HHsearch alignment for GI: 254780484 and conserved domain: COG0486
>COG0486 ThdF Predicted GTPase [General function prediction only].
Probab=99.95 E-value=4.3e-27 Score=174.87 Aligned_cols=161 Identities=24% Similarity=0.285 Sum_probs=125.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 68689997489988989999973897379873888414521202665556785089649999760010111224478988
Q gi|254780484|r 28 GPPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSW 107 (212)
Q Consensus 28 ~~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~ 107 (212)
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~-AIVTdI~GTTRDv------iee~i~i~G~pv~l~DTAGiRet~d~VE~iGIe 288 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDR-AIVTDIAGTTRDV------IEEDINLNGIPVRLVDTAGIRETDDVVERIGIE 288 (454)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC-EEECCCCCCCCCE------EEEEEEECCEEEEEEECCCCCCCCCHHHHHHHH
T ss_conf 586499987998867999998866786-6742899974103------789999898899998567766673489999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 88998777766420000011223578875454554321025753221222211110246899999999997531368986
Q gi|254780484|r 108 GGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPE 187 (212)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (212)
T Consensus 289 -----Rs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~~~----------~~~~~~~ 352 (454)
T COG0486 289 -----RAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELESE----------KLANGDA 352 (454)
T ss_pred -----HHHHHHHHCCEEEEEEECCCCCCHHHHHHHH-HCCCCCCEEEEEECHHCCCCCCCCHH----------HCCCCCC
T ss_conf -----9999998599899997088777601177887-24368977999960211564321012----------0267882
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Q ss_conf 899988888998999999998728
Q gi|254780484|r 188 VIPTSSVKRKGIEVLRKAILETIN 211 (212)
Q Consensus 188 i~~vSA~~g~Gi~eL~~~I~~~l~ 211 (212)
T Consensus 353 ~i~iSa~t~~Gl~~L~~~i~~~~~ 376 (454)
T COG0486 353 IISISAKTGEGLDALREAIKQLFG 376 (454)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 699982576579999999999986