HHsearch alignment for GI: 254780484 and conserved domain: PRK06995
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.12 E-value=0.002 Score=38.78 Aligned_cols=127 Identities=14% Similarity=0.059 Sum_probs=57.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC-------CCCEEEECCCCCEEEEC----CE---EEEEEE----------EEEEECCCEE
Q ss_conf 899974899889899999738-------97379873888414521----20---266555----------6785089649
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVN-------RKNLARTSNAPGRTQHL----NF---FVPKDF----------SNLKNNLPAM 86 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g-------~~~~a~~~~~p~tt~~~----~~---~~~~~~----------~~~~~~~~~~ 86 (212)
T Consensus 178 V~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv~~~~eL~~aL~~l~~~dl 257 (404)
T PRK06995 178 VFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALAELRNKHI 257 (404)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCE
T ss_conf 58986688876375899999999998389837999768754789999999998759559995999999999997089999
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 99976001011122447898888998777766420000011223578875454554321025753221222211110246
Q gi|254780484|r 87 ALVDMPGYGYARAPKKNVDSWGGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTT 166 (212)
Q Consensus 87 ~~~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~ 166 (212)
T Consensus 258 ILIDTaGrs~rD~--~~~e~l~~l~~-----~~~~~~~~LVLsat--~~~~dl~~i~~~f~~~~~~~~I~TKLDEt~~~G 328 (404)
T PRK06995 258 VLIDTVGMSQRDR--MVSEQIAMLHG-----AGAPVQRLLLLNAT--SHGDTLNEVVQAYRGPGLAGCILTKLDEAASLG 328 (404)
T ss_pred EEEECCCCCCCCH--HHHHHHHHHHH-----CCCCCEEEEEECCC--CCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
T ss_conf 9980999897688--89999999973-----57885289997798--999999999998446999839983040679723