HHsearch alignment for GI: 254780484 and conserved domain: TIGR03156

>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.94  E-value=3e-26  Score=170.03  Aligned_cols=162  Identities=21%  Similarity=0.227  Sum_probs=113.5

Q ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHH
Q ss_conf             76686899974899889899999738973798738884145212026655567850896499997600101112244789
Q gi|254780484|r   26 KAGPPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVD  105 (212)
Q Consensus        26 ~~~~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~  105 (212)
T Consensus       186 ~~~~p~ValVGYTNAGKSTL~n~Lt~~~~--~~~d~lFaTLd~t~r~~-----~l~~~~~~ll~DTVGFI~~LP~~Li~a  258 (351)
T TIGR03156       186 RAGVPTVALVGYTNAGKSTLFNALTGADV--YAADQLFATLDPTTRRL-----DLPDGGEVLLTDTVGFIRDLPHELVAA  258 (351)
T ss_pred             HCCCCEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCEEECCCCCCEE-----ECCCCCEEEEEECCCHHHHCCHHHHHH
T ss_conf             34997699966788778999999851776--41034313536732048-----879997699981500563088679999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH----HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf             8888998777766420000011223578875454----554321025753221222211110246899999999997531
Q gi|254780484|r  106 SWGGLIVRYLSERSTLRCVYLLIDCRHGVKQIDQ----DVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNY  181 (212)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~  181 (212)
T Consensus       259 F~sTL-----ee~~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~NKiD~~~~~~~~~----~~------  323 (351)
T TIGR03156       259 FRATL-----EEVREADLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYNKIDLLDEPRIER----LE------  323 (351)
T ss_pred             HHHHH-----HHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECHHCCCHHHHHH----HH------
T ss_conf             99999-----9998598999980588847899999999999976999998899996701589577899----87------


Q ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf             36898689998888899899999999872
Q gi|254780484|r  182 PTAHPEVIPTSSVKRKGIEVLRKAILETI  210 (212)
Q Consensus       182 ~~~~~~i~~vSA~~g~Gi~eL~~~I~~~l  210 (212)
T Consensus       324 -~~~~~~v~ISA~~g~gi~~L~~~I~~~L  351 (351)
T TIGR03156       324 -EGYPEAVFVSAKTGEGLDLLLEAIAERL  351 (351)
T ss_pred             -HCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             -3799879996899989999999999559