HHsearch alignment for GI: 254780484 and conserved domain: cd01874

>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.44  E-value=8e-13  Score=92.86  Aligned_cols=158  Identities=14%  Similarity=0.122  Sum_probs=83.9

Q ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEEEEEEEEEEEECCCEEEEEECCHHHHHHHHHHHHHHHHH
Q ss_conf             68999748998898999997389737987388841452120266555678508964999976001011122447898888
Q gi|254780484|r   30 PEIAFSGRSNVGKSSLINILVNRKNLARTSNAPGRTQHLNFFVPKDFSNLKNNLPAMALVDMPGYGYARAPKKNVDSWGG  109 (212)
Q Consensus        30 p~VaivG~~NvGKSSLiNaL~g~~~~a~~~~~p~tt~~~~~~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~  109 (212)
T Consensus         2 vKvv~lGd~~VGKTsli~r~~~~~f~--~~y~pti~~~-----~~~~~~~~~~~v~l~iwDTaG~e~~~~l~~-------   67 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFP--SEYVPTVFDN-----YAVTVMIGGEPYTLGLFDTAGQEDYDRLRP-------   67 (175)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCEEEE-----EEEEEEECCEEEEEEEEECCCCCCCHHHHH-------
T ss_conf             79999899995889999999649899--9867863478-----999999999999999998999745124658-------


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCC--CHHHHHHHHH--HCCCCCCCCCCCCCCCCCCHHHHHHHH----------HHHH
Q ss_conf             9987777664200000112235788--7545455432--102575322122221111024689999----------9999
Q gi|254780484|r  110 LIVRYLSERSTLRCVYLLIDCRHGV--KQIDQDVFSF--LDKKAVSYQIVLTKIDKLSPTTAQETL----------EKTK  175 (212)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~v~nK~D~~~~~~~~~~~----------~~~~  175 (212)
T Consensus        68 ---~~~---~~~~~~ilvydv~d~~Sf~~i~~~w~~~i~~~~~~~p~iLVGnK~DL~~~~~~~~~~~~~~~r~V~~~eg~  141 (175)
T cd01874          68 ---LSY---PQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGE  141 (175)
T ss_pred             ---HHH---HCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHH
T ss_conf             ---877---13888899963798788999999999999982989988999987203356666777644026566899999


Q ss_pred             HHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHH
Q ss_conf             9975313689868999888889989999999987
Q gi|254780484|r  176 YLIRNYPTAHPEVIPTSSVKRKGIEVLRKAILET  209 (212)
Q Consensus       176 ~~~~~~~~~~~~i~~vSA~~g~Gi~eL~~~I~~~  209 (212)
T Consensus       142 ~lA~~--~~~~~y~EtSAk~g~nV~e~F~~~i~~  173 (175)
T cd01874         142 KLARD--LKAVKYVECSALTQKGLKNVFDEAILA  173 (175)
T ss_pred             HHHHH--CCCCEEEECCCCCCCCHHHHHHHHHHH
T ss_conf             99997--599599991337895979999999998