HHsearch alignment for GI: 254780484 and conserved domain: cd01851
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.50 E-value=0.00048 Score=42.39 Aligned_cols=65 Identities=18% Similarity=0.104 Sum_probs=40.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCEEEECCC-CCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHH
Q ss_conf 8999748998898999997389737987388-8414521202665556785089649999760010111
Q gi|254780484|r 31 EIAFSGRSNVGKSSLINILVNRKNLARTSNA-PGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYAR 98 (212)
Q Consensus 31 ~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~-p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~ 98 (212)
T Consensus 9 vvsv~G~~rtGKS~LlN~l~~~~~~F~~~~~~~~~T~Gi---w~~~~p~~~~~~~~~~llDtEG~~~~~ 74 (224)
T cd01851 9 VVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGI---WMWSVPFKLGKEHAVLLLDTEGTDGRE 74 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEE---EEEECCCCCCCCCEEEEEECCCCCCCC
T ss_conf 999876898988999999948888987478877656506---998356357887338998347777611