HHsearch alignment for GI: 254780484 and conserved domain: cd01856

>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.32  E-value=4.5e-06  Score=54.03  Aligned_cols=85  Identities=20%  Similarity=0.206  Sum_probs=65.5

Q ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf             66420000011223578875454554321025753221222211110246899999999997531368986899988888
Q gi|254780484|r  117 ERSTLRCVYLLIDCRHGVKQIDQDVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTSSVKR  196 (212)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~g  196 (212)
T Consensus        16 ~l~~sDlIl~V~DaR~pl~~~~~~l~~~~~--~K~~ilV~NK~DL~~~~~~~~~~~~-------~~~~~~~~~~~sa~~~   86 (171)
T cd01856          16 KLKLVDLVIEVRDARIPLSSRNPLLEKILG--NKPRIIVLNKADLADPKKTKKWLKY-------FESKGEKVLFVNAKSG   86 (171)
T ss_pred             HHHHCCEEEEEEECCCCCCCCCHHHHHHHC--CCCEEEEEECCCCCCHHHHHHHHHH-------HHCCCCCEEEEECCCC
T ss_conf             998699999999898888765289999976--8988999855555897899999999-------9807996799842266


Q ss_pred             CCHHHHHHHHHHHH
Q ss_conf             99899999999872
Q gi|254780484|r  197 KGIEVLRKAILETI  210 (212)
Q Consensus       197 ~Gi~eL~~~I~~~l  210 (212)
T Consensus        87 ~g~~~l~~~i~~~~  100 (171)
T cd01856          87 KGVKKLLKAAKKLL  100 (171)
T ss_pred             CCHHHHHHHHHHHH
T ss_conf             57899999999973