HHsearch alignment for GI: 254780484 and conserved domain: PRK06995

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.12  E-value=0.002  Score=38.78  Aligned_cols=127  Identities=14%  Similarity=0.059  Sum_probs=57.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHC-------CCCEEEECCCCCEEEEC----CE---EEEEEE----------EEEEECCCEE
Q ss_conf             899974899889899999738-------97379873888414521----20---266555----------6785089649
Q gi|254780484|r   31 EIAFSGRSNVGKSSLINILVN-------RKNLARTSNAPGRTQHL----NF---FVPKDF----------SNLKNNLPAM   86 (212)
Q Consensus        31 ~VaivG~~NvGKSSLiNaL~g-------~~~~a~~~~~p~tt~~~----~~---~~~~~~----------~~~~~~~~~~   86 (212)
T Consensus       178 V~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv~~~~eL~~aL~~l~~~dl  257 (404)
T PRK06995        178 VFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALAELRNKHI  257 (404)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCE
T ss_conf             58986688876375899999999998389837999768754789999999998759559995999999999997089999


Q ss_pred             EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             99976001011122447898888998777766420000011223578875454554321025753221222211110246
Q gi|254780484|r   87 ALVDMPGYGYARAPKKNVDSWGGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTT  166 (212)
Q Consensus        87 ~~~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~  166 (212)
T Consensus       258 ILIDTaGrs~rD~--~~~e~l~~l~~-----~~~~~~~~LVLsat--~~~~dl~~i~~~f~~~~~~~~I~TKLDEt~~~G  328 (404)
T PRK06995        258 VLIDTVGMSQRDR--MVSEQIAMLHG-----AGAPVQRLLLLNAT--SHGDTLNEVVQAYRGPGLAGCILTKLDEAASLG  328 (404)
T ss_pred             EEEECCCCCCCCH--HHHHHHHHHHH-----CCCCCEEEEEECCC--CCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
T ss_conf             9980999897688--89999999973-----57885289997798--999999999998446999839983040679723