HHsearch alignment for GI: 254780484 and conserved domain: cd00157

>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.52  E-value=9.2e-14  Score=98.25  Aligned_cols=158  Identities=14%  Similarity=0.107  Sum_probs=83.5

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             68999748998898999997389737987388841452120266555678508964999976001011122447898888
Q gi|254780484|r   30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGG  109 (212)
Q Consensus        30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~  109 (212)
T Consensus         1 iKi~llGd~~VGKTsli~r~~~~~f~--~~y~~Ti-~~----~~~~~~~~~~~~~~l~iwDt~G~e~~~~~~~~------   67 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFP--TEYVPTV-FD----NYSATVTVDGKQVNLGLWDTAGQEEYDRLRPL------   67 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCC--CCCCCEE-EE----EEEEEEEECCEEEEEEEEECCCCCCCCCCHHH------
T ss_conf             98999999996699999999629999--8758803-46----66899999999999999989987102413223------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHHH--HCCCCCCCCCCCCCCCCCCHHHHHHH---------HHHHHH
Q ss_conf             998777766420000011223578--87545455432--10257532212222111102468999---------999999
Q gi|254780484|r  110 LIVRYLSERSTLRCVYLLIDCRHG--VKQIDQDVFSF--LDKKAVSYQIVLTKIDKLSPTTAQET---------LEKTKY  176 (212)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~v~nK~D~~~~~~~~~~---------~~~~~~  176 (212)
T Consensus        68 ----~~---~~a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~r~V~~~e~~~  140 (171)
T cd00157          68 ----SY---PNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEK  140 (171)
T ss_pred             ----HH---HHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHH
T ss_conf             ----44---42658999996897788999999999999985999868999987100123000223311475158999999


Q ss_pred             HHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             975313689868999888889989999999987
Q gi|254780484|r  177 LIRNYPTAHPEVIPTSSVKRKGIEVLRKAILET  209 (212)
Q Consensus       177 ~~~~~~~~~~~i~~vSA~~g~Gi~eL~~~I~~~  209 (212)
T Consensus       141 ~a~~--~~~~~f~E~SAk~g~nV~e~F~~l~ra  171 (171)
T cd00157         141 LAKE--IGAIGYMECSALTQEGVKEVFEEAIRA  171 (171)
T ss_pred             HHHH--CCCCEEEEECCCCCCCHHHHHHHHHCC
T ss_conf             9998--499889997878995989999999668