HHsearch alignment for GI: 254780484 and conserved domain: COG3523
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport].
Probab=96.85 E-value=0.0026 Score=38.17 Aligned_cols=125 Identities=19% Similarity=0.179 Sum_probs=61.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC-CEEEECCCCCE----EEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHH--H
Q ss_conf 68689997489988989999973897-37987388841----45212026655567850896499997600101112--2
Q gi|254780484|r 28 GPPEIAFSGRSNVGKSSLINILVNRK-NLARTSNAPGR----TQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARA--P 100 (212)
Q Consensus 28 ~~p~VaivG~~NvGKSSLiNaL~g~~-~~a~~~~~p~t----t~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~--~ 100 (212)
T Consensus 124 eLPWy~viG~pgsGKTtal~~-sgl~Fpl~~~~~~~~~~~~gT~~cdw----------wf~deaVlIDtaGry~~q~s~~ 192 (1188)
T COG3523 124 ELPWYMVIGPPGSGKTTALLN-SGLQFPLAEQMGALGLAGPGTRNCDW----------WFTDEAVLIDTAGRYITQDSAD 192 (1188)
T ss_pred CCCCEEEECCCCCCCCHHHHC-CCCCCCCHHHHCCCCCCCCCCCCCCC----------CCCCCEEEECCCCCEECCCCCC
T ss_conf 188058854888984008751-55366615553312226888733575----------4255348985875244366750
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHCCCCCCC---CCCCCCCHHH----------HHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 4478988889987777--664200000112---2357887545----------4554321025753221222211110
Q gi|254780484|r 101 KKNVDSWGGLIVRYLS--ERSTLRCVYLLI---DCRHGVKQID----------QDVFSFLDKKAVSYQIVLTKIDKLS 163 (212)
Q Consensus 101 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~~~~----------~~~~~~~~~~~~~~~~v~nK~D~~~ 163 (212)
T Consensus 193 ~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 193 EVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 234888999888999735578886379997899973899999999999999999999984156776389986210021