HHsearch alignment for GI: 254780484 and conserved domain: cd01874
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.44 E-value=8e-13 Score=92.86 Aligned_cols=158 Identities=14% Similarity=0.122 Sum_probs=83.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 68999748998898999997389737987388841452120266555678508964999976001011122447898888
Q gi|254780484|r 30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGG 109 (212)
Q Consensus 30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~ 109 (212)
T Consensus 2 vKvv~lGd~~VGKTsli~r~~~~~f~--~~y~pti~~~-----~~~~~~~~~~~v~l~iwDTaG~e~~~~l~~------- 67 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDN-----YAVTVMIGGEPYTLGLFDTAGQEDYDRLRP------- 67 (175)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCEEEE-----EEEEEEECCEEEEEEEEECCCCCCCHHHHH-------
T ss_conf 79999899995889999999649899--9867863478-----999999999999999998999745124658-------
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCC--CHHHHHHHHH--HCCCCCCCCCCCCCCCCCCHHHHHHHH----------HHHH
Q ss_conf 9987777664200000112235788--7545455432--102575322122221111024689999----------9999
Q gi|254780484|r 110 LIVRYLSERSTLRCVYLLIDCRHGV--KQIDQDVFSF--LDKKAVSYQIVLTKIDKLSPTTAQETL----------EKTK 175 (212)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~v~nK~D~~~~~~~~~~~----------~~~~ 175 (212)
T Consensus 68 ---~~~---~~~~~~ilvydv~d~~Sf~~i~~~w~~~i~~~~~~~p~iLVGnK~DL~~~~~~~~~~~~~~~r~V~~~eg~ 141 (175)
T cd01874 68 ---LSY---PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGE 141 (175)
T ss_pred ---HHH---HCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHH
T ss_conf ---877---13888899963798788999999999999982989988999987203356666777644026566899999
Q ss_pred HHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 9975313689868999888889989999999987
Q gi|254780484|r 176 YLIRNYPTAHPEVIPTSSVKRKGIEVLRKAILET 209 (212)
Q Consensus 176 ~~~~~~~~~~~~i~~vSA~~g~Gi~eL~~~I~~~ 209 (212)
T Consensus 142 ~lA~~--~~~~~y~EtSAk~g~nV~e~F~~~i~~ 173 (175)
T cd01874 142 KLARD--LKAVKYVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred HHHHH--CCCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 99997--599599991337895979999999998