HHsearch alignment for GI: 254780484 and conserved domain: TIGR03348
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.21 E-value=0.0065 Score=35.89 Aligned_cols=124 Identities=19% Similarity=0.211 Sum_probs=61.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC-EEE------ECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHH
Q ss_conf 686899974899889899999738973-798------7388841452120266555678508964999976001011122
Q gi|254780484|r 28 GPPEIAFSGRSNVGKSSLINILVNRKN-LAR------TSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAP 100 (212)
Q Consensus 28 ~~p~VaivG~~NvGKSSLiNaL~g~~~-~a~------~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~ 100 (212)
T Consensus 110 ~LPWYlviG~~gsGKTt~l~~-Sgl~fPl~~~~~~~~~~g~gg-t~~cdw----------wft~~AVliDtaGry~~Q~~ 177 (1169)
T TIGR03348 110 DLPWYLVIGPPGSGKTTLLQN-SGLKFPLAERLGAAALRGVGG-TRNCDW----------WFTDEAVLIDTAGRYTTQDS 177 (1169)
T ss_pred HCCEEEEECCCCCCHHHHHHH-CCCCCCCCCCCCHHHCCCCCC-CCCCCE----------EEECCEEEEECCCCEECCCC
T ss_conf 389589978999866899983-799887741001122158899-855571----------65278799947976026888
Q ss_pred --HHHHHHHHHHHHHHHH--HHHHHCCCCCCCCCCCCC---CHHHH----------HHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf --4478988889987777--664200000112235788---75454----------554321025753221222211110
Q gi|254780484|r 101 --KKNVDSWGGLIVRYLS--ERSTLRCVYLLIDCRHGV---KQIDQ----------DVFSFLDKKAVSYQIVLTKIDKLS 163 (212)
Q Consensus 101 --~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~----------~~~~~~~~~~~~~~~v~nK~D~~~ 163 (212)
T Consensus 178 ~~~~d~~~W~~fL~lLkk~R~r~piNGvil~is~~~Ll~~~~~~~~~~a~~lr~Rl~El~~~lg~~~PVYv~~TK~Dll~ 257 (1169)
T TIGR03348 178 DPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHH
T ss_conf 64001899999999998648989987689997899974789999999999999999999998299877599866401230