HHsearch alignment for GI: 254780484 and conserved domain: cd01873
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.17 E-value=8.5e-11 Score=81.19 Aligned_cols=161 Identities=16% Similarity=0.125 Sum_probs=76.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEE----ECCCCCEEEECCEEEEE----EEE--EEEECCCEEEEEECCHHHHHHH
Q ss_conf 6899974899889899999738973798----73888414521202665----556--7850896499997600101112
Q gi|254780484|r 30 PEIAFSGRSNVGKSSLINILVNRKNLAR----TSNAPGRTQHLNFFVPK----DFS--NLKNNLPAMALVDMPGYGYARA 99 (212)
Q Consensus 30 p~VaivG~~NvGKSSLiNaL~g~~~~a~----~~~~p~tt~~~~~~~~~----~~~--~~~~~~~~~~~~DtpG~~~~~~ 99 (212)
T Consensus 3 ~KiVlvGDs~VGKTsLl~~~~~n~~~~~~~~~~~~~pTv~~-~~~~~~~~~~~~~~~~~vdg~~v~L~iWDTAG~~~~-- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWA-IDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK-- 79 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCEEEEEECCCCEEEECCEEEEEEEEECCCCHHH--
T ss_conf 79999878998989999778747876556566675886633-333134444302211421895999999978996200--
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCHHHHHHHHHH--CCCCCCCCCCCCCCCCCCHHHHH-------
Q ss_conf 244789888899877776642000001122357--8875454554321--02575322122221111024689-------
Q gi|254780484|r 100 PKKNVDSWGGLIVRYLSERSTLRCVYLLIDCRH--GVKQIDQDVFSFL--DKKAVSYQIVLTKIDKLSPTTAQ------- 168 (212)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~v~nK~D~~~~~~~~------- 168 (212)
T Consensus 80 ---~r----~~~--y~----~~~~~ll~fdv~~~~Sf~~v~~~W~~ei~~~~~~~piiLVG~K~DLr~~~~~~~~~~~~~ 146 (195)
T cd01873 80 ---DR----RFA--YG----RSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRP 146 (195)
T ss_pred ---CC----CCC--CC----CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCHHHHHHHHC
T ss_conf ---12----143--56----888999999669801489999999999998689998899963757544630245554300
Q ss_pred ----------HHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf ----------99999999975313689868999888889989999999987
Q gi|254780484|r 169 ----------ETLEKTKYLIRNYPTAHPEVIPTSSVKRKGIEVLRKAILET 209 (212)
Q Consensus 169 ----------~~~~~~~~~~~~~~~~~~~i~~vSA~~g~Gi~eL~~~I~~~ 209 (212)
T Consensus 147 ~~~~~~~~~~v~~ee~~~~A~~~---g~~y~EtSAkt~~gV~e~F~~air~ 194 (195)
T cd01873 147 LARPIKNADILPPETGRAVAKEL---GIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHH---CCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 13655435767899999999982---9989982848798979999999982