HHsearch alignment for GI: 254780484 and conserved domain: COG1084

Probab=99.90  E-value=4.2e-23  Score=151.98  Aligned_cols=173  Identities=20%  Similarity=0.270  Sum_probs=119.5

Q ss_pred             CCHHHCC--CCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHH
Q ss_conf             6567588--76686899974899889899999738973798738884145212026655567850896499997600101
Q gi|254780484|r   19 PEIGLLP--KAGPPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGY   96 (212)
Q Consensus        19 ~~~~~~P--~~~~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~   96 (212)
T Consensus       156 ~~l~~LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Ak--pEvA~YPFTTK~i~v------Ghfe~~~~R~QvIDTPGlLD  227 (346)
T COG1084         156 DHLKKLPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAK--PEVAPYPFTTKGIHV------GHFERGYLRIQVIDTPGLLD  227 (346)
T ss_pred             HHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCC--CCCCCCCCCCCCEEE------EEEECCCCEEEEECCCCCCC
T ss_conf             9985088779999738985699875899998875489--766788853365467------65504870589842886457


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC----CCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             112244789888899877776642000001122----3578875454554321025753221222211110246899999
Q gi|254780484|r   97 ARAPKKNVDSWGGLIVRYLSERSTLRCVYLLID----CRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLE  172 (212)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~  172 (212)
T Consensus       228 RPl~ErN~IE~qAi~AL~----hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~  303 (346)
T COG1084         228 RPLEERNEIERQAILALR----HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEA  303 (346)
T ss_pred             CCHHHHCHHHHHHHHHHH----HHCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             885773689999999999----7428589997685002899999999999999853887699974101246667899999


Q ss_pred             HHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             9999975313689868999888889989999999987
Q gi|254780484|r  173 KTKYLIRNYPTAHPEVIPTSSVKRKGIEVLRKAILET  209 (212)
Q Consensus       173 ~~~~~~~~~~~~~~~i~~vSA~~g~Gi~eL~~~I~~~  209 (212)
T Consensus       304 ~~~~------~~~~~~~~~~~~~~~~~d~~~~~v~~~  334 (346)
T COG1084         304 SVLE------EGGEEPLKISATKGCGLDKLREEVRKT  334 (346)
T ss_pred             HHHH------HCCCCCCCEEEEEHHHHHHHHHHHHHH
T ss_conf             9876------326554313543000178899999887