HHsearch alignment for GI: 254780484 and conserved domain: cd01856
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.32 E-value=4.5e-06 Score=54.03 Aligned_cols=85 Identities=20% Similarity=0.206 Sum_probs=65.5
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 66420000011223578875454554321025753221222211110246899999999997531368986899988888
Q gi|254780484|r 117 ERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTSSVKR 196 (212)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g 196 (212)
T Consensus 16 ~l~~sDlIl~V~DaR~pl~~~~~~l~~~~~--~K~~ilV~NK~DL~~~~~~~~~~~~-------~~~~~~~~~~~sa~~~ 86 (171)
T cd01856 16 KLKLVDLVIEVRDARIPLSSRNPLLEKILG--NKPRIIVLNKADLADPKKTKKWLKY-------FESKGEKVLFVNAKSG 86 (171)
T ss_pred HHHHCCEEEEEEECCCCCCCCCHHHHHHHC--CCCEEEEEECCCCCCHHHHHHHHHH-------HHCCCCCEEEEECCCC
T ss_conf 998699999999898888765289999976--8988999855555897899999999-------9807996799842266
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 99899999999872
Q gi|254780484|r 197 KGIEVLRKAILETI 210 (212)
Q Consensus 197 ~Gi~eL~~~I~~~l 210 (212)
T Consensus 87 ~g~~~l~~~i~~~~ 100 (171)
T cd01856 87 KGVKKLLKAAKKLL 100 (171)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 57899999999973