HHsearch alignment for GI: 254780484 and conserved domain: cd01859
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.54 E-value=1.3e-14 Score=103.05 Aligned_cols=57 Identities=37% Similarity=0.516 Sum_probs=45.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHH
Q ss_conf 6868999748998898999997389737987388841452120266555678508964999976001
Q gi|254780484|r 28 GPPEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGY 94 (212)
Q Consensus 28 ~~p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~ 94 (212)
T Consensus 100 ~~~~v~ivG~PNVGKSTLIN~L~~~~~-~~v~~~pGtTr~~~~i---------~~~~~~~liDTpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-ASTSPSPGYTKGEQLV---------KITSKIYLLDTPGV 156 (156)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCE-EEECCCCCEECCEEEE---------EECCCEEEEECCCC
T ss_conf 662899981478459899999748813-7775999807055999---------97998899989099