HHsearch alignment for GI: 254780484 and conserved domain: TIGR03156
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.94 E-value=3e-26 Score=170.03 Aligned_cols=162 Identities=21% Similarity=0.227 Sum_probs=113.5
Q ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf 76686899974899889899999738973798738884145212026655567850896499997600101112244789
Q gi|254780484|r 26 KAGPPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVD 105 (212)
Q Consensus 26 ~~~~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~ 105 (212)
T Consensus 186 ~~~~p~ValVGYTNAGKSTL~n~Lt~~~~--~~~d~lFaTLd~t~r~~-----~l~~~~~~ll~DTVGFI~~LP~~Li~a 258 (351)
T TIGR03156 186 RAGVPTVALVGYTNAGKSTLFNALTGADV--YAADQLFATLDPTTRRL-----DLPDGGEVLLTDTVGFIRDLPHELVAA 258 (351)
T ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCEEECCCCCCEE-----ECCCCCEEEEEECCCHHHHCCHHHHHH
T ss_conf 34997699966788778999999851776--41034313536732048-----879997699981500563088679999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH----HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 8888998777766420000011223578875454----554321025753221222211110246899999999997531
Q gi|254780484|r 106 SWGGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQ----DVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNY 181 (212)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~ 181 (212)
T Consensus 259 F~sTL-----ee~~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~NKiD~~~~~~~~~----~~------ 323 (351)
T TIGR03156 259 FRATL-----EEVREADLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYNKIDLLDEPRIER----LE------ 323 (351)
T ss_pred HHHHH-----HHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHCCCHHHHHH----HH------
T ss_conf 99999-----9998598999980588847899999999999976999998899996701589577899----87------
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 36898689998888899899999999872
Q gi|254780484|r 182 PTAHPEVIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 182 ~~~~~~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 324 -~~~~~~v~ISA~~g~gi~~L~~~I~~~L 351 (351)
T TIGR03156 324 -EGYPEAVFVSAKTGEGLDLLLEAIAERL 351 (351)
T ss_pred -HCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf -3799879996899989999999999559