Q+
Sbjct: 33 VLVLYFIMGCIDVYT----AGAQIPAIFEFWQTITASRIGTLITLGIGPIVTA-GIIMQL 87
Query: 506 KMSPPPADKGQAM-----ILNWMPVVFVFALSSFPAGLIIYWSWSNVISIVQQAVIM 557
+ ++ + + + A L + +++ + +++
Sbjct: 88 LVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAFGILTPLLAFLVI 144
>3ebb_A Phospholipase A2-activating protein; armadillo repeat,
structural genomics consortium, SGC, WD repeat,
acetylation, ATP-binding; 1.90A {Homo sapiens} (A:1-189)
Length = 189
Score = 26.8 bits (59), Expect = 8.3
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 6/69 (8%)
Query: 375 FFPLAKKQYVSTANMKNIQPKIDELREK----FKQSPPQV--LQKAMIQLYKTHNINPLA 428
+FP + AN I K+ EL K + + L+K + + + + P
Sbjct: 43 YFPKKEAVTFDQANPTQILGKLKELNGTAPEEKKLTEDDLILLEKILSLICNSSSEKPTV 102
Query: 429 GCWPILLQI 437
IL +
Sbjct: 103 QQLQILWKA 111
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.323 0.137 0.417
Gapped
Lambda K H
0.267 0.0683 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 4,454,312
Number of extensions: 201106
Number of successful extensions: 422
Number of sequences better than 10.0: 1
Number of HSP's gapped: 414
Number of HSP's successfully gapped: 23
Length of query: 581
Length of database: 4,956,049
Length adjustment: 93
Effective length of query: 488
Effective length of database: 1,812,184
Effective search space: 884345792
Effective search space used: 884345792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (25.8 bits)