HHsearch alignment for GI: 254780484 and conserved domain: cd01858
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.04 E-value=0.0022 Score=38.54 Aligned_cols=87 Identities=15% Similarity=0.078 Sum_probs=61.1
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECC
Q ss_conf 6642000001122357887545455432102--57532212222111102468999999999975313689868999888
Q gi|254780484|r 117 ERSTLRCVYLLIDCRHGVKQIDQDVFSFLDK--KAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAHPEVIPTSSV 194 (212)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~ 194 (212)
T Consensus 5 ~i~~aD~vl~V~DaR~p~ss~n~~l~~~lr~~~~~K~~i~VlNK~Dl~~~~~~~----~w~~~l~~~--~~~~~~~~s~~ 78 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTA----RWVKILSKE--YPTIAFHASIN 78 (157)
T ss_pred HHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHH----HHHHHHCCC--CCEEEEEEECC
T ss_conf 787599999998898888878989999987537999789999894479878999----999986488--97399995323
Q ss_pred CCCCHHHHHHHHHHH
Q ss_conf 889989999999987
Q gi|254780484|r 195 KRKGIEVLRKAILET 209 (212)
Q Consensus 195 ~g~Gi~eL~~~I~~~ 209 (212)
T Consensus 79 ~~~~~~~l~~~l~~~ 93 (157)
T cd01858 79 NPFGKGSLIQLLRQF 93 (157)
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 864689999999987