HHsearch alignment for GI: 254780484 and conserved domain: cd01860
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.54 E-value=7.5e-14 Score=98.75 Aligned_cols=157 Identities=16% Similarity=0.127 Sum_probs=85.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 68999748998898999997389737987388841452120266555678508964999976001011122447898888
Q gi|254780484|r 30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGG 109 (212)
Q Consensus 30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~ 109 (212)
T Consensus 2 ~KivviGd~~vGKTsli~r~~~~~f~--~~~~~Tig~~----~~~k~i~~~~~~v~l~iwDtaG~e~~~~~~~------- 68 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFS--ENQESTIGAA----FLTQTVNLDDTTVKFEIWDTAGQERYRSLAP------- 68 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCCEE----EEEEEEEECCEEEEEEEEECCCCHHHHHHHH-------
T ss_conf 79999995996899999999439899--9868866678----8999999999999999997999710027889-------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCC--CHHHH--HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9987777664200000112235788--75454--5543210257532212222111102468999999999975313689
Q gi|254780484|r 110 LIVRYLSERSTLRCVYLLIDCRHGV--KQIDQ--DVFSFLDKKAVSYQIVLTKIDKLSPTTAQETLEKTKYLIRNYPTAH 185 (212)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (212)
T Consensus 69 ---~~~---~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilVgnK~DL~~~r~V~--~~e~~~~a~~~---~ 137 (163)
T cd01860 69 ---MYY---RGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVS--TEEAQEYADEN---G 137 (163)
T ss_pred ---HHH---CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCC--HHHHHHHHHHC---C
T ss_conf ---885---167714999818997999999999999998559872367755335756508999--99999999982---9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 8689998888899899999999872
Q gi|254780484|r 186 PEVIPTSSVKRKGIEVLRKAILETI 210 (212)
Q Consensus 186 ~~i~~vSA~~g~Gi~eL~~~I~~~l 210 (212)
T Consensus 138 ~~~~E~SAk~~~nV~e~F~~l~~~i 162 (163)
T cd01860 138 LLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 9799986265907899999999858