HHsearch alignment for GI: 254780484 and conserved domain: cd01857
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.52 E-value=2.5e-14 Score=101.47 Aligned_cols=57 Identities=42% Similarity=0.627 Sum_probs=46.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHH
Q ss_conf 8689997489988989999973897379873888414521202665556785089649999760010
Q gi|254780484|r 29 PPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYG 95 (212)
Q Consensus 29 ~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~ 95 (212)
T Consensus 83 ~~~i~ivG~PNVGKSSlIN~L~g~k~-~~v~~~PG~Tr~~~~---------i~~~~~i~liDTPGi~ 139 (141)
T cd01857 83 NATIGLVGYPNVGKSSLINALVGKKK-VSVSATPGKTKHFQT---------IFLTPTITLCDCPGLV 139 (141)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCE-EEECCCCCCCCCEEE---------EEECCCEEEEECCCCC
T ss_conf 62689977888669999999858866-876599941576689---------9968999999898868