RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780483|ref|YP_003064896.1| putative inner membrane
protein translocase component YidC [Candidatus Liberibacter asiaticus
str. psy62]
         (581 letters)



>d1n26a2 b.1.2.1 (A:94-195) Interleukin-6 receptor alpha chain,
           domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 102

 Score = 27.9 bits (62), Expect = 2.1
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 237 IEKSSISNFHESNSWLGISDKYWASVFIPSKETSFH 272
            + S   +F E   +   S K+   + +P  ++SF+
Sbjct: 41  FQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFY 76


>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
           gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 248

 Score = 27.0 bits (59), Expect = 3.8
 Identities = 3/26 (11%), Positives = 16/26 (61%)

Query: 380 KKQYVSTANMKNIQPKIDELREKFKQ 405
           + + +   + + +  ++DE R+++++
Sbjct: 222 EFKSIDEVDFEKLSRELDESRDRYRR 247


>d1ygpa_ c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 876

 Score = 26.5 bits (58), Expect = 6.2
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 14/85 (16%)

Query: 499 LSMFIQMKMSPPPADKGQAMILNWMPVVFVFALSSFP----AGLIIYWSWSNVISIVQQA 554
           +  ++ MK         + +   +   V +F   S P    A LII    + V  IV   
Sbjct: 620 IYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKL-INCVADIVNND 678

Query: 555 VIMKMHGAEIGLIDRLRSTFSKNYN 579
             ++           L+  F  +YN
Sbjct: 679 ESIE---------HLLKVVFVADYN 694


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,206,635
Number of extensions: 104065
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 13
Length of query: 581
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 491
Effective length of database: 1,171,896
Effective search space: 575400936
Effective search space used: 575400936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.7 bits)