HHsearch alignment for GI: 254780484 and conserved domain: TIGR02729
>TIGR02729 Obg_CgtA GTP-binding protein Obg/CgtA; InterPro: IPR014100 This entry describes a universal, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure..
Probab=99.78 E-value=3.8e-19 Score=129.21 Aligned_cols=117 Identities=22% Similarity=0.193 Sum_probs=79.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECC----CEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 9997489988989999973897379873888414521202665556785089----649999760010111224478988
Q gi|254780484|r 32 IAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNL----PAMALVDMPGYGYARAPKKNVDSW 107 (212)
Q Consensus 32 VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~----~~~~~~DtpG~~~~~~~~~~~~~~ 107 (212)
T Consensus 161 VGLvGfPNAGKSTLLs~~S~Ak--PKiAdYPFTTL~P~LG------vv~~~~~~Y~~~fviADIPGLIEGAs~G~GLG~~ 232 (296)
T TIGR02729 161 VGLVGFPNAGKSTLLSAISNAK--PKIADYPFTTLEPNLG------VVRVDDNKYERSFVIADIPGLIEGASEGKGLGHK 232 (296)
T ss_pred EEEECCCCCCHHHHHHHHHCCC--CEECCCCCCCCCCCEE------EEEECCCCEEEEEEEEECCCCHHHHHCCCCCCHH
T ss_conf 2103578874688888876278--8223878745653112------8987487416889998568615666268875335
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCC-----C----CHHHHHHHHHH-----CCCCCCCCCCCCCCCCC
Q ss_conf 88998777766420000011223578-----8----75454554321-----02575322122221111
Q gi|254780484|r 108 GGLIVRYLSERSTLRCVYLLIDCRHG-----V----KQIDQDVFSFL-----DKKAVSYQIVLTKIDKL 162 (212)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~~-----~~~~~~~~~v~nK~D~~ 162 (212)
T Consensus 233 FLKH------IERt~~L~hviD~~~~qlSkh~~~~p~~~y~~l~~EL~~Y~~~L~~k~~~iv~NK~Dl~ 295 (296)
T TIGR02729 233 FLKH------IERTRLLLHVIDASGIQLSKHDGRDPIEDYETLRNELELYSPELADKPQIIVLNKIDLL 295 (296)
T ss_pred HHHH------HHHEEEEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHCCCCEEEEEEECCCC
T ss_conf 5457------52026688798068753424289888999999999997508736278079998606778