HHsearch alignment for GI: 254780484 and conserved domain: cd01855
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.21 E-value=5.8e-06 Score=53.40 Aligned_cols=90 Identities=19% Similarity=0.046 Sum_probs=58.6
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-H-HHHCCCCCCCEEEEECCCC
Q ss_conf 4200000112235788754545543210257532212222111102468999999999-9-7531368986899988888
Q gi|254780484|r 119 STLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKY-L-IRNYPTAHPEVIPTSSVKR 196 (212)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~-~-~~~~~~~~~~i~~vSA~~g 196 (212)
T Consensus 33 ~~~~lVv~VvDi~Df~~S~~~~l~~~~--~~~~v~lV~NK~DLLp~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvSa~~~ 110 (190)
T cd01855 33 PKKALVVHVVDIFDFPGSLIPRLRLFG--GNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKG 110 (190)
T ss_pred CCCCEEEEEEECCCCCCCCCHHHHHHC--CCCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 678459999754357644465579861--798689999815517887658888989999975015998431799766578
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 99899999999872
Q gi|254780484|r 197 KGIEVLRKAILETI 210 (212)
Q Consensus 197 ~Gi~eL~~~I~~~l 210 (212)
T Consensus 111 ~gi~~L~~~i~~~~ 124 (190)
T cd01855 111 WGVEELINAIKKLA 124 (190)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 69899999999974