HHsearch alignment for GI: 254780484 and conserved domain: cd00157
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.52 E-value=9.2e-14 Score=98.25 Aligned_cols=158 Identities=14% Similarity=0.107 Sum_probs=83.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 68999748998898999997389737987388841452120266555678508964999976001011122447898888
Q gi|254780484|r 30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGG 109 (212)
Q Consensus 30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~ 109 (212)
T Consensus 1 iKi~llGd~~VGKTsli~r~~~~~f~--~~y~~Ti-~~----~~~~~~~~~~~~~~l~iwDt~G~e~~~~~~~~------ 67 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFP--TEYVPTV-FD----NYSATVTVDGKQVNLGLWDTAGQEEYDRLRPL------ 67 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC--CCCCCEE-EE----EEEEEEEECCEEEEEEEEECCCCCCCCCCHHH------
T ss_conf 98999999996699999999629999--8758803-46----66899999999999999989987102413223------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHHH--HCCCCCCCCCCCCCCCCCCHHHHHHH---------HHHHHH
Q ss_conf 998777766420000011223578--87545455432--10257532212222111102468999---------999999
Q gi|254780484|r 110 LIVRYLSERSTLRCVYLLIDCRHG--VKQIDQDVFSF--LDKKAVSYQIVLTKIDKLSPTTAQET---------LEKTKY 176 (212)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~v~nK~D~~~~~~~~~~---------~~~~~~ 176 (212)
T Consensus 68 ----~~---~~a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~r~V~~~e~~~ 140 (171)
T cd00157 68 ----SY---PNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEK 140 (171)
T ss_pred ----HH---HHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHH
T ss_conf ----44---42658999996897788999999999999985999868999987100123000223311475158999999
Q ss_pred HHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 975313689868999888889989999999987
Q gi|254780484|r 177 LIRNYPTAHPEVIPTSSVKRKGIEVLRKAILET 209 (212)
Q Consensus 177 ~~~~~~~~~~~i~~vSA~~g~Gi~eL~~~I~~~ 209 (212)
T Consensus 141 ~a~~--~~~~~f~E~SAk~g~nV~e~F~~l~ra 171 (171)
T cd00157 141 LAKE--IGAIGYMECSALTQEGVKEVFEEAIRA 171 (171)
T ss_pred HHHH--CCCCEEEEECCCCCCCHHHHHHHHHCC
T ss_conf 9998--499889997878995989999999668